HIV-1 nucleocapsid protein increases strand transfer recombination by promoting dimeric G-quartet formation

Journal of Biological Chemistry

Volumn 286, Issue 34, 2011, Pages 29838-29847

  Shen, Wen ^a   Gorelick, Robert J ^b   Bambara, Robert A ^a  

^a UNIVERSITY OF ROCHESTER MEDICAL CENTER   (United States)

^b SAIC FREDERICK INC   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

G-QUARTET; HOT SPOT; IN-VITRO; IN-VIVO; NUCLEOCAPSID PROTEINS; NUCLEOCAPSIDS; PROXIMITY EFFECTS; REVERSE TRANSCRIPTASES; TETRAMERS; TRANSFER EFFICIENCY;

GENES; MONOMERS; POSITIVE IONS; RNA;

DIMERS;

GUANINE; LITHIUM ION; NUCLEOCAPSID PROTEIN; POTASSIUM ION; RNA DIRECTED DNA POLYMERASE; VIRUS RNA;

ARTICLE; CONTROLLED STUDY; DIMERIZATION; GENE SEQUENCE; GENE STRUCTURE; GENETIC RECOMBINATION; GROUP SPECIFIC ANTIGEN GENE; HUMAN IMMUNODEFICIENCY VIRUS 1; IN VITRO STUDY; IN VIVO STUDY; NONHUMAN; PREDICTION; PRIORITY JOURNAL; PROTEIN INTERACTION; PROTEIN UNFOLDING; VIRUS GENE;

GAG GENE PRODUCTS, HUMAN IMMUNODEFICIENCY VIRUS; HIV REVERSE TRANSCRIPTASE; HIV-1; RECOMBINATION, GENETIC; RNA STABILITY; RNA, VIRAL;

HUMAN IMMUNODEFICIENCY VIRUS 1;

EID: 80051950686     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M111.262352     Document Type: Article

References (52)

1. Duesberg, P. H. (1968) Proc. Natl. Acad. Sci. U.S.A. 60, 1511-1518
2. Basu, V. P., Song, M., Gao, L., Rigby, S. T., Hanson, M. N., and Bambara, R. A. (2008) Virus Res. 134, 19-38
3. Hu, W. S., and Temin, H. M. (1990) Science 250, 1227-1233
4. Jetzt, A. E., Yu, H., Klarmann, G. J., Ron, Y., Preston, B. D., and Dougherty, J. P. (2000) J. Virol. 74, 1234-1240
5. Chen, J., Rhodes, T. D., and Hu, W. S. (2005) J. Virol. 79, 9337-9340
6. Levy, D. N., Aldrovandi, G. M., Kutsch, O., and Shaw, G. M. (2004) Proc. Natl. Acad. Sci. U.S.A. 101, 4204-4209
7. Moutouh, L., Corbeil, J., and Richman, D. D. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 6106-6111
8. Galetto, R., Moumen, A., Giacomoni, V., Véron, M., Charneau, P., and Negroni, M. (2004) J. Biol. Chem. 279, 36625-36632
9. Moumen, A., Polomack, L., Roques, B., Buc, H., and Negroni, M. (2001) Nucleic Acids Res. 29, 3814-3821
10. Dykes, C., Balakrishnan, M., Planelles, V., Zhu, Y., Bambara, R. A., and Demeter, L. M. (2004) Virology 326, 262-279
11. Balakrishnan, M., Fay, P. J., and Bambara, R. A. (2001) J. Biol. Chem. 276, 36482-36492
12. Negroni, M., and Buc, H. (2000) Proc. Natl. Acad. Sci. U.S.A. 97, 6385-6390
13. Simon-Loriere, E., Galetto, R., Hamoudi, M., Archer, J., Lefeuvre, P., Martin, D. P., Robertson, D. L., and Negroni, M. (2009) PLoS Pathog. 5, e1000418
14. Drummond, D. A., Silberg, J. J., Meyer, M. M., Wilke, C. O., and Arnold, F. H. (2005) Proc. Natl. Acad. Sci. U.S.A. 102, 5380-5385
15. Shen, W., Gao, L., Balakrishnan, M., and Bambara, R. A. (2009) J. Biol. Chem. 284, 33883-33893
16. Gellert, M., Lipsett, M. N., and Davies, D. R. (1962) Proc. Natl. Acad. Sci. U.S.A. 48, 2013-2018
17. Williamson, J. R. (1994) Annu Rev. Biophys. Biomol. Struct. 23, 703-730
18. Davis, J. T. (2004) Angew. Chem. Int. Ed. Engl. 43, 668-698
19. Guschlbauer, W., Chantot, J. F., and Thiele, D. (1990) J. Biomol. Struct. Dyn. 8, 491-511
20. Balasubramanian, S., and Neidle, S. (2009) Curr. Opin. Chem. Biol. 13, 345-353
21. Huppert, J. L., and Balasubramanian, S. (2007) Nucleic Acids Res. 35, 406-413
22. Crabbe, L., Verdun, R. E., Haggblom, C. I., and Karlseder, J. (2004) Science 306, 1951-1953
23. Mani, P., Yadav, V. K., Das, S. K., and Chowdhury, S. (2009) PLoS ONE 4, e4399
24. Darnell, J. C., Jensen, K. B., Jin, P., Brown, V., Warren, S. T., and Darnell, R. B. (2001) Cell 107, 489-499
25. Ramos, A., Hollingworth, D., and Pastore, A. (2003) RNA 9, 1198-1207
26. Salas, T. R., Petruseva, I., Lavrik, O., Bourdoncle, A., Mergny, J. L., Favre, A., and Saintomé, C. (2006) Nucleic Acids Res. 34, 4857-4865
27. Marquet, R., Baudin, F., Gabus, C., Darlix, J. L., Mougel, M., Ehresmann, C., and Ehresmann, B. (1991) Nucleic Acids Res. 19, 2349-2357
28. Sundquist, W. I., and Heaphy, S. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 3393-3397
29. Awang, G., and Sen, D. (1993) Biochemistry 32, 11453-11457
30. Green, L. M., and Berg, J. M. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 6403-6407
31. Berkowitz, R., Fisher, J., and Goff, S. P. (1996) Curr. Top. Microbiol. Immunol. 214, 177-218
32. Rong, L., Liang, C., Hsu, M., Kleiman, L., Petitjean, P., De Rocquigny, H., Roques, B. P., and Wainberg, M. A. (1998) J. Virol. 72, 9353-9358
33. Levin, J. G., Guo, J., Rouzina, I., and Musier-Forsyth, K. (2005) Prog. Nucleic Acid Res. Mol. Biol. 80, 217-286
34. Darlix, J. L., Vincent, A., Gabus, C., De Rocquigny, H., and Roques, B. (1993) C R Acad. Sci. III, Sci. Vie 316, 763-771
35. Allain, B., Lapadat-Tapolsky, M., Berlioz, C., and Darlix, J. L. (1994)EMBO J. 13, 973-981
36. Auxilien, S., Keith, G., Le Grice, S. F., and Darlix, J. L. (1999) J. Biol. Chem. 274, 4412-4420
37. Fisher, R. J., Rein, A., Fivash, M., Urbaneja, M. A., Casas-Finet, J. R., Medaglia, M., and Henderson, L. E. (1998) J. Virol. 72, 1902-1909
38. Berglund, J. A., Charpentier, B., and Rosbash, M. (1997) Nucleic Acids Res. 25, 1042-1049
39. Pandey, V. N., Kaushik, N., Rege, N., Sarafianos, S. G., Yadav, P. N., and Modak, M. J. (1996) Biochemistry 35, 2168-2179
40. Lee, R., Kaushik, N., Modak, M. J., Vinayak, R., and Pandey, V. N. (1998) Biochemistry 37, 900-910
41. Wu, W., Henderson, L. E., Copeland, T. D., Gorelick, R. J., Bosche, W. J., Rein, A., and Levin, J. G. (1996) J. Virol. 70, 7132-7142
42. Sen, D., and Gilbert, W. (1990) Nature 344, 410-414
43. Kankia, B. I., Barany, G., and Musier-Forsyth, K. (2005) Nucleic Acids Res. 33, 4395-4403
44. Lyonnais, S., Gorelick, R. J., Mergny, J. L., Le Cam, E., and Mirambeau, G. (2003) Nucleic Acids Res. 31, 5754-5763
45. Balakrishnan, M., Roques, B. P., Fay, P. J., and Bambara, R. A. (2003) J. Virol. 77, 4710-4721
46. Cheong, C., and Moore, P. B. (1992) Biochemistry 31, 8406-8414
47. Klarmann, G. J., Schauber, C. A., and Preston, B. D. (1993) J. Biol. Chem. 268, 9793-9802
48. Ji, J., Hoffmann, J. S., and Loeb, L. (1994) Nucleic Acids Res. 22, 47-52
49. Monchaud, D., Granzhan, A., Saettel, N., Guedin, A., Mergny, J. L., and Teulade-Fichou, M. P. (2010) J. Nucleic Acids, doi 525862
50. Fang, G., and Cech, T. R. (1993) Cell 74, 875-885
51. Roda, R. H., Balakrishnan, M., Hanson, M. N., Wohrl, B. M., Le Grice, S. F., Roques, B. P., Gorelick, R. J., and Bambara, R. A. (2003) J. Biol. Chem. 278, 31536-31546
52. Roda, R. H., Balakrishnan, M., Kim, J. K., Roques, B. P., Fay, P. J., and Bambara, R. A. (2002) J. Biol. Chem. 277, 46900-46911