The Kissing Hairpin Sequence Promotes Recombination within the HIV-I 5′ Leader Region

Journal of Biological Chemistry

Volumn 276, Issue 39, 2001, Pages 36482-36492

  Balakrishnan, Mini ^a   Fay, Philip J ^a   Bambara, Robert A ^a  

^a UNIVERSITY OF ROCHESTER MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DIMERIZATION; DIMERS; DNA; ENZYMES; VIRUSES;

REVERSE TRANSCRIPTION;

RNA;

DNA; POL PROTEIN; RNA DIRECTED DNA POLYMERASE; VIRUS RNA; RECOMBINANT PROTEIN; RNA;

5' UNTRANSLATED REGION; ARTICLE; DIMERIZATION; DNA TRANSCRIPTION; GENE DISRUPTION; GENETIC RECOMBINATION; GEOMETRY; HUMAN IMMUNODEFICIENCY VIRUS 1; MOLECULAR INTERACTION; NONHUMAN; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; STRUCTURAL GENE; CATALYSIS; CHEMISTRY; CONFORMATION; GENE DELETION; GENETICS; METABOLISM; MOLECULAR GENETICS; MUTATION; NUCLEOTIDE SEQUENCE; PLASMID; POLYMERASE CHAIN REACTION; PROTEIN SECONDARY STRUCTURE; PROTEIN TERTIARY STRUCTURE;

HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1; INSERTION SEQUENCES; RNA VIRUSES;

5' UNTRANSLATED REGIONS; BASE SEQUENCE; CATALYSIS; DIMERIZATION; DNA; GENE DELETION; HIV-1; MOLECULAR SEQUENCE DATA; MUTATION; NUCLEIC ACID CONFORMATION; PLASMIDS; POLYMERASE CHAIN REACTION; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; RECOMBINANT PROTEINS; RECOMBINATION, GENETIC; RNA; RNA-DIRECTED DNA POLYMERASE;

EID: 0035965239     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M102860200     Document Type: Article

References (75)

1. Gilboa, G. M., Mitra, S. W., Goff, S., and Baltimore, D. (1979) Cell 18, 93-100
2. Clavel, F., Hoggan, M. D., Willey, R. L., Strebel, K., Martin, M. A., and Repaske, R. (1989) J. Virol. 63, 1455-1459
3. Goodrich, D. W., and Duesberg, P. H. (1990) Proc. Natl. Acad. Sci. U. S. A. 87, 2052-2056
4. Hu, W. S., and Temin, H. M. (1990) Science 250, 1227-1233
5. Coffin, J. M. (1979) J. Gen. Virol. 42, 1-26
6. Xu, H., and Boeke, J. D. (1987) Proc. Natl. Acad. Sci. U. S. A. 84, 8553-8557
7. Hunter, E. (1978) Curr. Top. Microbiol. Immunol. 79, 295-309
8. Skalka, A. M., Boone, L., Junghans, R., and Luk, D. (1982) J. Cell. Biochem. 19, 293-304
9. Hu, W. S., and Temin, H. M. (1992) J. Virol. 66, 4457-4463
10. Anderson, J. A., Teufel, R. J., II, Yin, P. D., and Hu, W. S. (1998) J. Virol. 72, 1186-1194
11. Yu, H., Jetzt, A. E., Ron, Y., Preston, B. D., and Dougherty, J. P. (1998) J. Biol. Chem. 273, 28384-28391
12. Jetzt, A. E., Yu, H., Klarmann, G. J., Ron, Y., Preston, B. D., and Dougherty, J. P. (2000) J. Virol. 74, 1234-1240
13. Zhang, J., Tang, L. Y., Li, T., Ma, Y., and Sapp, C. M. (2000) J. Virol. 74, 2313-2322
14. Vogt, P. K. (1971) Virology 46, 947-952
15. Kawai, S., and Hanafusa, H. (1972) Virology 49, 37-44
16. Blair, D. G. (1977) Virology 77, 534-544
17. Linial, M., and Brown, S. (1979) J. Virol. 31, 257-260
18. Colicelli, J., and Goff, S. P. (1987) Virology 160, 518-522
19. DiFronzo, N. L., and Holland, C. A. (1993) J. Virol. 67, 3763-3770
20. Mikkelsen, J. G., Lund, A. H., Kristensen, K. D., Duch, M., Sorensen, M. S., Jorgensen, P., and Pedersen, F. S. (1996) J. Virol. 70, 1439-1447
21. Wain-Hobson, S. (1992) Curr. Top. Microbiol. Immunol. 176, 181-193
22. Goodenow, M., Huet, T., Saurin, W., Kwok, S., Sninsky, J., and Wain-Hobson, S. (1989) J. Acquired Immune Defic. Syndr. 2, 344-352
23. Coffin, J. M. (1996) AIDS 10, Suppl. 3, S75-S84
24. Gu, Z., Salomon, H., Cherrington, J. M., Mulato, A. S., Chen, M. S., Yarchoan, R., Foli, A., Sogocio, K. M., and Wainberg, M. A. (1995) Antimicrob. Agents Chemother. 39, 1888-1891
25. Kellam, P., and Larder, B. A. (1995) J. Virol. 69, 669-674
26. Robertson, D. L., Sharp, P. M., McCutchan, F. E., and Hahn, B. H. (1995) Nature 374, 124-126
27. Diaz, R. S., Sabino, E. C., Mayer, A., Mosley, J. W., and Busch, M. P. (1995) J. Virol. 69, 3273-3281
28. Salminen, M. O., Carr, J. K., Robertson, D. L., Hegerich, P., Gotte, D., Koch, C., Sanders-Buell, E., Gao, F., Sharp, P. M., Hahn, B. H., Burke, D. S., and McCutchan, F. E. (1997) J. Virol. 71, 2647-2655
29. Weiss, R. A., Mason, W. S., and Vogt, P. K. (1973) Virology 52, 535-552
30. Schwartzberg, P., Colicelli, J., and Goff, S. P. (1985) J. Virol. 53, 719-726
31. Murphy, J. E., and Goff, S. P. (1994) Virology 204, 458-461
32. Fu, W., and Rein, A. (1993) J. Virol. 67, 5443-5449
33. Fu, W., Gorelick, R. J., and Rein, A. (1994) J. Virol. 68, 5013-5018
34. Feng, Y. X., Copeland, T. D., Henderson, L. E., Gorelick, R. J., Bosche, W. J., Levin, J. G., and Rein, A. (1996) Proc. Natl. Acad. Sci. U. S. A. 93, 7577-7581
35. Bieth, E., Gabus, C., and Darlix, J. L. (1990) Nucleic Acids Res. 18, 119-127
36. Rein, A., Harvin, D. P., Mirro, J., Ernst, S. M., and Gorelick, R. J. (1994) J. Virol. 68, 6124-6129
37. Baudin, F., Marquet, R., Isel, C., Darlix, J. L., Ehresmann, B., and Ehresmann, C. (1993) J. Mol. Biol. 229, 382-397
38. Panganiban, A. T., and Fiore, D. (1988) Science 241, 1064-1069
39. Stuhlmann, H., and Berg, P. (1992) J. Virol. 66, 2378-2388
40. Laughrea, M., and Jette, L. (1994) Biochemistry 33, 13464-13474
41. Paillart, J. C., Marquet, R., Skripkin, E., Ehresmann, B., and Ehresmann, C. (1994) J. Biol. Chem. 269, 27486-27493
42. Skripkin, E., Paillart, J. C., Marquet, R., Ehresmann, B., and Ehresmann, C. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 4945-4949
43. Muriaux, D., Girard, P. M., Bonnet-Mathoniere, B., and Paoletti, J. (1995) J. Biol. Chem. 270, 8209-8216
44. Girard, P. M., Bonnet-Mathoniere, B., Muriaux, D., and Paoletti, J. (1995) Biochemistry 34, 9785-9794
45. Mujeeb, A., Clever, J. L., Billeci, T. M., James, T. L., and Parslow, T. G. (1998) Nat. Struct. Biol. 5, 432-436
46. Darlix, J. L., Gabus, C., Nugeyre, M. T., Clavel, F., and Barre-Sinoussi, F. (1990) J. Mol. Biol. 216, 689-699
47. Awang, G., and Sen, D. (1993) Biochemistry 32, 11453-11457
48. Clever, J. L., Wong, M. L., and Parslow, T. G. (1996) J. Virol. 70, 5902-5908
49. De Rocquigny, H., Gabus, C., Vincent, A., Fournie-Zaluski, M. C., Roques, B., and Darlix, J. L. (1992) Proc. Natl. Acad. Sci. U. S. A. 89, 6472-6476
50. Berkhout, B., and van Wamel, J. L. (1996) J. Virol. 70, 6723-6732
51. Paillart, J. C., Berthoux, L., Ottmann, M., Darlix, J. L., Marquet, R., Ehresmann, B., and Ehresmann, C. (1996) J. Virol. 70, 8348-8354
52. Berkhout, B. (1996) Prog. Nucleic Acids Res. Mol. Biol. 54, 1-34
53. Mikkelsen, J. G., Lund, A. H., Duch, M., and Pedersen, F. S. (1998) J. Virol. 72, 6967-6978
54. Lund, A. H., Mikkelsen, J. G., Schmidt, J., Duch, M., and Pedersen, F. S. (1999) J. Virol. 73, 9614-9618
55. Mikkelsen, J. G., Lund, A. H., Duch, M., and Pedersen, F. S. (2000) J. Virol. 74, 600-610
56. Kim, J. K., Palaniappan, C., Wu, W., Fay, P. J., and Bambara, R. A. (1997) J. Biol. Chem. 272, 16769-16777
57. Harrison, G. P., Mayo, M. S., Hunter, E., and Lever, A. M. (1998) Nucleic Acids Res. 26, 3433-3442
58. Berkhout, B., and van Wamel, J. L. (2000) RNA (N. Y.) 6, 282-295
59. Jaeger, J. A., Turner, D. H., and Zuker, M. (1989) Proc. Natl. Acad. Sci. U. S. A. 86, 7706-7710
60. DeStefano, J. J., Mallaber, L. M., Rodriguez-Rodriguez, L., Fay, P. J., and Bambara, R. A. (1992) J. Virol. 66, 6370-6378
61. DeStefano, J. J., Bambara, R. A., and Fay, P. J. (1994) J. Biol. Chem. 269, 161-168
62. Wu, W., Blumberg, B. M., Fay, P. J., and Bambara, R. A. (1995) J. Biol. Chem. 270, 325-332
63. Luo, G. X., and Taylor, J. (1990) J. Virol. 64, 4321-4328
64. Peliska, J. A., and Benkovic, S. J. (1992) Science 258, 1112-1118
65. DeStefano, J. J., Wu, W., Seehra, J., McCoy, J., Laston, D., Albone, E., Fay, P. J., and Bambara, R. A. (1994) Biochim. Biophys. Acta 1219, 380-388
66. Diaz, L., and DeStefano, J. J. (1996) Nucleic Acids Res. 24, 3086-3092
67. Palaniappan, C., Wisniewski, M., Wu, W., Fay, P. J., and Bambara, R. A. (1996) J. Biol. Chem. 271, 22331-22338
68. Pathak, V. K., and Temin, H. M. (1990) Proc. Natl. Acad. Sci. U. S. A. 87, 6019-6023
69. Burns, D. P., and Temin, H. M. (1994) J. Virol. 68, 4196-4203
70. Wooley, D. P., Bircher, L. A., and Smith, R. A. (1998) Virology 243, 229-234
71. Tanese, N., Telesnitsky, A., and Goff, S. P. (1991) J. Virol. 65, 4387-4397
72. Schatz, O., Cromme, F. V., Gruninger-Leitch, F., and Le Grice, S. F. (1989) FEBS Lett. 257, 311-314
73. Suo, Z., and Johnson, K. A. (1997) Biochemistry 36, 14778-14785
74. DeStefano, J. J., Roberts, B., and Shriner, D. (1997) Arch. Virol. 142, 1797-1812
75. Negroni, M., and Buc, H. (2001) Nat. Rev. Mol. Cell. Biol. 2, 151-155