-
2
-
-
33846269602
-
tRNA's Wobble Decoding of the Genome: 40 Years of Modification
-
DOI 10.1016/j.jmb.2006.11.046, PII S0022283606015865
-
Agris P.F., Vendeix F.A.P., Graham W.D. 2007. tRNA's wobble decoding of the genome: 40 years of modification. J Mol Biol 366: 1-13. (Pubitemid 46123342)
-
(2007)
Journal of Molecular Biology
, vol.366
, Issue.1
, pp. 1-13
-
-
Agris, P.F.1
Vendeix, F.A.P.2
Graham, W.D.3
-
3
-
-
0037196945
-
Sets of integrating plasmids and gene disruption cassettes containing improved counter-selection markers designed for repeated use in budding yeast
-
DOI 10.1002/yea.841
-
Akada R., Hirosawa I., Kawahata M., Hoshida H., Nishizawa Y. 2002. Sets of integrating plasmids and gene disruption cassettes containing improved counter-selection markers designed for repeated use in budding yeast. Yeast 19: 393-402. (Pubitemid 34284882)
-
(2002)
Yeast
, vol.19
, Issue.5
, pp. 393-402
-
-
Akada, R.1
Hirosawa, I.2
Kawahata, M.3
Hoshida, H.4
Nishizawa, Y.5
-
5
-
-
0021668558
-
A positive selection for mutants lacking orotidine-5′-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance
-
Boeke J.D., LaCroute F., Fink G.R. 1984. A positive selection for mutants lacking orotidine-5′-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance. Mol Gen Genet 197: 345-346.
-
(1984)
Mol Gen Genet
, vol.197
, pp. 345-346
-
-
Boeke, J.D.1
LaCroute, F.2
Fink, G.R.3
-
7
-
-
0030949354
-
A 2'-phosphotransferase implicated in tRNA splicing is essential in Saccharomyces cerevisiae
-
DOI 10.1074/jbc.272.20.13203
-
Culver G.M., McCraith S.M., Consaul S.A., Stanford D.R., Phizicky E.M. 1997. A 2′-phosphotransferase implicated in tRNA splicing is essential in Saccharomyces cerevisiae. J Biol Che M272: 13203-13210. (Pubitemid 27216747)
-
(1997)
Journal of Biological Chemistry
, vol.272
, Issue.20
, pp. 13203-13210
-
-
Culver, G.M.1
McCraith, S.M.2
Consaul, S.A.3
Stanford, D.R.4
Phizicky, E.M.5
-
8
-
-
0035254535
-
RNA polymerase III and RNA polymerase II promoter complexes are heterochromatin barriers in Saccharomyces cerevisiae
-
DOI 10.1093/emboj/20.3.520
-
Donze D., Kamakaka R.T. 2001. RNA polymerase III and RNA polymerase II promoter complexes are heterochromatin barriers in Saccharomyces cerevisiae. EMBO J 20: 520-531. (Pubitemid 32126987)
-
(2001)
EMBO Journal
, vol.20
, Issue.3
, pp. 520-531
-
-
Donze, D.1
Kamakaka, R.T.2
-
9
-
-
13744262410
-
Plant tRNA ligases are multifunctional enzymes that have diverged in sequence and substrate specificity from RNA ligases of other phylogenetic origins
-
DOI 10.1093/nar/gki174
-
Englert M., Beier H. 2005. Plant tRNA ligases are multifunctional enzymes that have diverged in sequence and substrate specificity from RNA ligases of other phylogenetic origins. Nucleic Acids Res 33: 388-399. (Pubitemid 40276959)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.1
, pp. 388-399
-
-
Englert, M.1
Beier, H.2
-
10
-
-
35248899296
-
Plant pre-tRNA splicing enzymes are targeted to multiple cellular compartments
-
DOI 10.1016/j.biochi.2007.06.014, PII S0300908407001666
-
Englert M., Latz A., Becker D., Gimple O., Beier H., Akama K. 2007. Plant pre-tRNA splicing enzymes are targeted to multiple cellular compartments. Biochimie 89: 1351-1365. (Pubitemid 47562626)
-
(2007)
Biochimie
, vol.89
, Issue.11
, pp. 1351-1365
-
-
Englert, M.1
Latz, A.2
Becker, D.3
Gimple, O.4
Beier, H.5
Akama, K.6
-
11
-
-
78049291343
-
Branchiostoma floridae has separate healing and sealing enzymes for 5′-phosphate RNA ligation
-
Englert M., Sheppard K., Gundllapalli S., Beier H., Söll D. 2010. Branchiostoma floridae has separate healing and sealing enzymes for 5′-phosphate RNA ligation. Proc Natl Acad Sci 107: 16834-16839.
-
(2010)
Proc Natl Acad Sci
, vol.107
, pp. 16834-16839
-
-
Englert, M.1
Sheppard, K.2
Gundllapalli, S.3
Beier, H.4
Söll, D.5
-
13
-
-
0020714001
-
Origin of splice junction phosphate in tRNAs processed by HeLa cell extract
-
Filipowicz W., Shatkin A.J. 1983. Origin of splice junction phosphate in tRNAs processed by HeLa cell extract. Cell 32: 547-557.
-
(1983)
Cell
, vol.32
, pp. 547-557
-
-
Filipowicz, W.1
Shatkin, A.J.2
-
14
-
-
33645787782
-
Highly variable rates of genome rearrangements between hemiascomycetous yeast lineages
-
doi: 10.1371/journal.pgen.0020032
-
Fischer G., Rocha E.P.C., Brunet F., Vergassola M., Dujon B. 2006. Highly variable rates of genome rearrangements between hemiascomycetous yeast lineages. PLoS Genet 2: e32. doi: 10.1371/journal.pgen.0020032.
-
(2006)
PLoS Genet
, vol.2
-
-
Fischer, G.1
Rocha, E.P.C.2
Brunet, F.3
Vergassola, M.4
Dujon, B.5
-
15
-
-
62449123460
-
Tri-split tRNA is a transfer RNA made from 3 transcripts that provides insight into the evolution of fragmented tRNAs in archaea
-
Fujishima K., Sugahara J., Kikuta K., Hirano R., Sato A., Tomita M., Kanai A. 2009. Tri-split tRNA is a transfer RNA made from 3 transcripts that provides insight into the evolution of fragmented tRNAs in archaea. Proc Natl Acad Sci 106: 2683-2687.
-
(2009)
Proc Natl Acad Sci
, vol.106
, pp. 2683-2687
-
-
Fujishima, K.1
Sugahara, J.2
Kikuta, K.3
Hirano, R.4
Sato, A.5
Tomita, M.6
Kanai, A.7
-
16
-
-
36248953763
-
Impaired tRNA Nuclear Export Links DNA Damage and Cell-Cycle Checkpoint
-
DOI 10.1016/j.cell.2007.09.042, PII S0092867407012780
-
Ghavidel A., Kislinger T., Pogoutse O., Sopko R., Jurisica I., Emili A. 2007. Impaired tRNA nuclear export links DNA damage and cell-cycle checkpoint. Cell 131: 915-926. (Pubitemid 350138086)
-
(2007)
Cell
, vol.131
, Issue.5
, pp. 915-926
-
-
Ghavidel, A.1
Kislinger, T.2
Pogoutse, O.3
Sopko, R.4
Jurisica, I.5
Emili, A.6
-
17
-
-
0030802234
-
Intron-dependent enzymatic formation of modified nucleosides in eukaryotic tRNAs: A review
-
DOI 10.1016/S0300-9084(97)83517-1
-
Grosjean H., Szweykowska-Kulinska Z., Motorin Y., Fasiolo F., Simos G. 1997. Intron-dependent enzymatic formation of modified nucleosides in eukaryotic tRNAs: A review. Biochimie 79: 293-302. (Pubitemid 27336286)
-
(1997)
Biochimie
, vol.79
, Issue.5
, pp. 293-302
-
-
Grosjean, H.1
Szweykowska-Kulinska, Z.2
Motorin, Y.3
Fasiolo, F.4
Simos, G.5
-
18
-
-
0003666095
-
-
Academic Press, San Diego, CA
-
Guthrie C, Fink GR, ed. 1991. Guide to yeast genetics and molecular biology (Methods in enzymol.), Vol. 194. Academic Press, San Diego, CA.
-
(1991)
Guide to Yeast Genetics and Molecular Biology (Methods in Enzymol.)
, vol.194
-
-
Guthrie, C.1
Fink, G.R.2
-
19
-
-
0020316667
-
Transcription initiation of eucaryotic transfer RNA genes
-
Hall B.D., Clarkson S.G., Tocchini-Valentini G. 1982. Transcription initiation of eucaryotic transfer RNA genes. Cell 29: 3-5. (Pubitemid 12027665)
-
(1982)
Cell
, vol.29
, Issue.1
, pp. 3-5
-
-
Hall, B.D.1
Clarkson, S.G.2
Tocchini-Valentini, G.3
-
20
-
-
71549163449
-
Transfer RNA processing in archaea: Unusual pathways and enzymes
-
Heinemann I.U., Söll D., Randau L. 2010. Transfer RNA processing in archaea: Unusual pathways and enzymes. FEBS Lett 584: 303-309.
-
(2010)
FEBS Lett
, vol.584
, pp. 303-309
-
-
Heinemann, I.U.1
Söll, D.2
Randau, L.3
-
21
-
-
0024278926
-
Testing for intron function in the essential Saccharomyces cerevisiae tRNASerUCG gene
-
UCG gene. J Mol Biol 202: 667-672.
-
(1988)
J Mol Biol
, vol.202
, pp. 667-672
-
-
Ho, C.K.1
Abelson, J.2
-
22
-
-
71849083574
-
Cellular dynamics of tRNAs and their genes
-
Hopper A.K., Pai D.A., Engelke D.R. 2010. Cellular dynamics of tRNAs and their genes. FEBS Lett 584: 310-317.
-
(2010)
FEBS Lett
, vol.584
, pp. 310-317
-
-
Hopper, A.K.1
Pai, D.A.2
Engelke, D.R.3
-
23
-
-
1642488233
-
The Saccharomyces cerevisiae TAN1 gene is required for N4-acetylcytidine formation in tRNA
-
4-acetylcytidine formation in tRNA. RNA 10: 712-719.
-
(2004)
RNA
, vol.10
, pp. 712-719
-
-
Johansson, M.J.O.1
Byström, A.S.2
-
24
-
-
43249104840
-
Eukaryotic wobble uridine modifications promote a functionally redundant decoding system
-
DOI 10.1128/MCB.01542-07
-
Johansson M.J.O., Esberg A., Huang B., Björk G.R., Byström A.S. 2008. Eukaryotic wobble uridine modifications promote a functionally redundant decoding system. Mol Cell Biol 28: 3301-3312. (Pubitemid 351657094)
-
(2008)
Molecular and Cellular Biology
, vol.28
, Issue.10
, pp. 3301-3312
-
-
Johansson, M.J.O.1
Esberg, A.2
Huang, B.3
Bjork, G.R.4
Bystrom, A.S.5
-
26
-
-
33645895581
-
The RNA polymerase III-dependent family of genes in hemiascomycetes: Comparative RNomics, decoding strategies, transcription and evolutionary implications
-
Marck C., Kachouri-Lafond R., Lafontaine I., Westhof E., Dujon B., Grosjean H. 2006. The RNA polymerase III-dependent family of genes in hemiascomycetes: Comparative RNomics, decoding strategies, transcription and evolutionary implications. Nucleic Acids Res 34: 1816-1835.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 1816-1835
-
-
Marck, C.1
Kachouri-Lafond, R.2
Lafontaine, I.3
Westhof, E.4
Dujon, B.5
Grosjean, H.6
-
27
-
-
0032821744
-
Multisite-specific tRNA:m5C-methyl-transferase (Trm4) in yeast Saccharomyces cerevisiae: Identification of the gene and substrate specificity of the enzyme
-
5C-methyl-transferase (Trm4) in yeast Saccharomyces cerevisiae: Identification of the gene and substrate specificity of the enzyme. RNA 5: 1105-1118.
-
(1999)
RNA
, vol.5
, pp. 1105-1118
-
-
Motorin, Y.1
Grosjean, H.2
-
28
-
-
2042479408
-
Identification of a human endonuclease complex reveals a link between tRNA splicing and pre-mRNA 3′ end formation
-
DOI 10.1016/S0092-8674(04)00342-3, PII S0092867404003423
-
Paushkin S.V., Patel M., Furia B.S., Peltz S.W., Trotta C.R. 2004. Identification of a human endonuclease complex reveals a link between tRNA splicing and pre-mRNA 3′ end formation. Cell 117: 311-321. (Pubitemid 38534538)
-
(2004)
Cell
, vol.117
, Issue.3
, pp. 311-321
-
-
Paushkin, S.V.1
Patel, M.2
Furia, B.S.3
Peltz, S.W.4
Trotta, C.R.5
-
29
-
-
77956276464
-
TRNA biology charges to the front
-
Phizicky E.M., Hopper A.K. 2010. tRNA biology charges to the front. Genes Dev 24: 1832-1860.
-
(2010)
Genes Dev
, vol.24
, pp. 1832-1860
-
-
Phizicky, E.M.1
Hopper, A.K.2
-
30
-
-
0023030648
-
Saccharomyces cerevisiae tRNA ligase. Purification of the protein and isolation of the structural gene
-
Phizicky E.M., Schwartz R.C., Abelson J. 1986. Saccharomyces cerevisiae tRNA ligase: Purification of the protein and isolation of the structural gene. J Biol Chem 261: 2978-2986. (Pubitemid 17218319)
-
(1986)
Journal of Biological Chemistry
, vol.261
, Issue.6
, pp. 2978-2986
-
-
Phizicky, E.M.1
Schwartz, R.C.2
Abelson, J.3
-
31
-
-
79951476167
-
HSPC117 is the essential subunit of a human tRNA splicing ligase complex
-
Popow J., Englert M., Weitzer S., Schleiffer A., Mierzwa B., Mechtler K., Trowitzsch S., Will C.L., Lührmann R., Söll D., et al. 2011. HSPC117 is the essential subunit of a human tRNA splicing ligase complex. Science 331: 760-764.
-
(2011)
Science
, vol.331
, pp. 760-764
-
-
Popow, J.1
Englert, M.2
Weitzer, S.3
Schleiffer, A.4
Mierzwa, B.5
Mechtler, K.6
Trowitzsch, S.7
Will, C.L.8
Lührmann, R.9
Söll, D.10
-
34
-
-
38649108114
-
Mammalian 2′,3′ cyclic nucleotide phosphodiesterase (CNP) can function as a tRNA splicing enzyme in vivo
-
DOI 10.1261/rna.858108
-
Schwer B., Aronova A., Ramirez A., Braun P., Shuman S. 2008. Mammalian 2′,3′ cyclic nucleotide phosphodiesterase (CNP) can function as a tRNA splicing enzyme in vivo. RNA 14: 204-210. (Pubitemid 351171580)
-
(2008)
RNA
, vol.14
, Issue.2
, pp. 204-210
-
-
Schwer, B.1
Aronova, A.2
Ramirez, A.3
Braun, P.4
Shuman, S.5
-
36
-
-
0029892431
-
Nuclear pore proteins are involved in the biogenesis of functional tRNA
-
Simos G., Tekotte H., Grosjean H., Segref A., Sharma K., Tollervey D., Hurt E.C. 1996. Nuclear pore proteins are involved in the biogenesis of functional tRNA. EMBO J 15: 2270-2284. (Pubitemid 26141143)
-
(1996)
EMBO Journal
, vol.15
, Issue.9
, pp. 2270-2284
-
-
Simos, G.1
Tekotte, H.2
Grosjean, H.3
Segref, A.4
Sharma, K.5
Tollervey, D.6
Hurt, E.C.7
-
37
-
-
0041856095
-
Utp8p is an essential intranuclear component of the nuclear tRNA export machinery of Saccharomyces cerevisiae
-
DOI 10.1074/jbc.M302779200
-
Steiner-Mosonyi M., Leslie D.M., Dehghani H., Aitchison J.D., Mangroo D. 2003. Utp8p is an essential intranuclear component of the nuclear tRNA export machinery of Saccharomyces cerevisiae. J Biol Chem 278: 32236-32245. (Pubitemid 37048416)
-
(2003)
Journal of Biological Chemistry
, vol.278
, Issue.34
, pp. 32236-32245
-
-
Steiner-Mosonyi, M.1
Leslie, D.M.2
Dehghani, H.3
Aitchison, J.D.4
Mangroo, D.5
-
38
-
-
0022751167
-
Effect of intron mutations on processing and function of Saccharomyces cerevisiae SUP53 tRNA in vitro and in vivo
-
Strobel M.C., Abelson J. 1986. Effect of intron mutations on processing and function of Saccharomyces cerevisiae SUP53 tRNA in vitro and in vivo. Mol Cell Biol 6: 2663-2673.
-
(1986)
Mol Cell Biol
, vol.6
, pp. 2663-2673
-
-
Strobel, M.C.1
Abelson, J.2
-
39
-
-
34247357415
-
In silico screening of archaeal tRNA-encoding genes having multiple introns with bulge-helix-bulge splicing motifs
-
DOI 10.1261/rna.309507
-
Sugahara J., Yachie N., Arakawa K., Tomita M. 2007. In silico screening of archaeal tRNA-encoding genes having multiple introns with bulge-helix-bulge splicing motifs. RNA 13: 671-681. (Pubitemid 46641525)
-
(2007)
RNA
, vol.13
, Issue.5
, pp. 671-681
-
-
Sugahara, J.1
Yachie, N.2
Arakawa, K.3
Tomita, M.4
-
41
-
-
0030730820
-
The yeast tRNA splicing endonuclease: A tetrameric enzyme with two active site subunits homologous to the archaeal tRNA endonucleases
-
Trotta C.R., Miao F., Arn E.A., Stevens S.W., Ho C.K., Rauhut R., Abelson J.N. 1997. The yeast tRNA splicing endonuclease: A tetrameric enzyme with two active site subunits homologous to the archaeal tRNA endonucleases. Cell 89: 849-858. (Pubitemid 27513511)
-
(1997)
Cell
, vol.89
, Issue.6
, pp. 849-858
-
-
Trotta, C.R.1
Miao, F.2
Arn, E.A.3
Stevens, S.W.4
Ho, C.K.5
Rauhut, R.6
Abelson, J.N.7
-
42
-
-
34248563036
-
The human RNA kinase hClp1 is active on 3′ transfer RNA exons and short interfering RNAs
-
DOI 10.1038/nature05777, PII NATURE05777
-
Weitzer S., Martinez J. 2007. The human RNA kinase hClp1 is active on 3′transfer RNA exons and short interfering RNAs. Nature 447: 222-226. (Pubitemid 46763082)
-
(2007)
Nature
, vol.447
, Issue.7141
, pp. 222-226
-
-
Weitzer, S.1
Martinez, J.2
-
43
-
-
33747288749
-
TRNA, new aspects in intracellular dynamics
-
Yoshihisa T. 2006. tRNA, new aspects in intracellular dynamics. Cell Mol Life Sci 63: 1813-1818.
-
(2006)
Cell Mol Life Sci
, vol.63
, pp. 1813-1818
-
-
Yoshihisa, T.1
-
44
-
-
0041467844
-
Possibility of cytoplasmic pre-tRNA splicing: The yeast tRNA splicing endonuclease mainly localizes on the mitochondria
-
DOI 10.1091/mbc.E02-11-0757
-
Yoshihisa T., Yunoki-Esaki K., Ohshima C., Tanaka N., Endo T. 2003. Possibility of cytoplasmic pre-tRNA splicing: The yeast tRNA splicing endonuclease mainly localizes on the mitochondria. Mol Biol Cell 14: 3266-3279. (Pubitemid 37013126)
-
(2003)
Molecular Biology of the Cell
, vol.14
, Issue.8
, pp. 3266-3279
-
-
Yoshihisa, T.1
Yunoki-Esaki, K.2
Ohshima, C.3
Tanaka, N.4
Endo, T.5
-
45
-
-
33847632168
-
Cytoplasmic splicing of tRNA in Saccharomyces cerevisiae
-
DOI 10.1111/j.1365-2443.2007.01056.x
-
Yoshihisa T., Ohshima C., Yunoki-Esaki K., Endo T. 2007. Cytoplasmic splicing of tRNA in Saccharomyces cerevisiae. Genes Cells 12: 285-297. (Pubitemid 46359584)
-
(2007)
Genes to Cells
, vol.12
, Issue.3
, pp. 285-297
-
-
Yoshihisa, T.1
Ohshima, C.2
Yunoki-Esaki, K.3
Endo, T.4
|