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Volumn 17, Issue 9, 2011, Pages 1760-1769

The intron of tRNA-Trp CCA is dispensable for growth and translation of Saccharomyces cerevisiae

Author keywords

Intron; Saccharomyces cerevisiae; tRNA; tRNA processing; tRNA splicing

Indexed keywords

AMINO ACID; FUNGAL PROTEIN; SULFUR 35; TRANSFER RNA; TRP CCA PROTEIN; UNCLASSIFIED DRUG; FUNGAL RNA; TRYPTOPHAN TRANSFER RNA;

EID: 80051839405     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.2851411     Document Type: Article
Times cited : (12)

References (45)
  • 2
    • 33846269602 scopus 로고    scopus 로고
    • tRNA's Wobble Decoding of the Genome: 40 Years of Modification
    • DOI 10.1016/j.jmb.2006.11.046, PII S0022283606015865
    • Agris P.F., Vendeix F.A.P., Graham W.D. 2007. tRNA's wobble decoding of the genome: 40 years of modification. J Mol Biol 366: 1-13. (Pubitemid 46123342)
    • (2007) Journal of Molecular Biology , vol.366 , Issue.1 , pp. 1-13
    • Agris, P.F.1    Vendeix, F.A.P.2    Graham, W.D.3
  • 3
    • 0037196945 scopus 로고    scopus 로고
    • Sets of integrating plasmids and gene disruption cassettes containing improved counter-selection markers designed for repeated use in budding yeast
    • DOI 10.1002/yea.841
    • Akada R., Hirosawa I., Kawahata M., Hoshida H., Nishizawa Y. 2002. Sets of integrating plasmids and gene disruption cassettes containing improved counter-selection markers designed for repeated use in budding yeast. Yeast 19: 393-402. (Pubitemid 34284882)
    • (2002) Yeast , vol.19 , Issue.5 , pp. 393-402
    • Akada, R.1    Hirosawa, I.2    Kawahata, M.3    Hoshida, H.4    Nishizawa, Y.5
  • 5
    • 0021668558 scopus 로고
    • A positive selection for mutants lacking orotidine-5′-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance
    • Boeke J.D., LaCroute F., Fink G.R. 1984. A positive selection for mutants lacking orotidine-5′-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance. Mol Gen Genet 197: 345-346.
    • (1984) Mol Gen Genet , vol.197 , pp. 345-346
    • Boeke, J.D.1    LaCroute, F.2    Fink, G.R.3
  • 7
    • 0030949354 scopus 로고    scopus 로고
    • A 2'-phosphotransferase implicated in tRNA splicing is essential in Saccharomyces cerevisiae
    • DOI 10.1074/jbc.272.20.13203
    • Culver G.M., McCraith S.M., Consaul S.A., Stanford D.R., Phizicky E.M. 1997. A 2′-phosphotransferase implicated in tRNA splicing is essential in Saccharomyces cerevisiae. J Biol Che M272: 13203-13210. (Pubitemid 27216747)
    • (1997) Journal of Biological Chemistry , vol.272 , Issue.20 , pp. 13203-13210
    • Culver, G.M.1    McCraith, S.M.2    Consaul, S.A.3    Stanford, D.R.4    Phizicky, E.M.5
  • 8
    • 0035254535 scopus 로고    scopus 로고
    • RNA polymerase III and RNA polymerase II promoter complexes are heterochromatin barriers in Saccharomyces cerevisiae
    • DOI 10.1093/emboj/20.3.520
    • Donze D., Kamakaka R.T. 2001. RNA polymerase III and RNA polymerase II promoter complexes are heterochromatin barriers in Saccharomyces cerevisiae. EMBO J 20: 520-531. (Pubitemid 32126987)
    • (2001) EMBO Journal , vol.20 , Issue.3 , pp. 520-531
    • Donze, D.1    Kamakaka, R.T.2
  • 9
    • 13744262410 scopus 로고    scopus 로고
    • Plant tRNA ligases are multifunctional enzymes that have diverged in sequence and substrate specificity from RNA ligases of other phylogenetic origins
    • DOI 10.1093/nar/gki174
    • Englert M., Beier H. 2005. Plant tRNA ligases are multifunctional enzymes that have diverged in sequence and substrate specificity from RNA ligases of other phylogenetic origins. Nucleic Acids Res 33: 388-399. (Pubitemid 40276959)
    • (2005) Nucleic Acids Research , vol.33 , Issue.1 , pp. 388-399
    • Englert, M.1    Beier, H.2
  • 10
    • 35248899296 scopus 로고    scopus 로고
    • Plant pre-tRNA splicing enzymes are targeted to multiple cellular compartments
    • DOI 10.1016/j.biochi.2007.06.014, PII S0300908407001666
    • Englert M., Latz A., Becker D., Gimple O., Beier H., Akama K. 2007. Plant pre-tRNA splicing enzymes are targeted to multiple cellular compartments. Biochimie 89: 1351-1365. (Pubitemid 47562626)
    • (2007) Biochimie , vol.89 , Issue.11 , pp. 1351-1365
    • Englert, M.1    Latz, A.2    Becker, D.3    Gimple, O.4    Beier, H.5    Akama, K.6
  • 11
    • 78049291343 scopus 로고    scopus 로고
    • Branchiostoma floridae has separate healing and sealing enzymes for 5′-phosphate RNA ligation
    • Englert M., Sheppard K., Gundllapalli S., Beier H., Söll D. 2010. Branchiostoma floridae has separate healing and sealing enzymes for 5′-phosphate RNA ligation. Proc Natl Acad Sci 107: 16834-16839.
    • (2010) Proc Natl Acad Sci , vol.107 , pp. 16834-16839
    • Englert, M.1    Sheppard, K.2    Gundllapalli, S.3    Beier, H.4    Söll, D.5
  • 13
    • 0020714001 scopus 로고
    • Origin of splice junction phosphate in tRNAs processed by HeLa cell extract
    • Filipowicz W., Shatkin A.J. 1983. Origin of splice junction phosphate in tRNAs processed by HeLa cell extract. Cell 32: 547-557.
    • (1983) Cell , vol.32 , pp. 547-557
    • Filipowicz, W.1    Shatkin, A.J.2
  • 14
    • 33645787782 scopus 로고    scopus 로고
    • Highly variable rates of genome rearrangements between hemiascomycetous yeast lineages
    • doi: 10.1371/journal.pgen.0020032
    • Fischer G., Rocha E.P.C., Brunet F., Vergassola M., Dujon B. 2006. Highly variable rates of genome rearrangements between hemiascomycetous yeast lineages. PLoS Genet 2: e32. doi: 10.1371/journal.pgen.0020032.
    • (2006) PLoS Genet , vol.2
    • Fischer, G.1    Rocha, E.P.C.2    Brunet, F.3    Vergassola, M.4    Dujon, B.5
  • 15
    • 62449123460 scopus 로고    scopus 로고
    • Tri-split tRNA is a transfer RNA made from 3 transcripts that provides insight into the evolution of fragmented tRNAs in archaea
    • Fujishima K., Sugahara J., Kikuta K., Hirano R., Sato A., Tomita M., Kanai A. 2009. Tri-split tRNA is a transfer RNA made from 3 transcripts that provides insight into the evolution of fragmented tRNAs in archaea. Proc Natl Acad Sci 106: 2683-2687.
    • (2009) Proc Natl Acad Sci , vol.106 , pp. 2683-2687
    • Fujishima, K.1    Sugahara, J.2    Kikuta, K.3    Hirano, R.4    Sato, A.5    Tomita, M.6    Kanai, A.7
  • 16
    • 36248953763 scopus 로고    scopus 로고
    • Impaired tRNA Nuclear Export Links DNA Damage and Cell-Cycle Checkpoint
    • DOI 10.1016/j.cell.2007.09.042, PII S0092867407012780
    • Ghavidel A., Kislinger T., Pogoutse O., Sopko R., Jurisica I., Emili A. 2007. Impaired tRNA nuclear export links DNA damage and cell-cycle checkpoint. Cell 131: 915-926. (Pubitemid 350138086)
    • (2007) Cell , vol.131 , Issue.5 , pp. 915-926
    • Ghavidel, A.1    Kislinger, T.2    Pogoutse, O.3    Sopko, R.4    Jurisica, I.5    Emili, A.6
  • 17
    • 0030802234 scopus 로고    scopus 로고
    • Intron-dependent enzymatic formation of modified nucleosides in eukaryotic tRNAs: A review
    • DOI 10.1016/S0300-9084(97)83517-1
    • Grosjean H., Szweykowska-Kulinska Z., Motorin Y., Fasiolo F., Simos G. 1997. Intron-dependent enzymatic formation of modified nucleosides in eukaryotic tRNAs: A review. Biochimie 79: 293-302. (Pubitemid 27336286)
    • (1997) Biochimie , vol.79 , Issue.5 , pp. 293-302
    • Grosjean, H.1    Szweykowska-Kulinska, Z.2    Motorin, Y.3    Fasiolo, F.4    Simos, G.5
  • 19
    • 0020316667 scopus 로고
    • Transcription initiation of eucaryotic transfer RNA genes
    • Hall B.D., Clarkson S.G., Tocchini-Valentini G. 1982. Transcription initiation of eucaryotic transfer RNA genes. Cell 29: 3-5. (Pubitemid 12027665)
    • (1982) Cell , vol.29 , Issue.1 , pp. 3-5
    • Hall, B.D.1    Clarkson, S.G.2    Tocchini-Valentini, G.3
  • 20
    • 71549163449 scopus 로고    scopus 로고
    • Transfer RNA processing in archaea: Unusual pathways and enzymes
    • Heinemann I.U., Söll D., Randau L. 2010. Transfer RNA processing in archaea: Unusual pathways and enzymes. FEBS Lett 584: 303-309.
    • (2010) FEBS Lett , vol.584 , pp. 303-309
    • Heinemann, I.U.1    Söll, D.2    Randau, L.3
  • 21
    • 0024278926 scopus 로고
    • Testing for intron function in the essential Saccharomyces cerevisiae tRNASerUCG gene
    • UCG gene. J Mol Biol 202: 667-672.
    • (1988) J Mol Biol , vol.202 , pp. 667-672
    • Ho, C.K.1    Abelson, J.2
  • 22
    • 71849083574 scopus 로고    scopus 로고
    • Cellular dynamics of tRNAs and their genes
    • Hopper A.K., Pai D.A., Engelke D.R. 2010. Cellular dynamics of tRNAs and their genes. FEBS Lett 584: 310-317.
    • (2010) FEBS Lett , vol.584 , pp. 310-317
    • Hopper, A.K.1    Pai, D.A.2    Engelke, D.R.3
  • 23
    • 1642488233 scopus 로고    scopus 로고
    • The Saccharomyces cerevisiae TAN1 gene is required for N4-acetylcytidine formation in tRNA
    • 4-acetylcytidine formation in tRNA. RNA 10: 712-719.
    • (2004) RNA , vol.10 , pp. 712-719
    • Johansson, M.J.O.1    Byström, A.S.2
  • 24
    • 43249104840 scopus 로고    scopus 로고
    • Eukaryotic wobble uridine modifications promote a functionally redundant decoding system
    • DOI 10.1128/MCB.01542-07
    • Johansson M.J.O., Esberg A., Huang B., Björk G.R., Byström A.S. 2008. Eukaryotic wobble uridine modifications promote a functionally redundant decoding system. Mol Cell Biol 28: 3301-3312. (Pubitemid 351657094)
    • (2008) Molecular and Cellular Biology , vol.28 , Issue.10 , pp. 3301-3312
    • Johansson, M.J.O.1    Esberg, A.2    Huang, B.3    Bjork, G.R.4    Bystrom, A.S.5
  • 26
    • 33645895581 scopus 로고    scopus 로고
    • The RNA polymerase III-dependent family of genes in hemiascomycetes: Comparative RNomics, decoding strategies, transcription and evolutionary implications
    • Marck C., Kachouri-Lafond R., Lafontaine I., Westhof E., Dujon B., Grosjean H. 2006. The RNA polymerase III-dependent family of genes in hemiascomycetes: Comparative RNomics, decoding strategies, transcription and evolutionary implications. Nucleic Acids Res 34: 1816-1835.
    • (2006) Nucleic Acids Res , vol.34 , pp. 1816-1835
    • Marck, C.1    Kachouri-Lafond, R.2    Lafontaine, I.3    Westhof, E.4    Dujon, B.5    Grosjean, H.6
  • 27
    • 0032821744 scopus 로고    scopus 로고
    • Multisite-specific tRNA:m5C-methyl-transferase (Trm4) in yeast Saccharomyces cerevisiae: Identification of the gene and substrate specificity of the enzyme
    • 5C-methyl-transferase (Trm4) in yeast Saccharomyces cerevisiae: Identification of the gene and substrate specificity of the enzyme. RNA 5: 1105-1118.
    • (1999) RNA , vol.5 , pp. 1105-1118
    • Motorin, Y.1    Grosjean, H.2
  • 28
    • 2042479408 scopus 로고    scopus 로고
    • Identification of a human endonuclease complex reveals a link between tRNA splicing and pre-mRNA 3′ end formation
    • DOI 10.1016/S0092-8674(04)00342-3, PII S0092867404003423
    • Paushkin S.V., Patel M., Furia B.S., Peltz S.W., Trotta C.R. 2004. Identification of a human endonuclease complex reveals a link between tRNA splicing and pre-mRNA 3′ end formation. Cell 117: 311-321. (Pubitemid 38534538)
    • (2004) Cell , vol.117 , Issue.3 , pp. 311-321
    • Paushkin, S.V.1    Patel, M.2    Furia, B.S.3    Peltz, S.W.4    Trotta, C.R.5
  • 29
    • 77956276464 scopus 로고    scopus 로고
    • TRNA biology charges to the front
    • Phizicky E.M., Hopper A.K. 2010. tRNA biology charges to the front. Genes Dev 24: 1832-1860.
    • (2010) Genes Dev , vol.24 , pp. 1832-1860
    • Phizicky, E.M.1    Hopper, A.K.2
  • 30
    • 0023030648 scopus 로고
    • Saccharomyces cerevisiae tRNA ligase. Purification of the protein and isolation of the structural gene
    • Phizicky E.M., Schwartz R.C., Abelson J. 1986. Saccharomyces cerevisiae tRNA ligase: Purification of the protein and isolation of the structural gene. J Biol Chem 261: 2978-2986. (Pubitemid 17218319)
    • (1986) Journal of Biological Chemistry , vol.261 , Issue.6 , pp. 2978-2986
    • Phizicky, E.M.1    Schwartz, R.C.2    Abelson, J.3
  • 34
    • 38649108114 scopus 로고    scopus 로고
    • Mammalian 2′,3′ cyclic nucleotide phosphodiesterase (CNP) can function as a tRNA splicing enzyme in vivo
    • DOI 10.1261/rna.858108
    • Schwer B., Aronova A., Ramirez A., Braun P., Shuman S. 2008. Mammalian 2′,3′ cyclic nucleotide phosphodiesterase (CNP) can function as a tRNA splicing enzyme in vivo. RNA 14: 204-210. (Pubitemid 351171580)
    • (2008) RNA , vol.14 , Issue.2 , pp. 204-210
    • Schwer, B.1    Aronova, A.2    Ramirez, A.3    Braun, P.4    Shuman, S.5
  • 35
    • 0030816674 scopus 로고    scopus 로고
    • The modified wobble base inosine in yeast tRNAIle is a positive determinant for aminoacylation by isoleucyl-tRNA synthetase
    • Ile is a positive determinant for aminoacylation by isoleucyl-tRNA synthetase. Biochemistry 36: 8269-8275.
    • (1997) Biochemistry , vol.36 , pp. 8269-8275
    • Senger, B.1    Auxilien, S.2    Englisch, U.3    Cramer, F.4    Fasiolo, F.5
  • 37
    • 0041856095 scopus 로고    scopus 로고
    • Utp8p is an essential intranuclear component of the nuclear tRNA export machinery of Saccharomyces cerevisiae
    • DOI 10.1074/jbc.M302779200
    • Steiner-Mosonyi M., Leslie D.M., Dehghani H., Aitchison J.D., Mangroo D. 2003. Utp8p is an essential intranuclear component of the nuclear tRNA export machinery of Saccharomyces cerevisiae. J Biol Chem 278: 32236-32245. (Pubitemid 37048416)
    • (2003) Journal of Biological Chemistry , vol.278 , Issue.34 , pp. 32236-32245
    • Steiner-Mosonyi, M.1    Leslie, D.M.2    Dehghani, H.3    Aitchison, J.D.4    Mangroo, D.5
  • 38
    • 0022751167 scopus 로고
    • Effect of intron mutations on processing and function of Saccharomyces cerevisiae SUP53 tRNA in vitro and in vivo
    • Strobel M.C., Abelson J. 1986. Effect of intron mutations on processing and function of Saccharomyces cerevisiae SUP53 tRNA in vitro and in vivo. Mol Cell Biol 6: 2663-2673.
    • (1986) Mol Cell Biol , vol.6 , pp. 2663-2673
    • Strobel, M.C.1    Abelson, J.2
  • 39
    • 34247357415 scopus 로고    scopus 로고
    • In silico screening of archaeal tRNA-encoding genes having multiple introns with bulge-helix-bulge splicing motifs
    • DOI 10.1261/rna.309507
    • Sugahara J., Yachie N., Arakawa K., Tomita M. 2007. In silico screening of archaeal tRNA-encoding genes having multiple introns with bulge-helix-bulge splicing motifs. RNA 13: 671-681. (Pubitemid 46641525)
    • (2007) RNA , vol.13 , Issue.5 , pp. 671-681
    • Sugahara, J.1    Yachie, N.2    Arakawa, K.3    Tomita, M.4
  • 41
    • 0030730820 scopus 로고    scopus 로고
    • The yeast tRNA splicing endonuclease: A tetrameric enzyme with two active site subunits homologous to the archaeal tRNA endonucleases
    • Trotta C.R., Miao F., Arn E.A., Stevens S.W., Ho C.K., Rauhut R., Abelson J.N. 1997. The yeast tRNA splicing endonuclease: A tetrameric enzyme with two active site subunits homologous to the archaeal tRNA endonucleases. Cell 89: 849-858. (Pubitemid 27513511)
    • (1997) Cell , vol.89 , Issue.6 , pp. 849-858
    • Trotta, C.R.1    Miao, F.2    Arn, E.A.3    Stevens, S.W.4    Ho, C.K.5    Rauhut, R.6    Abelson, J.N.7
  • 42
    • 34248563036 scopus 로고    scopus 로고
    • The human RNA kinase hClp1 is active on 3′ transfer RNA exons and short interfering RNAs
    • DOI 10.1038/nature05777, PII NATURE05777
    • Weitzer S., Martinez J. 2007. The human RNA kinase hClp1 is active on 3′transfer RNA exons and short interfering RNAs. Nature 447: 222-226. (Pubitemid 46763082)
    • (2007) Nature , vol.447 , Issue.7141 , pp. 222-226
    • Weitzer, S.1    Martinez, J.2
  • 43
    • 33747288749 scopus 로고    scopus 로고
    • TRNA, new aspects in intracellular dynamics
    • Yoshihisa T. 2006. tRNA, new aspects in intracellular dynamics. Cell Mol Life Sci 63: 1813-1818.
    • (2006) Cell Mol Life Sci , vol.63 , pp. 1813-1818
    • Yoshihisa, T.1
  • 44
    • 0041467844 scopus 로고    scopus 로고
    • Possibility of cytoplasmic pre-tRNA splicing: The yeast tRNA splicing endonuclease mainly localizes on the mitochondria
    • DOI 10.1091/mbc.E02-11-0757
    • Yoshihisa T., Yunoki-Esaki K., Ohshima C., Tanaka N., Endo T. 2003. Possibility of cytoplasmic pre-tRNA splicing: The yeast tRNA splicing endonuclease mainly localizes on the mitochondria. Mol Biol Cell 14: 3266-3279. (Pubitemid 37013126)
    • (2003) Molecular Biology of the Cell , vol.14 , Issue.8 , pp. 3266-3279
    • Yoshihisa, T.1    Yunoki-Esaki, K.2    Ohshima, C.3    Tanaka, N.4    Endo, T.5
  • 45
    • 33847632168 scopus 로고    scopus 로고
    • Cytoplasmic splicing of tRNA in Saccharomyces cerevisiae
    • DOI 10.1111/j.1365-2443.2007.01056.x
    • Yoshihisa T., Ohshima C., Yunoki-Esaki K., Endo T. 2007. Cytoplasmic splicing of tRNA in Saccharomyces cerevisiae. Genes Cells 12: 285-297. (Pubitemid 46359584)
    • (2007) Genes to Cells , vol.12 , Issue.3 , pp. 285-297
    • Yoshihisa, T.1    Ohshima, C.2    Yunoki-Esaki, K.3    Endo, T.4


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