Identification of direct targets for the miR-17-92 cluster by proteomic analysis

Proteomics

Volumn 11, Issue 17, 2011, Pages 3531-3539

  Kanzaki, Hirotaka ^a   Ito, Sachio ^a   Hanafusa, Hiroko ^a   Jitsumori, Yoshimi ^a   Tamaru, Seiji ^a   Shimizu, Kenji ^a   Ouchida, Mamoru ^a  

^a OKAYAMA UNIVERSITY   (Japan)

Author keywords

Cell biology; MiRNA; Small cell lung cancer (SCLC); Target genes

Indexed keywords

MICRORNA; MICRORNA 17 92; MICRORNA 19A; MICRORNA 20A; MICRORNA 92 1; UNCLASSIFIED DRUG;

ARTICLE; CANCER CELL; CARCINOGENESIS; CONTROLLED STUDY; GENE CLUSTER; GENE OVEREXPRESSION; GENE SILENCING; GENE TARGETING; HUMAN; HUMAN TISSUE; LUNG CANCER; LUNG SMALL CELL CANCER; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEOMICS; QUANTITATIVE ANALYSIS; UPREGULATION;

CELL LINE, TUMOR; GENE EXPRESSION REGULATION, NEOPLASTIC; HUMANS; LUNG NEOPLASMS; MICRORNAS; PROTEOME; PROTEOMICS; SMALL CELL LUNG CARCINOMA;

EID: 80051819856     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201000501     Document Type: Article

References (45)

1. Bartel, D. P., MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116, 281-297.
2. Zamore, P. D., Haley, B., Ribo-genome: the big world of small RNAs. Science 2005, 309, 1519-1524.
3. Hannon, G. J., RNA interference. Nature 2002, 418, 244-251.
4. Palatnik, J. F., Allen, E., Wu, X. L., Schommer, C. et al., Control of leaf morphogenesis by microRNAs. Nature 2003, 425, 257-263.
5. Tang, G. L., Reinhart, B. J., Bartel, D. P., Zamore, P. D., A biochemical framework for RNA silencing in plants. Gene Dev. 2003, 17, 49-63.
6. Martin, G., Schouest, K., Kovvuru, P., Spillane, C., Prediction and validation of microRNA targets in animal genomes. J. Biosci. 2007, 32, 1049-1052.
7. Lewis, B. P., Burge, C. B., Bartel, D. P., Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 2005, 120, 15-20.
8. Lee, Y. S., Kim, H. K., Chung, S. M., Kim, K. S., Dutta, A., Depletion of human micro-RNA miR-125b reveals that it is critical for the proliferation of differentiated cells but not for the downregulation of putative targets during differentiation. J. Biol. Chem. 2005, 280, 16635-16641.
9. Ivanovska, I., Ball, A. S., Diaz, R. L., Magnus, J. F. et al., MicroRNAs in the miR-106b family regulate p21/CDKN1A and promote cell cycle progression. Mol. Cell. Biol. 2008, 28, 2167-2174.
10. Kobayashi, T., Lu, J., Cobb, B. S., Rodda, S. J. et al., Dicer-dependent pathways regulate chondrocyte proliferation and differentiation. Proc. Natl. Acad. Sci. USA 2008, 105, 1949-1954.
11. Pineau, P., Volinia, S., McJunkin, K., Marchio, A. et al., miR-221 overexpression contributes to liver tumorigenesis. Proc. Natl. Acad. Sci. USA 2010, 107, 264-269.
12. Lewis, B. P., Shih, I. H., Jones-Rhoades, M. W., Bartel, D. P., Burge, C. B., Prediction of mammalian microRNA targets. Cell 2003, 115, 787-798.
13. Krek, A., Grun, D., Poy, M. N., Wolf, R. et al., Combinatorial microRNA target predictions. Nat. Genet. 2005, 37, 495-500.
14. John, B., Enright, A. J., Aravin, A., Tuschl, T. et al., Human MicroRNA targets. PLoS Biol 2004, 2, 1862-1879.
15. Sethupathy, P., Corda, B., Hatzigeorgiou, A. G., TarBase: a comprehensive database of experimentally supported animal microRNA targets. RNA 2006, 12, 192-197.
16. Lim, L. P., Lau, N. C., Garrett-Engele, P., Grimson, A. et al., Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature 2005, 433, 769-773.
17. Wang, X. W., Wang, X. H., Systematic identification of microRNA functions by combining target prediction and expression profiling. Nucl. Acids Res. 2006, 34, 1646-1652.
18. Frankel, L. B., Christoffersen, N. R., Jacobsen, A., Lindow, M. et al., Programmed cell death 4 (PDCD4) is an important functional target of the microRNA miR-21 in breast cancer cells. J. Biol. Chem. 2008, 283, 1026-1033.
19. Hayashita, Y., Osada, H., Tatematsu, Y., Yamada, H. et al., A polycistronic microRNA cluster, miR-17-92, is overexpressed in human lung cancers and enhances cell proliferation. Cancer Res. 2005, 65, 9628-9632.
20. Matsubara, H., Takeuchi, T., Nishikawa, E., Yanagisawa, K. et al., Apoptosis induction by antisense oligonucleotides against miR-17-5p and miR-20a in lung cancers overexpressing miR-17-92. Oncogene 2007, 26, 6099-6105.
21. He, L., Thomson, J. M., Hemann, M. T., Hernando-Monge, E. et al., A microRNA polycistron as a potential human oncogene. Nature 2005, 435, 828-833.
22. Grillari, J., Hackl, M., Grillari-Voglauer, R., miR-17-92 cluster: ups and down in cancer and aging. Biogerontology 2010, 11, 501-506.
23. O'Donnell, K. A., Wentzel, E. A., Zeller, K. I., Dang, C. V., Mendell, J. T., c-Myc-regulated microRNAs modulate E2F1 expression. Nature 2005, 435, 839-843.
24. Dews, M., Homayouni, A., Yu, D., Murphy, D. et al., Augmentation of tumor angiogenesis by a Myc-activated microRNA cluster. Nat. Genet. 2006, 38, 1060-1065.
25. Hackl, M., Brunner, S., Fortschegger, K., Schreiner, C. et al., miR-17, miR-19b, miR-20a, and miR-106a are down-regulated in human aging. Aging Cell 2010, 9, 291-296.
26. Lu, Y., Thomson, J. M., Wong, H. Y. F., Hammond, S. M., Hogan, B. L. M., Transgenic over-expression of the microRNA miR-17-92 cluster promotes proliferation and inhibits differentiation of lung epithelial progenitor cells. Dev. Biol. 2007, 310, 442-453.
27. Taguchi, A., Yanagisawa, K., Tanaka, M., Cao, K. et al., Identification of hypoxia-inducible factor-1 alpha as a novel target for miR-17-92 microRNA cluster. Cancer Res. 2008, 68, 5540-5545.
28. Pichiorri, F., Suh, S. S., Ladetto, M., Kuehl, M. et al., MicroRNAs regulate critical genes associated with multiple myeloma pathogenesis. Proc. Natl. Acad. Sci. USA 2008, 105, 12885-12890.
29. Olive, V., Bennett, M. J., Walker, J. C., Ma, C. et al., miR-19 is a key oncogenic component of mir-17-92. Genes Dev. 2009, 23, 2839-2849.
30. Manni, I., Artuso, S., Careccia, S., Rizzo, M. G. et al., The microRNA miR-92 increases proliferation of myeloid cells and by targeting p63 modulates the abundance of its isoforms. FASEB J. 2009, 23, 3957-3966.
31. Junutula, J. R., De Maziére, A. M., Peden, A. A., Ervin, K. E. et al., Rab14 is involved in membrane trafficking between the Golgi complex and endosomes. Mol. Biol. Cell 2004, 15, 2218-2229.
32. Kitt, K. N., Hernandez-Deviez, D., Ballantyne, S. D., Spiliotis, E. T. et al., Rab14 regulates apical targeting in polarized epithelial cells. Traffic 2008, 9, 1218-1231.
33. Kyei, G. B., Vergne, I., Chua, J., Roberts, E. et al., Rab14 is critical for maintenance of Mycobacterium tuberculosis phagosome maturation arrest. EMBO J. 2006, 25, 5250-5259.
34. Gou, D., Mishra, A., Weng, T., Su, L. et al., Annexin A2 interactions with Rab14 in alveolar type II cells. J. Biol. Chem. 2008, 283, 13156-13164.
35. Wang, L. H., Strittmatter, S. M., A family of rat CRMP genes is differentially expressed in the nervous system. J. Neurosci. 1996, 16, 6197-6207.
36. Quinn, C. C., Gray, G. E., Hockfield, S., A family of proteins implicated in axon guidance and outgrowth. J. Neurobiol. 1999, 41, 158-164.
37. Yoshida, H., Watanabe, A., Ihara, Y., Collapsin response mediator protein-2 is associated with neurofibrillary tangles in Alzheimer's disease. J. Biol. Chem. 1998, 273, 9761-9768.
38. Barzilai, A., Daily, D., Zilkha-Falb, R., Ziv, I. et al., The molecular mechanisms of dopamine toxicity. Adv. Neurol. 2003, 91, 73-82.
39. Johnston-Wilson, N. L., Sims, C. D., Hofmann, J. P., Anderson, L. et al., Disease-specific alterations in frontal cortex brain proteins in schizophrenia, bipolar disorder, and major depressive disorder. Mol. Psychiatr. 2000, 5, 142-149.
40. Chen, A., Liao, W. P., Lu, Q., Wong, W. S. F., Wong, P. T. H., Upregulation of dihydropyrimidinase-related protein 2, spectrin alpha II chain, heat shock cognate protein 70 pseudogene 1 and tropomodulin 2 after focal cerebral ischemia in rats - A proteomics approach. Neurochem. Int. 2007, 50, 1078-1086.
41. Indraswari, F., Wong, P. T. H., Yap, E., Ng, Y. K., Dheen, S. T., Upregulation of Dpysl2 and Spna2 gene expression in the rat brain after ischemic stroke. Neurochem. Int. 2009, 55, 235-242.
42. Kobeissy, F. H., Ottens, A. K., Zhang, Z. Q., Liu, M. C. et al., Novel differential neuroproteomics analysis of traumatic brain injury in rats. Mol. Cell. Proteom. 2006, 5, 1887-1898.
43. Matsuda-Matsumoto, H., Lwazaki, T., Kashem, M. A., Harper, C., Matsumoto, I., Differential protein expression profiles in the hippocampus of human alcoholics. Neurochem. Int. 2007, 51, 370-376.
44. Carter, C. J., Multiple genes and factors associated with bipolar disorder converge on growth factor and stress activated kinase pathways controlling translation initiation: implications for oligodendrocyte viability. Neurochem. Int. 2007, 50, 461-490.
45. Vasudevan, S., Tong, Y. C., Steitz, J. A., Switching from repression to activation: microRNAs can up-regulate translation. Science 2007, 318, 1931-1934.