Soil particle surface electrochemical property effects on abundance of ammonia-oxidizing bacteria and ammonia-oxidizing archaea, NH4+ activity, and net nitrification in an acid soil

Soil Biology and Biochemistry

Volumn 43, Issue 11, 2011, Pages 2215-2221

  Jiang, X ^a,b   Ma, Y ^a   Yuan, J ^a   Wright, A L ^b   Li, H ^a  

^a SOUTHWEST UNIVERSITY   (China)

^b UNIVERSITY OF FLORIDA   (United States)

Author keywords

Acid soil; Montmorillonite; Nitrifying microorganism; Surface parameters

Indexed keywords

ACID SOILS; AMMONIA OXIDIZING BACTERIA; APPLICATION RATES; ARCHAEA; ARCHAEAL; CA-MONTMORILLONITE; CHARGE QUANTITY; ELECTRIC FIELD STRENGTH; ELECTROCHEMICAL PARAMETERS; GENE COPY NUMBER; KINETIC PATTERNS; NITRIFICATION PROCESS; NITRIFYING MICROORGANISM; SOIL PARTICLES; SOIL SURFACES; SPECIFIC AREAS; SURFACE PARAMETERS; TIME-DEPENDENT;

AMMONIA; BACTERIA; BACTERIOLOGY; CALCIUM SILICATE; CHARGED PARTICLES; CLAY MINERALS; DENITRIFICATION; ELECTRIC FIELDS; ELECTROCHEMICAL PROPERTIES; GENES; KINETICS; NITRIFICATION; OXIDATION; SURFACE PROPERTIES;

SOILS;

ABUNDANCE; ACID SOIL; AMMONIUM; ELECTROCHEMICAL METHOD; MONTMORILLONITE; NITRIFICATION; OXISOL; PARTICLE SIZE; PH; PROKARYOTE; SOIL AMENDMENT; SOIL SURFACE; SUBTROPICAL REGION; TIME DEPENDENT BEHAVIOR;

ARCHAEA; BACTERIA (MICROORGANISMS); NITROSOMONADALES;

EID: 80051615979     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2011.07.014     Document Type: Article

References (55)

1. Aciego Pietri J.C., Brookes P.C. Nitrogen mineralisation along a pH gradient of a silty loam UK soil. Soil Biology & Biochemistry 2008, 40:797-802.
2. Aakra Å., Hesselsøe M., Bakken L.R. Surface attachment of ammonia-oxidizing bacteria in soil. Microbial Ecology 2000, 39:222-235.
3. Alva A.K., Sumner M.E., Miller W.P. Relationship between ionic strength and electrical conductivity for soil solutions. Soil Science 1991, 152:239-242.
4. Arp D.J., Sayavedra-Soto L.A., Hommes N.G. Molecular biology and biochemistry of ammonia oxidation by Nitrosomonas europaea. Archives of Microbiology 2002, 178:250-255.
5. Bäckman J.S.K., Hermansson A., Tebbe C.C., Lindgren P.E. Liming induced growth of a diverse flora of ammonia-oxidising bacteria in acid spruce forest soil as determined by SSCP and DGGE. Soil Biology & Biochemistry 2003, 35:1337-1347.
6. Balser T.C., Firestone M.K. Linking microbial community composition and soil processes in a California annual grassland and mixed-conifer forest. Biogeochemistry 2005, 73:395-415.
7. Beman J.M., Francis C.A. Diversity of ammonia-oxidizing archaea and bacteria in the sediments of a hypernutrified subtropical estuary: Bahía del Tóbari, Mexico. Applied and Environmental Microbiology 2006, 72:7767-7777.
8. Soil Chemistry 1985, John Wiley & Sons, New York. second ed. H.L. Bohn, B.L. McNeal, G.A. O'Connor (Eds.).
9. Bottomley P.J., Taylor A.E., Boyle S.A., McMahon S.K., Rich J.J., Cromack K., Myrold D.D. Responses of nitrification and ammonia-oxidizing bacteria to reciprocal transfers of soil between adjacent coniferous forest and meadow vegetation in the Cascade Mountains of Oregon. Microbial Ecology 2004, 48:500-508.
10. Carter D.L., Mortland M.M., Kemper W.D. Specific surface. pp. 413-423. Agron. Monogr 1986, vol. 9. ASA and SSSA, Madison, WI. second ed. A. Klute (Ed.).
11. Compton J.E., Watrud L.S., Porteous L.A., DeGrood S. Response of soil microbial biomass and community composition to chronic nitrogen additions at Harvard forest. Forest Ecology and Management 2004, 196:143-158.
12. Curtin D., Campbell C.A., Jalil A. Effects of acidity on mineralization: pH-dependence of organic matter mineralization in weakly acidic soils. Soil Biology & Biochemistry 1998, 30:57-64.
13. De Boer W., Gunnewiek P.A., Laanbroek H.J. Ammonium-oxidation at low pH by a chemolithotrophic bacterium belonging to the genus Nitrosospira. Soil Biology & Biochemistry 1995, 27:127-132.
14. De Boer W., Gunnewiek P.J.A.K., Parkinson D. Variability of N mineralization and nitrification in a simple, simulated microbial forest soil community. Soil Biology & Biochemistry 1996, 28:203-211.
15. De Boer W., Kester R.A. Variability of nitrification potentials in patches of undergrowth vegetation in primary Scots pine stands. Forest Ecology and Management 1996, 86:97-103.
16. De Boer W., Kowalchuk G.A. Nitrification in acid soils: micro-organisms and mechanisms. Soil Biology & Biochemistry 2001, 33:853-866.
17. Di H.J., Cameron K.C., Shen J.P., Winefield C.S., O'Callaghan M., Bowatte S., He J.Z. Nitrification driven by bacteria and not archaea in nitrogen-rich grassland soils. Nature Geoscience 2009, 2:621-624.
18. Francis C.A., Roberts K.J., Beman J.M., Santoro A.E., Oakley B.B. Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. Proceedings of the National Academy of Sciences of the United States of America 2005, 102:14683-14688.
19. Goldberg S.S., Gainey P.L. Role of surface phenomena in nitrification. Soil Science 1955, 80:43-55.
20. Griffin G.P., Jurinak J.J. Estimation of activity coefficients from the electrical conductivity of natural aquatic systems and soil extracts. Soil Science 1973, 116:26-30.
21. Heilman M.D., Carter D.L., Gonzalez C.L. The ethylene glycol monoethyl ether (Egme) technique for determining soil surface area. Soil Science 1965, 100:409-413.
22. Hou J., Li H., Zhu H., Wu L. Determination of clay surface potential: a more reliable approach. Soil Science Society of America Journal 2009, 73:1658-1663.
23. Jia Z.J., Conrad R. Bacteria rather than Archaea dominate microbial ammonia oxidation in an agricultural soil. Environment Microbiology 2009, 11:1658-1671.
24. Jiang Q., Bakken L.R. Nitrous oxide production and methane oxidation by different ammonia-oxidizing bacteria. Applied and Environmental Microbiology 1999, 65:2679-2684.
25. Keen G.A., Prosser J.I. Interrelationship between pH and surface growth of Nitrobacter. Soil Biology & Biochemistry 1987, 19:665-672.
26. Koch A.L. The macroeconomics of bacterial growth. pp. 1-42. Bacteria in their Natural Environments 1985, Academic Press, San Diego. M. Fletcher, G.D. Floodgate (Eds.).
27. Koops H.-P., Purkhold U., Pommerening-Röser A., Timmermann G., Wagner M. The lithotrophic ammonia-oxidizing bacteria. A Handbook on the Biology of Bacteria 2007, vol. 5:778-811. Springer-Verlag, New York, USA. ProteobacteriaAlpha, B. Subclass, M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer, E. Stackebrandt (Eds.).
28. Kristen M.D., Steven E.L., Mary K.F. Bacterial quorum sensing and nitrogen cycling in rhizosphere soil. FEMS Microbiology Ecology 2008, 66:197-207.
29. Lam P., Jensen M.M., Lavik G., McGinnis B.M., Schubert C.J., Amann R., Thamdrup B., Kuypers M.M.M. Linking crenarchaeal and bacterial nitrification to anammox in the Black Sea. Proceedings of the National Academy of Sciences of the United States of America 2007, 104:7104-7109.
30. Lees H., Quastel J.H. Biochemistry of nitrification in soil (II). Biochemical Journal 1946, 40:815-823.
31. Leininger S., Urich T., Schloter M., Schwark L., Qi J., Nicol G.W., Prosser J.I., Schuster S.C., Schleper C. Archaea predominate among ammonia oxidizing prokaryotes in soils. Nature 2006, 442:806-809.
32. Li H., Qing C.L., Wei S.Q., Jiang X.J. An approach to the method for determination of surface potential on solid/liquid interface: theory. Journal of Colloid and Interface Science 2004, 275:172-176.
33. Low P.F. The swelling of clay: II. Montmorillonites. Soil Science Society of America Journal 1980, 44:667-676.
34. Nugroho R.A., Röling W.F.M., Laverman A.M., Verhoef H.A. Presence of Nitrosospira cluster 2 bacteria corresponds to N transformation rates in nine acid Scots pine forest soils. FEMS Microbiology Ecology 2005, 53:472-481.
35. Nugroho R.A., Röling W.F.M., Laverman A.M., Verhoef H.A. Low nitrification rates in acid Scots pine forest soils are due to pH-related factors. Microbial Ecology 2007, 53:89-97.
36. Nugroho R.A., Röling W.F.M., van Straalen N.M., Verhoef H.A. Changes in nitrification and bacterial community structure upon crossinoculation of Scots pine forest soils with different initial nitrification rates. Soil Biology & Biochemistry 2009, 41:243-250.
37. Paul E.A., Clark F.E. Reduction and transport of nitrate. pp. 81-85. Soil microbiology and biochemistry 1989, vol. 9. Academic Press, New York.
38. Roesch L.F.W., Fulthorpe R.R., Riva A., Casella G., Hadwin A.K.M., Kent A.D., Daroub S.H., Camargo F.A.O., Farmerie W.G., Triplett E.W. Pyrosequencing enumerates and contrasts soil microbial diversity. The ISME Journal 2007, 1:283-290.
39. Ross D.S., Hales H.C. Sampling-induced increases in net nitrification in the Brush Brook (Vermont) watershed. Soil Science Society of America Journal 2003, 67:318-326.
40. Schauder S., Bassler B.L. The languages of bacteria. Genes & Development 2001, 15:1468-1480.
41. Schleper C., Jurgens G., Jonuscheit M. Genomic studies of uncultivated archaea. Nature Reviews Microbiology 2005, 3:479-488.
42. Sparks D.L. Soil Physical Chemistry 1999, CRC Press, New York, vol. second ed.
43. Stotzky G., Rem L.T. Influence of clay minerals on microorganisms. I. Montmorillonite and kaolinite on bacteria. Canadian Journal of Microbiology 1966, 12:547-563.
44. Strayer R.F., Lin C.J., Alexander M. Effect of simulated acid rain on nitrification and nitrogen mineralization in forest soils. Journal of Environmental Quality 1981, 10:547-551.
45. Suzuki I., Dular U., Kwok S.C. Ammonia or ammonium ion as substrate for oxidation by Nitrosomonas europaea cells and extracts. Journal of Bacteriology 1974, 120:556-558.
46. Tappe W., Laverman A., Bohland M., Braster M., Rittershaus S., Groeneweg J., van Verseveld H.W. Maintenance energy demand and starvation recovery dynamics of Nitrosomonas europaea and Nitrobacter winogradskyi cultivated in a retentostat with complete biomass retention. American Society for Microbiology 1999, 65:2471-2477.
47. Tolli J., King G.M. Diversity and structure of bacterial chemolithotrophic communities in pine forest and agroecosystem soils. Applied and Environmental Microbiology 2005, 71:8411-8418.
48. van Loosdrecht M.C., Lyklema J., Norde W., Zehnder A.J. Influence of interfaces on microbial activity. Microbiology and Molecular Biology Review 1990, 54:75-87.
49. van Niel E.W.J., Arts P.A.M., Wesselink B.J., Robertson L.A., Kuenen J.G. Competition between heterotrophic and autotrophic nitrifiers for ammonia in chemostat cultures. FEMS Microbiology Ecology 1993, 102:109-118.
50. Verhagen F.J.M., Duyts H., Laanbroek H.J. Competition for ammonium between nitrifying and heterotrophic bacteria in continuously percolated soil columns. Applied and Environmental Microbiology 1992, 58:3303-3311.
51. Verhagen F.J.M., Laanbroek H.J. Competition for ammonium between nitrifying and heterotrophic bacteria in dual energy-limited chemostats. Applied and Environmental Microbiology 1991, 57:3255-3263.
52. Wang F.L., Alva A.K. Ammonium adsorption and desorption in sandy soils. Soil Science Society of America Journal 2000, 69:1669-1674.
53. Wheatley R.E., Caul S., Crabb D., Daniell T.J., Griffiths B.S., Ritz K. Microbial population dynamics related to temporal variations in nitrification in three arable fields. European Journal of Soil Science 2003, 54:707-714.
54. Wuchter C., Abbas B., Coolen M.J.L., Herfort L., van Bleijswijk J., Timmers P., Strous M., Teira E., Herndl G.J., Middelburg J.J., Schouten S., Sinninghe Damsté J.S. Archaeal nitrification in the ocean. Proceedings of the National Academy of Sciences of the United States of America 2006, 103:12317-12322.
55. Zhao W., Cai Z., Xu Z. Does ammonium-based N addition influence nitrification and acidification in humid subtropical soils of China?. Plant and Soil 2007, 297:213-221.