Allopolyploid origins of the Galeopsis tetraploids - revisiting Müntzing's classical textbook example using molecular tools

New Phytologist

Volumn 191, Issue 4, 2011, Pages 1150-1167

  Bendiksby, Mika ^a   Tribsch, Andreas ^b   Borgen, Liv ^a   Trávníček, Pavel ^c,d   Brysting, Anne K ^a  

^a UNIVERSITY OF OSLO   (Norway)

^b UNIVERSITY OF SALZBURG   (Austria)

^c INSTITUTE OF BOTANY   (Czech Republic)

^d CHARLES UNIVERSITY   (Czech Republic)

Author keywords

Allopolyploidy; Amplified fragment length polymorphisms (AFLPs); CpDNA; Flow cytometry; Molecular phylogenetics; Neighbor networks; NRPA2; Subgenus Galeopsis

Indexed keywords

CHLOROPLAST DNA; PLANT DNA;

DICOTYLEDON; FLOW CYTOMETRY; GENE FLOW; GENETIC MARKER; GENOME; HYBRIDIZATION; INTROGRESSION; MITOCHONDRIAL DNA; MOLECULAR ANALYSIS; PHYLOGENETICS; POLYMORPHISM; POLYPLOIDY; SPECIATION (BIOLOGY); TAXONOMY; TEXTBOOK;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; BAYES THEOREM; CELL NUCLEUS; CHLOROPLAST; DNA SEQUENCE; FLOW CYTOMETRY; GENETIC MARKER; GENETICS; LAMIACEAE; METHODOLOGY; PHYLOGENY; PLANT GENE; POLYPLOIDY;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; BAYES THEOREM; CELL NUCLEUS; CHLOROPLASTS; DNA, CHLOROPLAST; DNA, PLANT; FLOW CYTOMETRY; GENES, PLANT; GENETIC MARKERS; LAMIACEAE; PHYLOGENY; POLYPLOIDY; SEQUENCE ANALYSIS, DNA;

GALEOPSIS BIFIDA; GALEOPSIS TETRAHIT;

EID: 80051602070     PISSN: 0028646X     EISSN: 14698137     Source Type: Journal    
DOI: 10.1111/j.1469-8137.2011.03753.x     Document Type: Article

References (78)

1. Bendiksby M, Thorbek LB, Scheen AC, Lindqvist C, Ryding O. 2011. An updated phylogeny and classification of Lamiaceae subfamily Lamioideae. Taxon 60: 471-484.
2. Benoit PM, Stace CA. 1975. Galeopsis L. Stace CA, ed. Hybridization and the flora of the British Isles. London, UK: Academic Press, 396-397.
3. Bonin A, Bellemain E, Eidesen PB, Pompanon F, Brochmann C, Taberlet P. 2004. How to track and assess genotyping errors in population genetics studies. Molecular Ecology 13: 3261-3273.
4. Briquet J. 1893. Monographie du genre Galeopsis. Brusselles, Belgium: L'Académie Royale des Sciences, des Lettres et des Beaux-arts de Belgique.
5. Brysting AK, Mathiesen C, Marcussen T. 2011. Challenges in polyploid phylogenetic reconstruction: a case story from the arctic-alpine Cerastium alpinum complex. Taxon 60: 333-347.
6. Brysting AK, Oxelman B, Huber KT, Moulton V, Brochmann C. 2007. Untangling complex histories of genome mergings in high polyploids. Systematic Biology 56: 467-476.
7. Chapman MA, Abbott RJ. 2010. Introgression of fitness genes across a ploidy barrier. New Phytologist 186: 63-71.
8. Coyne JA, Orr HA. 2004. Speciation. Sunderland, MA, USA: Sinauer Associates, Inc.
9. Dice LR. 1945. Measures of the amount of ecologic association between species. Ecology 26: 297-302.
10. Doležel J, Greilhuber J, Lucretti S, Meister A, Lysák MA, Nardii L, Obermayer R. 1998. Plant genome size estimation by flow cytometry: inter-laboratory comparison. Annals of Botany 82(Suppl. A): 17-26.
11. Doležel J, Greilhuber J, Suda J. 2007. Estimation of nuclear DNA content in plant using flow cytometry. Nature Protocols 2: 2233-2244.
12. Doyle JJ, Doyle JL, Rauscher JT, Brown AHD. 2004. Evolution of the perennial soybean polyploid complex (Glycine subgenus Glycine): a study of contrasts. Biological Journal of the Linnean Society 82: 583-597.
13. Doyle JJ, Egan AN. 2010. Dating the origins of polyploidy events. New Phytologist 186: 73-85.
14. Ehrich D. 2006. AFLPDAT: a collection of R functions for convenient handling of AFLP data. Molecular Ecology Notes 6: 603-604.
15. Ehrich D. 2009. Structure-sum. [Script and documentation] [WWW document]. URL [accessed 23 March 2011].
16. Falush D, Stephens M, Pritchard JK. 2007. Inference of population structure using multilocus genotype data: dominant markers and null alleles. Molecular Ecology Notes 7: 574-578.
17. Farris J, Albert VA, Källersjö M, Lipscomb D, Kluge AG. 1996. Parsimony jackknifing outperforms neighbor-joining. Cladistics 12: 99-124.
18. Fay MF, Cowan RS, Leitch IJ. 2005. The effects of nuclear content (C-value) on the utility of AFLP fingerprints. Annals of Botany 95: 237-246.
19. Fortune PM, Pourtau N, Viron N, Ainouche ML. 2008. Molecular phylogeny and reticulate origins of the polyploid Bromus species from the section Genea (Poaceae). American Journal of Botany 95: 454-464.
20. Frajman B, Oxelman B. 2007. Reticulate phylogenetics and phytogeographical structure of Heliosperma (Sileneae, Caryophyllaceae) inferred from chloroplast and nuclear DNA sequences. Molecular Phylogenetics and Evolution 43: 140-155.
21. Futuyma DJ. 2009. Evolution, 2nd edn. Sunderland, MA, USA: Sinauer Associates, Inc.
22. Goloboff PA, Farris JS, Nixon K. 2003. TNT: tree analysis using new technology. [Program and documentation] [WWW document]. URL [accessed 23 March 2011].
23. Govaerts R, Paton A, Harvey Y, Navarro T. 2010. World checklist of Lamiaceae & Verbenaceae. The Board of Trustees of the Royal Botanic Gardens, Kew [WWW document] URL [accessed 23 March 2011].
24. Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
25. Harley RM, Atkins S, Budantsev AL, Cantino PD, Conn BJ, Grayer R, Harley MM, de Kok R, Krestovskaya T, Morales R et al. 2004. Labiatae. Kadereit JW, ed. VII Flowering plants - dicotyledons. Lamiales (except Acanthaceae including Avicenniaceae). Berlin, Germany: Springer, 167-225.
26. Hedrén M, Fay MF, Chase MW. 2001. Amplified fragment length polymorphisms (AFLP) reveal details of polyploid evolution in Dactylorhiza (Orchidaceae). American Journal of Botany 88: 1868-1880.
27. Hegi G. 1927. Illustrerte flora von Mittle-Europa. München, Germany: J.F. Lehmanns Verlag.
28. Hendry AP. 2009. Evolutionary biology: speciation. Nature 458: 162-164.
29. Huelsenbeck JP, Ronquist F. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
30. Husband BC, Sabara H. 2003. Reproductive isolation between autotetraploids and their diploid progenitors in fireweed, Chamerion angustifolium (Onagraceae). Phytologist 161: 703-713.
31. Huson DH, Bryant D. 2006. Application of phylogenetic networks in evolutionary studies. Molecular Biology and Evolution 23: 254-267.
32. Kim M, Cui M-L, Cubas P, Gillies A, Lee K, Chapman MA, Abbott RJ, Coen E. 2008. Regulatory genes control a key morphological and ecological trait transferred between species. Science 322: 1116-1119.
33. Koh J, Soltis PS, Soltis DE. 2010. Homeolog loss and expression changes in natural populations of the recently and repeatedly formed allotetraploid Tragopogon mirus (Asteraceae). BMC Genomics 11: 97.
34. Leitch AR, Leitch IJ. 2008. Genomic plasticity and the diversity of polyploid plants. Science 320: 481-483.
35. Lihova J, Marhold K, Tribsch A, Stuessy TF. 2004. Morphometric and AFLP re-evaluation of tetraploid Cardamine amara (Brassicaceae) in the Mediterranean. Systematic Botany 29: 134-146.
36. Liu B, Brubaker CL, Mergeai G, Cronn RC, Wendel JF. 2001. Polyploid formation in cotton is not accompanied by rapid genomic changes. Genome 44: 321-330.
37. Madlung A, Masuelli RW, Watson B, Reynolds SH, Davison J, Comai L. 2002. Remodeling of DNA methylation and phenotypic and transcriptional changes in synthetic Arabidopsis allotetraploids. Plant Physiology 129: 733-746.
38. Mason-Gamer RJ. 2008. Allohexaploidy, introgression, and the complex phylogenetic history of Elymus repens (Poaceae). Molecular Phylogenetics 47: 598-611.
39. Meimberg H, Rice KJ, Milan NF, Njoku CC, McKay JK. 2009. Multiple origins promote the ecological amplitude of allopolyploid Aegilops (Poaceae). American Journal of Botany 96: 1262-1273.
40. Meusel H, Jäger EJ, Rauschert SW, Weiner E. 1978. Vergleichende Chorologie der zentraleuropäischen Flora. Text u. Karten. Bd. 2. Jena, Germany: VEB Fischer.
41. Müller K. 2005. SeqState - primer design and sequence statistics for phylogenetic DNA data sets. Applied Bioinformatics 4: 65-69.
42. Müntzing A. 1927. Chromosome number, nuclear volume and pollen grain size in Galeopsis. Hereditas 10: 241-260.
43. Müntzing A. 1929. Cases of partial sterility in crosses within a Linnean species. Hereditas 12: 297-319.
44. Müntzing A. 1930a. Outlines to a genetic monograph of the genus Galeopsis with special reference to the nature and inheritance of partial sterility. Hereditas 13: 185-341.
45. Müntzing A. 1930b. Über Chromosomenvermehrung in Galeopsis-Kreuzungen und ihre phylogenetische Bedeutung. Hereditas 14: 153-172.
46. Müntzing A. 1932. Cyto-genetic investigations on synthetic Galeopsis tetrahit. Hereditas 16: 105-154.
47. Müntzing A. 1941. New material and cross combinations in Galeopsis after colchicine-induced chromosome doubling. Hereditas 27: 193-201.
48. Müntzing A. 1943. Fertility improvement by recombination in autotetraploid Galeopsis pubescens. Hereditas 29: 201-204.
49. Müntzing A. 1969. On the methods of experimental taxonomy. American Journal of Botany 56: 791-798.
50. Nylander JAA. 2004. MrModeltest v2. Program distributed by the author, 2nd edn. Uppsala, Sweden: Evolutionary Biology Centre, Uppsala University.
51. Ownbey M, McCollum GD. 1953. Cytoplasmic inheritance and reciprocal amphiploidy in Tragopogon. American Journal of Botany 40: 788-796.
52. Paun O, Fay MF, Soltis DE, Chase MW. 2007. Genetic and epigenetic alterations after hybridization and genome doubling. Taxon 56: 649-656.
53. Pogan E, Czapik R, Jankun A, Kuta E. 1982. Further studies in chromosome numbers of Polish angiosperms. Part XV. Acta Biologica Cracoviensia, Series Botanica 24: 113-126.
54. Popp M, Oxelman B. 2004. Evolution of a RNA polymerase gene family in Silene (Caryophyllaceae) - incomplete concerted evolution and topological congruence among paralogues. Systematic Biology 53: 914-932.
55. Pritchard JK, Stephens M, Donnelly P. 2000. Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
56. R Development Core Team. 2010. R: a language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing.
57. van Raamsdonk LWD, Vrielink-van Ginkel M, Kik C. 2000. Phylogeny reconstruction and hybrid analysis in Allium subgenus Rhizirideum. Theoretical Applied Genetics 100: 1000-1009.
58. Reichenbach HGL. 18301832. Familia XXXI. Labiatae. Reichenbach L, ed. Flora Germanica excursoria. Leipzig, Germany: Carolum Cnobloch: 305-335.
59. Rieseberg LH, Whitton J, Linder CR. 1996. Molecular marker incongruence in plant hybrid zones and phylogenetic trees. Acta Botanical Neerlandica 45: 243-262.
60. Roberts RJ, Vincze T, Posfai J, Macelis D. 2010. REBASE - a database for DNA restriction and modification: enzymes, genes and genomes. Nucleic Acids Research 38: D234-D23.
61. Ronquist F, Huelsenbeck JP. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
62. Salmon A, Ainouche ML, Wendel JF. 2005. Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae). Molecular Ecology 14: 1163-1175.
63. Scheen AC, Bendiksby M, Ryding O, Mathiesen C, Albert VA, Lindqvist C. 2010. Molecular phylogenetics, character evolution, and suprageneric classification of Lamioideae (Lamiaceae). Annals of the Missouri Botanical Garden 97: 191-217.
64. Schönswetter P, Suda J, Popp M, Weiss-Schneeweiss H, Brochmann C. 2007. Circumpolar phylogeography of Juncus biglumis (Juncaceae) inferred from AFLP fingerprints, cpDNA sequences, nuclear DNA content and chromosome numbers. Molecular Phylogenetics and Evolution 42: 92-103.
65. Simmons MP, Ochoterena H. 2000. Gaps as characters in sequence-based phylogenetic analyses. Systematic Biology 49: 369-381.
66. Slotte T, Huang HR, Lascoux M, Ceplitis A. 2008. Polyploid speciation did not confer instant reproductive isolation in Capsella (Brassicaceae). Molecular Biology and Evolution 25: 1472-1481.
67. Soltis DE, Buggs RJA, Doyle JJ, Soltis PS. 2010. What we still don't know about polyploidy. Taxon 59: 1387-1403.
68. Soltis DE, Soltis PS. 1999. Polyploidy: origins of species and genome evolution. Trends in Ecology and Evolution 14: 349-351.
69. Soltis DE, Soltis PS, Pires JC, Kovarik A, Tate JA. 2004. Recent and recurrent polyploidy in Tragopogon (Asteraceae): genetic, genomic, and cytogenetic comparisons. Biological Journal of the Linnean Society 82: 485-501.
70. Soltis PS, Soltis DE. 2009. The role of hybridization in plant speciation. Annual Review of Plant Biology 60: 561-588.
71. Ståhlberg D. 2009. Habitat differentiation, hybridization and gene flow patterns in mixed populations of diploid and autotetraploid Dactylorhiza maculata s.l. (Orchidaceae). Evolutionary Ecology 23: 295-328.
72. Stebbins GL. 1940. The significance of polyploidy in plant evolution. American Naturalist 74: 54-66.
73. Stebbins GL. 1971. Chromosomal evolution in higher plants. Reading, MA, USA: Addison-Wesle.
74. Symonds VV, Soltis PS, Soltis DE. 2010. Dynamics of polyploid formation in Tragopogon (Asteraceae): recurrent formation, gene flow, and population structure. Evolution 64: 1984-2003.
75. Thórsson T, Salmela E, Anamthawat-Jónsson K. 2001. Morphological, cytogenetic, and molecular evidence for introgressive hybridisation in birch. Journal of Heredity 92: 404-408.
76. Tomas-Bárberán FA, Gil MI, Ferreres F, Tomás-Lorente F. 1991. Correlations between flavonoid composition and infrageneric taxonomy of some European Galeopsis species. Phytochemistry 30: 3311-3314.
77. Vos P, Hogers R, Bleeker M, Reijans M, Vandelee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M et al. 1995. AFLP - a new technique for DNA-fingerprinting. Nucleic Acids Research 23: 4407-4414.
78. Wieffering JH. 1983. Chromosome numbers, scutellarin and iridoid patterns in the genus Galeopsis L. (Labiatae). Botanica Helvetica 93: 239-253.