Phylogeny reconstruction and hybrid analysis in Allium subgenus Rhizirideum

Theoretical and Applied Genetics

Volumn 100, Issue 7, 2000, Pages 1000-1009

  Van Raamsdonk, L W D ^a   Ginkel, M Vrielink Van ^a   Kik, C ^a  

^a WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

AFLP; Allium cepa; Allium roylei; Allium subgenus Rhizirideum; Hybrid Distance; nDNA; Onion; Phylogeny reconstruction

Indexed keywords

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; CELL NUCLEUS DNA; GENETIC DIVERSITY; GENETIC SELECTION; HYBRID; INTERSPECIFIC HYBRIDIZATION; PHYLOGENY;

ALLIUM; ALLIUM CEPA; ALLIUM FISTULOSUM; ALLIUM ROYLEI; OREIPRASON; PETROPRASON; RHIZIRIDEUM; SCHOENOPRASUM;

EID: 0342369516     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s001220051381     Document Type: Article

References (39)

1. Adams RP (1982) A comparison of multivariate methods for the detection of hybridization. Taxon 31:646-661
2. Arumuganathan K, Earle ED (1991) Nuclear DNA content of some important plant species. Pl Mol Biol Rep 9:208-218
3. Bradeen JM, Havey MJ (1995) Randomly amplified polymorphic DNA in bulk onion and its use to assess inbred integrity. J Am Soc Hort Sci 120:752-758
4. Brochmann C (1987) Evaluation of some methods for hybrid analysis, exemplified by hybridization in Argyranthum (Asteraceae). Nordic J Bot 7:609-630
5. Damme JMM van (1992) Hybridisation between wild and transgenic plants. In: Weverling J, Hekstra GP (eds) Ecological effects of genetically modified organisms, Netherlands Ecological Society, Arnhem, pp 81-92
6. Dubouzet JG, Shinoda K, Murata N (1997) Phylogeny of Allium L. subgenus Rhizirideum (G. Don ex Koch) Wendelbo according to dot-blot hybridization with randomly amplified DNA probes. Theor Appl Genet 95:1223-1228
7. El-Gadi A, Elkington TT (1977) Numerical taxonomic studies on species in Allium subgenus Rhizirideum. New Phytol 79:183-201
8. Friesen N, Pollner S, Bachmann K, Blattner FR (1999) RAPDs and noncoding chloroplast DNA reveal a single origin of the cultivated Allium fistulosum from A. altaicum (Alliaceae). Am J Bot 86:554-562
9. Hanelt P (1990) Taxonomy, evolution and history. In: Brewster JL, Rabinowitch HD (eds) Onions and allied crops, volume 1: biochemistry, food science, and minor crops. CRC Press Inc., Boca Raton, Florida, pp 1-26
10. Hanelt P, Fritsch R (1994) Notes on some infrageneric taxa in Allium L. Kew Bull 49:559-564
11. Hanelt P, SchultzeMotel J, Fritsch R, Kruse J, Maass HI, Ohle H, Pistrick K (1992) Infrageneric grouping of Allium - the Gatersleben approach. In: Hanelt P, HAmmer K, Knüpffer H (eds) The genus Allium - taxonomic problems and genetic resources. Institut für Pflanzengenetik und Kulturplanzenforschung, Gatersleben, Germany, pp 107-123
12. Havey MJ (1992) Restriction enzyme analysis of the chloroplast and nuclear 45s ribosomal DNA of Allium sections Cepa and Phyllodolon (Alliaceae). Pl Syst Evol 183:17-31
13. Heusden AW van, Ooijen JW van, Vrielink-van Ginkel R, Verbeek WHJ, Wietsma WA, Kik C (2000) Genetic mapping in an interspecific cross in Allium with amplified fragment length polymorphism (AFLP) markers. Theor Appl Genet 100:118-126
14. Hill M, Witsenboer H, Zabeau M, Vos P, Kesseli R, Michelmore R (1996) PCR-based fingerprinting using AFLPs as a tool for studying genetic relationships in Lactuca spp. Theor Appl Genet 93:1202-1210
15. Kardolus JP, Eck HJ van, Berg RG van den (1998) The potential of AFLPs in biosystematics: a first application in Solanum taxonomy. Pl Syst Evol 210:87-103
16. Keller ERJ, Schubert I, Fuchs J, Meister A (1996) Interspecific crosses of onion with distant Allium species and characterization of the presumed hybrids by means of flow cytometry, karyotype analysis and genomic in situ hybridization. Theor Appl Genet 92:417-424
17. Khrustaleva LI, Kik C (1998) Cytogenetical studies in the bridge cross Allium cepa × (A. fistulosum × A. roylei). Theor Appl Genet 96:8-14
18. Khrustaleva LI, Kik C (2000) Introgression of Allium fistulosum into A. cepa mediated by A. roylei. Theor Appl Genet 100: 17-26
19. Linne von Berg G, Samoylov A, Klaas M, Hanelt P (1996) Chloroplast DNA restriction analysis and the infrageneric grouping of Allium (Alliaceae). Plant Syst Evol 200:253-261
20. McDade L (1997) Hybrids and phylogenetic systematics. III. Comparison with distance methods. Systematic Bot 22:669-683
21. Meer QP van der, Vries JN de (1990) An intraspecific cross between Allium roylei Stearn and Allium cepa L., and its back-cross to A. cepa. Euphytica 47:29-31
22. Mes THM, Friesen N, Fritsch RM, Klaas M, Bachmann K (1997) Criteria for sampling in Allium based on chloroplast DNA PCR-RFLPs. Systematic Bot 22:701-712
23. Pejic I, Ajmone-Marsan P, Morgante M, Kozumplick V, Castiglioni P, Taramino G, Motto M (1998) Comparative analysis of genetic similarity among maize inbred lines detected by RFLPs, RAPDs, SSRs, and AFLPs. Theor Appl Genet 97: 1248-1255
24. Raamsdonk LWD van (1988) IRISsys: system for information regrouping to identify structures, package for multivariate data analysis, release 3.1. Manual (in Dutch). CPRO-DLO Wageningen
25. Raamsdonk LWD van (1995) The cytological and genetical mechanisms of plant domestication as exemplified by four crop models. Bot Rev 61:367-399
26. Raamsdonk LWD van (1999) A new measure for analysing hybrid speciation. In: Raamsdonk LWD van, Nijs JCM den (eds) Evolution in man-made habitats, Proc VIIth IOPB symposium (in press)
27. Raamsdonk LWD van, Vries T de (1992) Biosystematic studies in Allium L. section Cepa. Bot J Linn Soc 109:131-143
28. Raamsdonk LWD van, Wietsma WA, Vries JN de (1992) Crossing experiments in Allium L. section Cepa. Bot J Linn Soc 109:293-303
29. Raamsdonk LWD van, Smiech MP, Sandbrink JM (1997) Introgression explains incongruency between nuclear and chloroplast DNA-based phylogenies in Allium section Cepa. Bot J Linn Soc 123:91-108
30. Rieseberg LH, Wendel JF (1993) Introgression and its consequences in plants. In: Harrison RG (ed) Hybrid zones and the evolutionary process, Oxford University Press. New York, pp 70-109
31. Rouppe van de Voort J, Zandvoort van P, Eck HJ van, Folkertsma RT, Hutten RCB, Draaistra J, Gommers FJ, Jacobsen E, Helder J, Bakker J (1997) Use of allele specificity of comigrating AFLP markers to align genetic maps from different potato genotypes. Mol Gen Genet 255:438-447
32. Sanderson MJ, Donoghue MJ (1989) Patterns of variation in levels of homoplasy. Evolution 43:1781-1795
33. Stuessy TF (1990) Plant taxonomy. Columbia University Press, New York
34. Swofford D (1991) Phylogenetic analysis using parsimony, version 3.1
35. Vos P, Hogers R, Bleeker M, Reijans M, Lee T van de, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23:4407-4414
36. Vries JN de, Wietsma WA, Jongerius MC (1992) Introgression of characters from Allium roylei Stearn into A. cepa L. In: Hanelt P, Hammer K, Knüpffer H (eds) The genus Allium - taxonomic problems and genetic resources. Institut für Pflanzengenetik und Kulturpflanzenforschung, Gatersleben, Germany, pp 321-325
37. Wells H (1980) A distance coefficient as a hybridization index: an example using Mimulus longiflorus and M. flemingii (Scrophulariceae) from Santa Cruz, California. Taxon 29:53-65
38. Wilkie SE, Isaac PG, Slatter RJ (1993) Random amplified polymorphic DNA (RAPD) markers for genetic analysis in Allium. Theor Appl Genet 86:497-504
39. Zhu J, Gale MD, Quarrie S, Jackson MT, Bryan GJ (1998) AFLP markers for the study of rice biodiversity. Theor Appl Genet 96:602-611