-
1
-
-
0036241339
-
Gene loss, silencing and activation in a newly synthesized wheat allotetraploid
-
1462064, 11973318
-
Kashkush K, Feldman M, Levy AA. Gene loss, silencing and activation in a newly synthesized wheat allotetraploid. Genetics 2002, 160(4):1651-1659. 1462064, 11973318.
-
(2002)
Genetics
, vol.160
, Issue.4
, pp. 1651-1659
-
-
Kashkush, K.1
Feldman, M.2
Levy, A.A.3
-
3
-
-
34250674565
-
Evolution of duplicate gene expression in polyploid and hybrid plants
-
10.1093/jhered/esl061, 17208934
-
Adams KL. Evolution of duplicate gene expression in polyploid and hybrid plants. J Hered 2007, 98(2):136-141. 10.1093/jhered/esl061, 17208934.
-
(2007)
J Hered
, vol.98
, Issue.2
, pp. 136-141
-
-
Adams, K.L.1
-
4
-
-
0033198094
-
Polyploidy: recurrent formation and genome evolution
-
10.1016/S0169-5347(99)01638-9, 10441308
-
Soltis DE, Soltis PS. Polyploidy: recurrent formation and genome evolution. Trends Ecol Evol 1999, 14(9):348-352. 10.1016/S0169-5347(99)01638-9, 10441308.
-
(1999)
Trends Ecol Evol
, vol.14
, Issue.9
, pp. 348-352
-
-
Soltis, D.E.1
Soltis, P.S.2
-
5
-
-
0034500239
-
Polyploid incidence and evolution
-
10.1146/annurev.genet.34.1.401, 11092833
-
Otto SP, Whitton J. Polyploid incidence and evolution. Annu Rev Genet 2000, 34:401-437. 10.1146/annurev.genet.34.1.401, 11092833.
-
(2000)
Annu Rev Genet
, vol.34
, pp. 401-437
-
-
Otto, S.P.1
Whitton, J.2
-
6
-
-
0001255931
-
Polyploidy in angiosperms: Monocotyledons
-
New York: Plenum Press, Lewis WH
-
Goldblatt P. Polyploidy in angiosperms: Monocotyledons. Polyploidy: biological relevance 1980, 219-239. New York: Plenum Press, Lewis WH.
-
(1980)
Polyploidy: biological relevance
, pp. 219-239
-
-
Goldblatt, P.1
-
7
-
-
0004015351
-
Variation and evolution in plants
-
New York: Columbia University Press
-
Stebbins GL. Variation and evolution in plants. 1950, New York: Columbia University Press.
-
(1950)
-
-
Stebbins, G.L.1
-
8
-
-
0347388384
-
Advances in the study of polyploidy since plant speciation
-
Soltis DE, Soltis PS, Tate JA. Advances in the study of polyploidy since plant speciation. New Phytol 2003, 161:173-191.
-
(2003)
New Phytol
, vol.161
, pp. 173-191
-
-
Soltis, D.E.1
Soltis, P.S.2
Tate, J.A.3
-
9
-
-
0028184403
-
Stomatal size in fossil plants: evidence for polyploidy in majority of angiosperms
-
10.1126/science.264.5157.421, 17836906
-
Masterson J. Stomatal size in fossil plants: evidence for polyploidy in majority of angiosperms. Science 1994, 264:421-423. 10.1126/science.264.5157.421, 17836906.
-
(1994)
Science
, vol.264
, pp. 421-423
-
-
Masterson, J.1
-
10
-
-
0036726239
-
Patterns of nucleotide substitution among simultaneously duplicated gene pairs in Arabidopsis thaliana
-
Zhang L, Vision TJ, Gaut BS. Patterns of nucleotide substitution among simultaneously duplicated gene pairs in Arabidopsis thaliana. Mol Biol Evol 2002, 19(9):1464-1473.
-
(2002)
Mol Biol Evol
, vol.19
, Issue.9
, pp. 1464-1473
-
-
Zhang, L.1
Vision, T.J.2
Gaut, B.S.3
-
11
-
-
0037313579
-
A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome
-
10.1101/gr.751803, 420368, 12566392
-
Blanc G, Hokamp K, Wolfe KH. A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome. Genome Res 2003, 13(2):137-144. 10.1101/gr.751803, 420368, 12566392.
-
(2003)
Genome Res
, vol.13
, Issue.2
, pp. 137-144
-
-
Blanc, G.1
Hokamp, K.2
Wolfe, K.H.3
-
12
-
-
0037468758
-
Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
-
10.1038/nature01521, 12660784
-
Bowers JE, Chapman BA, Rong J, Paterson AH. Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature 2003, 422(6930):433-438. 10.1038/nature01521, 12660784.
-
(2003)
Nature
, vol.422
, Issue.6930
, pp. 433-438
-
-
Bowers, J.E.1
Chapman, B.A.2
Rong, J.3
Paterson, A.H.4
-
13
-
-
0037500141
-
Evolution by gene duplication: an update
-
Zhang J. Evolution by gene duplication: an update. Trends Ecol Evol 2003, 18:292-298.
-
(2003)
Trends Ecol Evol
, vol.18
, pp. 292-298
-
-
Zhang, J.1
-
14
-
-
33847325742
-
How many genes are there in plants (... and why are they there)?
-
10.1016/j.pbi.2007.01.004, 17289424
-
Sterck L, Rombauts S, Vandepoele K, Rouze P, Peer Y. How many genes are there in plants (... and why are they there)?. Curr Opin Plant Biol 2007, 10(2):199-203. 10.1016/j.pbi.2007.01.004, 17289424.
-
(2007)
Curr Opin Plant Biol
, vol.10
, Issue.2
, pp. 199-203
-
-
Sterck, L.1
Rombauts, S.2
Vandepoele, K.3
Rouze, P.4
Peer, Y.5
-
15
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
10.1038/35048692, 11130711, Arabidopsis Genome Initiative
-
Arabidopsis Genome Initiative Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 2000, 408(6814):796-815. 10.1038/35048692, 11130711, Arabidopsis Genome Initiative.
-
(2000)
Nature
, vol.408
, Issue.6814
, pp. 796-815
-
-
-
16
-
-
0034671866
-
The origins of genomic duplications in Arabidopsis
-
10.1126/science.290.5499.2114, 11118139
-
Vision TJ, Brown DG, Tanksley SD. The origins of genomic duplications in Arabidopsis. Science 2000, 290(5499):2114-2117. 10.1126/science.290.5499.2114, 11118139.
-
(2000)
Science
, vol.290
, Issue.5499
, pp. 2114-2117
-
-
Vision, T.J.1
Brown, D.G.2
Tanksley, S.D.3
-
17
-
-
0037109058
-
The hidden duplication past of Arabidopsis thaliana
-
10.1073/pnas.212522399, 129725, 12374856
-
Simillion C, Vandepoele K, Van Montagu MC, Zabeau M, Peer Y. The hidden duplication past of Arabidopsis thaliana. Proc Natl Acad Sci USA 2002, 99(21):13627-13632. 10.1073/pnas.212522399, 129725, 12374856.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, Issue.21
, pp. 13627-13632
-
-
Simillion, C.1
Vandepoele, K.2
Van Montagu, M.C.3
Zabeau, M.4
Peer, Y.5
-
18
-
-
33748760611
-
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
-
10.1126/science.1128691, 16973872
-
Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, et al. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 2006, 313(5793):1596-1604. 10.1126/science.1128691, 16973872.
-
(2006)
Science
, vol.313
, Issue.5793
, pp. 1596-1604
-
-
Tuskan, G.A.1
Difazio, S.2
Jansson, S.3
Bohlmann, J.4
Grigoriev, I.5
Hellsten, U.6
Putnam, N.7
Ralph, S.8
Rombauts, S.9
Salamov, A.10
-
19
-
-
41249098849
-
A high quality draft consensus sequence of the genome of a heterozygous grapevine variety
-
10.1371/journal.pone.0001326, 2147077, 18094749
-
Velasco R, Zharkikh A, Troggio M, Cartwright DA, Cestaro A, Pruss D, Pindo M, Fitzgerald LM, Vezzulli S, Reid J, et al. A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. PLoS ONE 2007, 2(12):e1326. 10.1371/journal.pone.0001326, 2147077, 18094749.
-
(2007)
PLoS ONE
, vol.2
, Issue.12
-
-
Velasco, R.1
Zharkikh, A.2
Troggio, M.3
Cartwright, D.A.4
Cestaro, A.5
Pruss, D.6
Pindo, M.7
Fitzgerald, L.M.8
Vezzulli, S.9
Reid, J.10
-
20
-
-
34848886909
-
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
-
10.1038/nature06148, 17721507
-
Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 2007, 449(7161):463-467. 10.1038/nature06148, 17721507.
-
(2007)
Nature
, vol.449
, Issue.7161
, pp. 463-467
-
-
Jaillon, O.1
Aury, J.M.2
Noel, B.3
Policriti, A.4
Clepet, C.5
Casagrande, A.6
Choisne, N.7
Aubourg, S.8
Vitulo, N.9
Jubin, C.10
-
21
-
-
0034255126
-
Comparing sequenced segments of the tomato and Arabidopsis genomes: large-scale duplication followed by selective gene loss creates a network of synteny
-
10.1073/pnas.160271297, 16832, 10908680
-
Ku HM, Vision T, Liu J, Tanksley SD. Comparing sequenced segments of the tomato and Arabidopsis genomes: large-scale duplication followed by selective gene loss creates a network of synteny. Proc Natl Acad Sci USA 2000, 97(16):9121-9126. 10.1073/pnas.160271297, 16832, 10908680.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, Issue.16
, pp. 9121-9126
-
-
Ku, H.M.1
Vision, T.2
Liu, J.3
Tanksley, S.D.4
-
22
-
-
33744822985
-
Widespread genome duplications throughout the history of flowering plants
-
10.1101/gr.4825606, 1479859, 16702410
-
Cui L, Wall PK, Leebens-Mack JH, Lindsay BG, Soltis DE, Doyle JJ, Soltis PS, Carlson JE, Arumuganathan K, Barakat A, et al. Widespread genome duplications throughout the history of flowering plants. Genome Res 2006, 16(6):738-749. 10.1101/gr.4825606, 1479859, 16702410.
-
(2006)
Genome Res
, vol.16
, Issue.6
, pp. 738-749
-
-
Cui, L.1
Wall, P.K.2
Leebens-Mack, J.H.3
Lindsay, B.G.4
Soltis, D.E.5
Doyle, J.J.6
Soltis, P.S.7
Carlson, J.E.8
Arumuganathan, K.9
Barakat, A.10
-
23
-
-
33645023614
-
Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts
-
10.1038/nature04562, 16541074
-
Scannell DR, Byrne KP, Gordon JL, Wong S, Wolfe KH. Multiple rounds of speciation associated with reciprocal gene loss in polyploid yeasts. Nature 2006, 440(7082):341-345. 10.1038/nature04562, 16541074.
-
(2006)
Nature
, vol.440
, Issue.7082
, pp. 341-345
-
-
Scannell, D.R.1
Byrne, K.P.2
Gordon, J.L.3
Wong, S.4
Wolfe, K.H.5
-
24
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
10.1126/science.290.5494.1151, 11073452
-
Lynch M, Conery JS. The evolutionary fate and consequences of duplicate genes. Science 2000, 290:1151-1155. 10.1126/science.290.5494.1151, 11073452.
-
(2000)
Science
, vol.290
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.S.2
-
25
-
-
0036845822
-
Splitting pairs: the diverging fates of duplicated genes
-
10.1038/nrg928, 12415313
-
Prince VE, Pickett FB. Splitting pairs: the diverging fates of duplicated genes. Nat Rev Genet 2002, 3(11):827-837. 10.1038/nrg928, 12415313.
-
(2002)
Nat Rev Genet
, vol.3
, Issue.11
, pp. 827-837
-
-
Prince, V.E.1
Pickett, F.B.2
-
26
-
-
33746424003
-
Evolution and expression of homeologous loci in Tragopogon miscellus (Asteraceae), a recent and reciprocally formed allopolyploid
-
10.1534/genetics.106.057646, 1526671, 16648586
-
Tate JA, Ni Z, Scheen AC, Koh J, Gilbert CA, Lefkowitz D, Chen ZJ, Soltis PS, Soltis DE. Evolution and expression of homeologous loci in Tragopogon miscellus (Asteraceae), a recent and reciprocally formed allopolyploid. Genetics 2006, 173(3):1599-1611. 10.1534/genetics.106.057646, 1526671, 16648586.
-
(2006)
Genetics
, vol.173
, Issue.3
, pp. 1599-1611
-
-
Tate, J.A.1
Ni, Z.2
Scheen, A.C.3
Koh, J.4
Gilbert, C.A.5
Lefkowitz, D.6
Chen, Z.J.7
Soltis, P.S.8
Soltis, D.E.9
-
27
-
-
0032893932
-
Preservation of duplicate genes by complementary, degenerative mutations
-
1460548, 10101175
-
Force A, Lynch M, Pickett FB, Amores A, Yan YL, Postlethwait J. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 1999, 151(4):1531-1545. 1460548, 10101175.
-
(1999)
Genetics
, vol.151
, Issue.4
, pp. 1531-1545
-
-
Force, A.1
Lynch, M.2
Pickett, F.B.3
Amores, A.4
Yan, Y.L.5
Postlethwait, J.6
-
28
-
-
0034634395
-
The evolutionary fate of duplicated genes
-
10.1126/science.290.5494.1151, 11073452
-
Lynch M, Conery JS. The evolutionary fate of duplicated genes. Science 2000, 290:1151-1154. 10.1126/science.290.5494.1151, 11073452.
-
(2000)
Science
, vol.290
, pp. 1151-1154
-
-
Lynch, M.1
Conery, J.S.2
-
29
-
-
0033972072
-
The probability of duplicate gene preservation by subfunctionalization
-
1460895, 10629003
-
Lynch M, Force A. The probability of duplicate gene preservation by subfunctionalization. Genetics 2000, 154(1):459-473. 1460895, 10629003.
-
(2000)
Genetics
, vol.154
, Issue.1
, pp. 459-473
-
-
Lynch, M.1
Force, A.2
-
30
-
-
0035697435
-
The probability of preservation of a newly arisen gene duplicate
-
1461922, 11779815
-
Lynch M, O'Hely M, Walsh B, Force A. The probability of preservation of a newly arisen gene duplicate. Genetics 2001, 159(4):1789-1804. 1461922, 11779815.
-
(2001)
Genetics
, vol.159
, Issue.4
, pp. 1789-1804
-
-
Lynch, M.1
O'Hely, M.2
Walsh, B.3
Force, A.4
-
31
-
-
0345071423
-
Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing
-
10.1073/pnas.0630618100, 153610, 12665616
-
Adams KL, Cronn R, Percifield R, Wendel JF. Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing. Proc Natl Acad Sci USA 2003, 100(8):4649-4654. 10.1073/pnas.0630618100, 153610, 12665616.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, Issue.8
, pp. 4649-4654
-
-
Adams, K.L.1
Cronn, R.2
Percifield, R.3
Wendel, J.F.4
-
32
-
-
33745159638
-
Positive selection driving diversification in plant secondary metabolism
-
10.1073/pnas.0601738103, 1482576, 16754868
-
Benderoth M, Textor S, Windsor AJ, Mitchell-Olds T, Gershenzon J, Kroymann J. Positive selection driving diversification in plant secondary metabolism. Proc Natl Acad Sci USA 2006, 103(24):9118-9123. 10.1073/pnas.0601738103, 1482576, 16754868.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, Issue.24
, pp. 9118-9123
-
-
Benderoth, M.1
Textor, S.2
Windsor, A.J.3
Mitchell-Olds, T.4
Gershenzon, J.5
Kroymann, J.6
-
33
-
-
33646859660
-
Gene duplication, exon gain and neofunctionalization of OEP16-related genes in land plants
-
10.1111/j.1365-313X.2006.02741.x, 16709189
-
Drea SC, Lao NT, Wolfe KH, Kavanagh TA. Gene duplication, exon gain and neofunctionalization of OEP16-related genes in land plants. Plant J 2006, 46(5):723-735. 10.1111/j.1365-313X.2006.02741.x, 16709189.
-
(2006)
Plant J
, vol.46
, Issue.5
, pp. 723-735
-
-
Drea, S.C.1
Lao, N.T.2
Wolfe, K.H.3
Kavanagh, T.A.4
-
34
-
-
44449170092
-
Neofunctionalization of duplicated genes under the pressure of gene conversion
-
10.1534/genetics.107.082933, 2278071, 18245342
-
Teshima KM, Innan H. Neofunctionalization of duplicated genes under the pressure of gene conversion. Genetics 2008, 178(3):1385-1398. 10.1534/genetics.107.082933, 2278071, 18245342.
-
(2008)
Genetics
, vol.178
, Issue.3
, pp. 1385-1398
-
-
Teshima, K.M.1
Innan, H.2
-
35
-
-
34548527460
-
Comparative analysis indicates regulatory neofunctionalization of yeast duplicates
-
10.1186/gb-2007-8-4-r50, 1895995, 17411427
-
Tirosh I, Barkai N. Comparative analysis indicates regulatory neofunctionalization of yeast duplicates. Genome Biol 2007, 8(4):R50. 10.1186/gb-2007-8-4-r50, 1895995, 17411427.
-
(2007)
Genome Biol
, vol.8
, Issue.4
-
-
Tirosh, I.1
Barkai, N.2
-
36
-
-
34250648099
-
A novel family of lectins evolutionarily related to class V chitinases: an example of neofunctionalization in legumes
-
10.1104/pp.106.087981, 1914163, 17098856
-
Van Damme EJ, Culerrier R, Barre A, Alvarez R, Rouge P, Peumans WJ. A novel family of lectins evolutionarily related to class V chitinases: an example of neofunctionalization in legumes. Plant Physiol 2007, 144(2):662-672. 10.1104/pp.106.087981, 1914163, 17098856.
-
(2007)
Plant Physiol
, vol.144
, Issue.2
, pp. 662-672
-
-
Van Damme, E.J.1
Culerrier, R.2
Barre, A.3
Alvarez, R.4
Rouge, P.5
Peumans, W.J.6
-
37
-
-
0003515251
-
Evolution by Gene Duplication
-
Germany/New York: Springer-Verlag, Berlin/Heidelberg
-
Ohno S. Evolution by Gene Duplication. 1970, Germany/New York: Springer-Verlag, Berlin/Heidelberg.
-
(1970)
-
-
Ohno, S.1
-
38
-
-
49649114289
-
Escape from adaptive conflict after duplication in an anthocyanin pathway gene
-
Des Marais DL, Rausher MD. Escape from adaptive conflict after duplication in an anthocyanin pathway gene. Nature 2008, 454(7205):762-765.
-
(2008)
Nature
, vol.454
, Issue.7205
, pp. 762-765
-
-
Des Marais, D.L.1
Rausher, M.D.2
-
39
-
-
12844257041
-
Genomic changes in synthetic Arabidopsis polyploids
-
10.1111/j.1365-313X.2004.02297.x, 15634199
-
Madlung A, Tyagi AP, Watson B, Jiang H, Kagochi T, Doerge RW, Martienssen R, Comai L. Genomic changes in synthetic Arabidopsis polyploids. Plant J 2005, 41(2):221-230. 10.1111/j.1365-313X.2004.02297.x, 15634199.
-
(2005)
Plant J
, vol.41
, Issue.2
, pp. 221-230
-
-
Madlung, A.1
Tyagi, A.P.2
Watson, B.3
Jiang, H.4
Kagochi, T.5
Doerge, R.W.6
Martienssen, R.7
Comai, L.8
-
40
-
-
33644762929
-
Genomewide nonadditive gene regulation in Arabidopsis allotetraploids
-
10.1534/genetics.105.047894, 1456178, 16172500
-
Wang J, Tian L, Lee HS, Wei NE, Jiang H, Watson B, Madlung A, Osborn TC, Doerge RW, Comai L, et al. Genomewide nonadditive gene regulation in Arabidopsis allotetraploids. Genetics 2006, 172(1):507-517. 10.1534/genetics.105.047894, 1456178, 16172500.
-
(2006)
Genetics
, vol.172
, Issue.1
, pp. 507-517
-
-
Wang, J.1
Tian, L.2
Lee, H.S.3
Wei, N.E.4
Jiang, H.5
Watson, B.6
Madlung, A.7
Osborn, T.C.8
Doerge, R.W.9
Comai, L.10
-
41
-
-
4344642732
-
Stochastic and epigenetic changes of gene expression in Arabidopsis polyploids
-
10.1534/genetics.104.027896, 1471021, 15342533
-
Wang J, Tian L, Madlung A, Lee HS, Chen M, Lee JJ, Watson B, Kagochi T, Comai L, Chen ZJ. Stochastic and epigenetic changes of gene expression in Arabidopsis polyploids. Genetics 2004, 167(4):1961-1973. 10.1534/genetics.104.027896, 1471021, 15342533.
-
(2004)
Genetics
, vol.167
, Issue.4
, pp. 1961-1973
-
-
Wang, J.1
Tian, L.2
Madlung, A.3
Lee, H.S.4
Chen, M.5
Lee, J.J.6
Watson, B.7
Kagochi, T.8
Comai, L.9
Chen, Z.J.10
-
42
-
-
1542285163
-
A concerted DNA methylation/histone methylation switch regulates rRNA gene dosage control and nucleolar dominance
-
10.1016/S1097-2765(04)00064-4, 14992728
-
Lawrence RJ, Earley K, Pontes O, Silva M, Chen ZJ, Neves N, Viegas W, Pikaard CS. A concerted DNA methylation/histone methylation switch regulates rRNA gene dosage control and nucleolar dominance. Mol Cell 2004, 13(4):599-609. 10.1016/S1097-2765(04)00064-4, 14992728.
-
(2004)
Mol Cell
, vol.13
, Issue.4
, pp. 599-609
-
-
Lawrence, R.J.1
Earley, K.2
Pontes, O.3
Silva, M.4
Chen, Z.J.5
Neves, N.6
Viegas, W.7
Pikaard, C.S.8
-
43
-
-
0035810998
-
Protein-coding genes are epigenetically regulated in Arabidopsis polyploids
-
10.1073/pnas.121064698, 34425, 11371624
-
Lee HS, Chen ZJ. Protein-coding genes are epigenetically regulated in Arabidopsis polyploids. Proc Natl Acad Sci USA 2001, 98(12):6753-6758. 10.1073/pnas.121064698, 34425, 11371624.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, Issue.12
, pp. 6753-6758
-
-
Lee, H.S.1
Chen, Z.J.2
-
44
-
-
0033789617
-
Phenotypic instability and rapid gene silencing in newly formed Arabidopsis allotetraploids
-
10.1105/tpc.12.9.1551, 149069, 11006331
-
Comai L, Tyagi AP, Winter K, Holmes-Davis R, Reynolds SH, Stevens Y, Byers B. Phenotypic instability and rapid gene silencing in newly formed Arabidopsis allotetraploids. Plant Cell 2000, 12(9):1551-1568. 10.1105/tpc.12.9.1551, 149069, 11006331.
-
(2000)
Plant Cell
, vol.12
, Issue.9
, pp. 1551-1568
-
-
Comai, L.1
Tyagi, A.P.2
Winter, K.3
Holmes-Davis, R.4
Reynolds, S.H.5
Stevens, Y.6
Byers, B.7
-
45
-
-
0034879460
-
Polyploid formation in cotton is not accompanied by rapid genomic changes
-
10.1139/gen-44-3-321, 11444689
-
Liu B, Brubaker CL, Mergeai G, Cron RC, Wendel JF. Polyploid formation in cotton is not accompanied by rapid genomic changes. Genome 2001, 44:321-330. 10.1139/gen-44-3-321, 11444689.
-
(2001)
Genome
, vol.44
, pp. 321-330
-
-
Liu, B.1
Brubaker, C.L.2
Mergeai, G.3
Cron, R.C.4
Wendel, J.F.5
-
46
-
-
0031832808
-
Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton
-
Zhao X-P, Si Y, Hanson RE, Crane CF, J PH, Stelly DM, Wendel JF, Paterson AH. Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton. Genome Res 1998, 8:479-492.
-
(1998)
Genome Res
, vol.8
, pp. 479-492
-
-
Zhao, X.-.P.1
Si, Y.2
Hanson, R.E.3
Crane, C.F.4
J, P.H.5
Stelly, D.M.6
Wendel, J.F.7
Paterson, A.H.8
-
47
-
-
0030671532
-
Rapid elimination of low-copy DNA sequences in polyploid wheat: a possible mechanism for differentiation of homoeologous chromosomes
-
1208259, 9383078
-
Feldman M, Liu B, Segal G, Abbo S, Levy AA, Vega JM. Rapid elimination of low-copy DNA sequences in polyploid wheat: a possible mechanism for differentiation of homoeologous chromosomes. Genetics 1997, 147(3):1381-1387. 1208259, 9383078.
-
(1997)
Genetics
, vol.147
, Issue.3
, pp. 1381-1387
-
-
Feldman, M.1
Liu, B.2
Segal, G.3
Abbo, S.4
Levy, A.A.5
Vega, J.M.6
-
48
-
-
0034860131
-
Allopolyploidy-induced rapid genome evolution in the wheat (Aegilops-Triticum) group
-
10.1105/tpc.13.8.1735, 139130, 11487689
-
Ozkan H, Levy AA, Feldman M. Allopolyploidy-induced rapid genome evolution in the wheat (Aegilops-Triticum) group. Plant Cell 2001, 13(8):1735-1747. 10.1105/tpc.13.8.1735, 139130, 11487689.
-
(2001)
Plant Cell
, vol.13
, Issue.8
, pp. 1735-1747
-
-
Ozkan, H.1
Levy, A.A.2
Feldman, M.3
-
49
-
-
0034866855
-
Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat
-
10.1105/tpc.13.8.1749, 139131, 11487690
-
Shaked H, Kashkush K, Ozkan H, Feldman M, Levy AA. Sequence elimination and cytosine methylation are rapid and reproducible responses of the genome to wide hybridization and allopolyploidy in wheat. Plant Cell 2001, 13(8):1749-1759. 10.1105/tpc.13.8.1749, 139131, 11487690.
-
(2001)
Plant Cell
, vol.13
, Issue.8
, pp. 1749-1759
-
-
Shaked, H.1
Kashkush, K.2
Ozkan, H.3
Feldman, M.4
Levy, A.A.5
-
50
-
-
0037226595
-
Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat
-
10.1038/ng1063, 12483211
-
Kashkush K, Feldman M, Levy AA. Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat. Nat Genet 2003, 33(1):102-106. 10.1038/ng1063, 12483211.
-
(2003)
Nat Genet
, vol.33
, Issue.1
, pp. 102-106
-
-
Kashkush, K.1
Feldman, M.2
Levy, A.A.3
-
51
-
-
0029162810
-
Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution
-
10.1073/pnas.92.17.7719, 41217, 7644483
-
Song K, Lu P, Tang K, Osborn TC. Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution. Proc Natl Acad Sci USA 1995, 92(17):7719-7723. 10.1073/pnas.92.17.7719, 41217, 7644483.
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, Issue.17
, pp. 7719-7723
-
-
Song, K.1
Lu, P.2
Tang, K.3
Osborn, T.C.4
-
52
-
-
0346721803
-
Genome redundancy and plasticity within ancient and recent Brassica crop species
-
Lukens L, Quijada P, Udall J, Pires JC, E SM, Osborn TC. Genome redundancy and plasticity within ancient and recent Brassica crop species. Biol J Linn Soc Lond 2004, 82:665-674.
-
(2004)
Biol J Linn Soc Lond
, vol.82
, pp. 665-674
-
-
Lukens, L.1
Quijada, P.2
Udall, J.3
Pires, J.C.4
E, S.M.5
Osborn, T.C.6
-
53
-
-
33645832572
-
Patterns of sequence loss and cytosine methylation within a population of newly resynthesized Brassica napus allopolyploids
-
10.1104/pp.105.066308, 1326055, 16377753
-
Lukens LN, Pires JC, Leon E, Vogelzang R, Oslach L, Osborn T. Patterns of sequence loss and cytosine methylation within a population of newly resynthesized Brassica napus allopolyploids. Plant Physiol 2006, 140(1):336-348. 10.1104/pp.105.066308, 1326055, 16377753.
-
(2006)
Plant Physiol
, vol.140
, Issue.1
, pp. 336-348
-
-
Lukens, L.N.1
Pires, J.C.2
Leon, E.3
Vogelzang, R.4
Oslach, L.5
Osborn, T.6
-
54
-
-
0346091243
-
Flowering time divergence and genomic rearrangements in resynthesized Brassica polyploids (Brassicaceae)
-
Pires JC, Zhao JW, Schranz ME, Leon EJ, Quijada PA, Lukens LN, Osborn TC. Flowering time divergence and genomic rearrangements in resynthesized Brassica polyploids (Brassicaceae). Biol J Linn Soc Lond 2004, 82:675-688.
-
(2004)
Biol J Linn Soc Lond
, vol.82
, pp. 675-688
-
-
Pires, J.C.1
Zhao, J.W.2
Schranz, M.E.3
Leon, E.J.4
Quijada, P.A.5
Lukens, L.N.6
Osborn, T.C.7
-
55
-
-
37849034684
-
Genomic changes in resynthesized Brassica napus and their effect on gene expression and phenotype
-
10.1105/tpc.107.054346, 2174891, 18024568
-
Gaeta RT, Pires JC, Iniguez-Luy F, Leon E, Osborn TC. Genomic changes in resynthesized Brassica napus and their effect on gene expression and phenotype. Plant Cell 2007, 19(11):3403-3417. 10.1105/tpc.107.054346, 2174891, 18024568.
-
(2007)
Plant Cell
, vol.19
, Issue.11
, pp. 3403-3417
-
-
Gaeta, R.T.1
Pires, J.C.2
Iniguez-Luy, F.3
Leon, E.4
Osborn, T.C.5
-
56
-
-
11144224315
-
Chromosomal locus rearrangements are a rapid response to formation of the allotetraploid Arabidopsis suecica genome
-
Pontes O, Neves N, Silva M, Lewis MS, Madlung A, Comai L, Viegas W, Pikaard CS. Chromosomal locus rearrangements are a rapid response to formation of the allotetraploid Arabidopsis suecica genome. Proc Natl Acad Sci USA 2007, 101(52):18240-18245.
-
(2007)
Proc Natl Acad Sci USA
, vol.101
, Issue.52
, pp. 18240-18245
-
-
Pontes, O.1
Neves, N.2
Silva, M.3
Lewis, M.S.4
Madlung, A.5
Comai, L.6
Viegas, W.7
Pikaard, C.S.8
-
57
-
-
0031004628
-
Hybridization and evolution in Cardamine (Brassicaceae) at Urnerboden, Central Switzerland: biosystematic and molecular evidence
-
Urbanska KM, Hurka H, Landolt E, Neuffer B, Mummenhoff K. Hybridization and evolution in Cardamine (Brassicaceae) at Urnerboden, Central Switzerland: biosystematic and molecular evidence. Plant Syst Evol 1997, 204:233-256.
-
(1997)
Plant Syst Evol
, vol.204
, pp. 233-256
-
-
Urbanska, K.M.1
Hurka, H.2
Landolt, E.3
Neuffer, B.4
Mummenhoff, K.5
-
58
-
-
0008818265
-
A new British species of Senecio
-
Rosser EM. A new British species of Senecio. Watsonia 1955, 3:228-232.
-
(1955)
Watsonia
, vol.3
, pp. 228-232
-
-
Rosser, E.M.1
-
59
-
-
0027091182
-
Multiple origins and genetic diversity in the newly arisen allopolyploid species, Senecio cambrensis Rosser (Compositae)
-
Ashton PA, Abbott RJ. Multiple origins and genetic diversity in the newly arisen allopolyploid species, Senecio cambrensis Rosser (Compositae). Heredity 1992, 68:25-32.
-
(1992)
Heredity
, vol.68
, pp. 25-32
-
-
Ashton, P.A.1
Abbott, R.J.2
-
60
-
-
4344710831
-
Origins, establishment and evolution of new polyploid species: Senecio cambrensis and S. eboracensis in the British Isles
-
Abbott RJ, Lowe AJ. Origins, establishment and evolution of new polyploid species: Senecio cambrensis and S. eboracensis in the British Isles. Biol J Linn Soc Lond 2004, 82:467-474.
-
(2004)
Biol J Linn Soc Lond
, vol.82
, pp. 467-474
-
-
Abbott, R.J.1
Lowe, A.J.2
-
61
-
-
33847027601
-
Population decline despite high genetic diversity in the new allopolyploid species Senecio cambrensis (Asteraceae)
-
10.1111/j.1365-294X.2007.03169.x, 17305858
-
Abbott RJ, Ireland HE, Rogers HJ. Population decline despite high genetic diversity in the new allopolyploid species Senecio cambrensis (Asteraceae). Mol Ecol 2007, 16(5):1023-1033. 10.1111/j.1365-294X.2007.03169.x, 17305858.
-
(2007)
Mol Ecol
, vol.16
, Issue.5
, pp. 1023-1033
-
-
Abbott, R.J.1
Ireland, H.E.2
Rogers, H.J.3
-
62
-
-
33747161960
-
Transcriptome shock after interspecific hybridization in senecio is ameliorated by genome duplication
-
10.1016/j.cub.2006.06.071, 16920628
-
Hegarty MJ, Barker GL, Wilson ID, Abbott RJ, Edwards KJ, Hiscock SJ. Transcriptome shock after interspecific hybridization in senecio is ameliorated by genome duplication. Curr Biol 2006, 16(16):1652-1659. 10.1016/j.cub.2006.06.071, 16920628.
-
(2006)
Curr Biol
, vol.16
, Issue.16
, pp. 1652-1659
-
-
Hegarty, M.J.1
Barker, G.L.2
Wilson, I.D.3
Abbott, R.J.4
Edwards, K.J.5
Hiscock, S.J.6
-
63
-
-
43449099736
-
Genomic clues to the evolutionary success of polyploid plants
-
10.1016/j.cub.2008.03.043, 18492478
-
Hegarty MJ, Hiscock SJ. Genomic clues to the evolutionary success of polyploid plants. Curr Biol 2008, 18(10):R435-444. 10.1016/j.cub.2008.03.043, 18492478.
-
(2008)
Curr Biol
, vol.18
, Issue.10
-
-
Hegarty, M.J.1
Hiscock, S.J.2
-
64
-
-
4344669884
-
The origin of Spartina × townsendii
-
Huskins CL. The origin of Spartina × townsendii. Genetica 1930, 12:531-538.
-
(1930)
Genetica
, vol.12
, pp. 531-538
-
-
Huskins, C.L.1
-
65
-
-
16344367626
-
Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae)
-
10.1111/j.1365-294X.2005.02488.x, 15773943
-
Salmon A, Ainouche ML, Wendel JF. Genetic and epigenetic consequences of recent hybridization and polyploidy in Spartina (Poaceae). Mol Ecol 2005, 14(4):1163-1175. 10.1111/j.1365-294X.2005.02488.x, 15773943.
-
(2005)
Mol Ecol
, vol.14
, Issue.4
, pp. 1163-1175
-
-
Salmon, A.1
Ainouche, M.L.2
Wendel, J.F.3
-
66
-
-
0347388385
-
Hybridisation, polyploidy and speciation in Spartina Schreb. (Poaceae)
-
Ainouche ML, Baumel A, Salmon A, Yannic G. Hybridisation, polyploidy and speciation in Spartina Schreb. (Poaceae). New Phytol 2004, 161:165-172.
-
(2004)
New Phytol
, vol.161
, pp. 165-172
-
-
Ainouche, M.L.1
Baumel, A.2
Salmon, A.3
Yannic, G.4
-
67
-
-
3543129541
-
Evolution and current status of the salt marshes grass, Spartina anglica in the Solent
-
Amsterdam: Elsevier Science, Collins M, Ansell K
-
Raybould AF, Gray AJ, Hornby DD. Evolution and current status of the salt marshes grass, Spartina anglica in the Solent. Solent science - a review 2000, 299-302. Amsterdam: Elsevier Science, Collins M, Ansell K.
-
(2000)
Solent science - a review
, pp. 299-302
-
-
Raybould, A.F.1
Gray, A.J.2
Hornby, D.D.3
-
68
-
-
0004525544
-
Some observations on the ecology and taxonomy of Spartina neyrautii and Spartina alterniflora growing in France and Spain and comparison with Spartina townsendii and Spartina anglica
-
Hubbard JCE, Grimes BH, Marchant CJ. Some observations on the ecology and taxonomy of Spartina neyrautii and Spartina alterniflora growing in France and Spain and comparison with Spartina townsendii and Spartina anglica. Documents Phytosociologiques 1978, 2:273-282.
-
(1978)
Documents Phytosociologiques
, vol.2
, pp. 273-282
-
-
Hubbard, J.C.E.1
Grimes, B.H.2
Marchant, C.J.3
-
69
-
-
0000816013
-
Natural hybridization and amphiploidy in the genus Tragopogon
-
Ownbey M. Natural hybridization and amphiploidy in the genus Tragopogon. Am J Bot 1950, 37:407-486.
-
(1950)
Am J Bot
, vol.37
, pp. 407-486
-
-
Ownbey, M.1
-
70
-
-
0347352354
-
Recent and recurrent polyploidy in Tragopogon (Asteraceae): cytogentic, genomic and genetic comparisons
-
2136415, 18079994
-
Soltis DE, Soltis PS, Pires JC, Kovarik A, Tate JA, Mavrodiev E. Recent and recurrent polyploidy in Tragopogon (Asteraceae): cytogentic, genomic and genetic comparisons. Biol J Linn Soc Lond 2004, 82. 2136415, 18079994.
-
(2004)
Biol J Linn Soc Lond
, vol.82
-
-
Soltis, D.E.1
Soltis, P.S.2
Pires, J.C.3
Kovarik, A.4
Tate, J.A.5
Mavrodiev, E.6
-
71
-
-
15544385627
-
Rapid concerted evolution of nuclear ribosomal DNA in two Tragopogon allopolyploids of recent and recurrent origin
-
10.1534/genetics.104.032839, 1449095, 15654116
-
Kovarik A, Pires JC, Leitch AR, Lim KY, Sherwood AM, Matyášek R, Rocca J, Soltis DE, Soltis PS. Rapid concerted evolution of nuclear ribosomal DNA in two Tragopogon allopolyploids of recent and recurrent origin. Genetics 2005, 169(2):931-944. 10.1534/genetics.104.032839, 1449095, 15654116.
-
(2005)
Genetics
, vol.169
, Issue.2
, pp. 931-944
-
-
Kovarik, A.1
Pires, J.C.2
Leitch, A.R.3
Lim, K.Y.4
Sherwood, A.M.5
Matyášek, R.6
Rocca, J.7
Soltis, D.E.8
Soltis, P.S.9
-
72
-
-
34547803564
-
Concerted evolution of rDNA in recently formed Tragopogon allotetraploids is typically associated with an inverse correlation between gene copy number and expression
-
10.1534/genetics.107.072751, 1950650, 17603114
-
Matyášek R, Tate JA, Lim YK, Srubarova H, Koh J, Leitch AR, Soltis DE, Soltis PS, Kovarik A. Concerted evolution of rDNA in recently formed Tragopogon allotetraploids is typically associated with an inverse correlation between gene copy number and expression. Genetics 2007, 176(4):2509-2519. 10.1534/genetics.107.072751, 1950650, 17603114.
-
(2007)
Genetics
, vol.176
, Issue.4
, pp. 2509-2519
-
-
Matyášek, R.1
Tate, J.A.2
Lim, Y.K.3
Srubarova, H.4
Koh, J.5
Leitch, A.R.6
Soltis, D.E.7
Soltis, P.S.8
Kovarik, A.9
-
73
-
-
21244449997
-
Development of anonymous cDNA microarrays to study changes to the Senecio floral transcriptome during hybrid speciation
-
10.1111/j.1365-294x.2005.02608.x, 15969730
-
Hegarty MJ, Jones JM, Wilson ID, Barker GL, Coghill JA, Sanchez-Baracaldo P, Liu G, Buggs RJ, Abbott RJ, Edwards KJ, et al. Development of anonymous cDNA microarrays to study changes to the Senecio floral transcriptome during hybrid speciation. Mol Ecol 2005, 14(8):2493-2510. 10.1111/j.1365-294x.2005.02608.x, 15969730.
-
(2005)
Mol Ecol
, vol.14
, Issue.8
, pp. 2493-2510
-
-
Hegarty, M.J.1
Jones, J.M.2
Wilson, I.D.3
Barker, G.L.4
Coghill, J.A.5
Sanchez-Baracaldo, P.6
Liu, G.7
Buggs, R.J.8
Abbott, R.J.9
Edwards, K.J.10
-
74
-
-
34547107612
-
Phylogeny of Tragopogon porrifolius L. (Asteraceae), a European native with intercontinental disjuncts
-
Mavrodiev E, Soltis PS, Baldini RM, Gitzendanner MA, Soltis DE. Phylogeny of Tragopogon porrifolius L. (Asteraceae), a European native with intercontinental disjuncts. Int J Plant Sci 2007, 168:889-904.
-
(2007)
Int J Plant Sci
, vol.168
, pp. 889-904
-
-
Mavrodiev, E.1
Soltis, P.S.2
Baldini, R.M.3
Gitzendanner, M.A.4
Soltis, D.E.5
-
75
-
-
0003422308
-
Asteraceae: Cladistics and classification
-
Portland: Timber Press
-
Bremer K. Asteraceae: Cladistics and classification. 1994, Portland: Timber Press.
-
(1994)
-
-
Bremer, K.1
-
76
-
-
6344246373
-
Tragopogon
-
Moscow and Leningrad: Academy of the USSR, Shishkin BK
-
Borisova AG. Tragopogon. Flora of USSR 29 1964, 115-196. Moscow and Leningrad: Academy of the USSR, Shishkin BK.
-
(1964)
Flora of USSR 29
, pp. 115-196
-
-
Borisova, A.G.1
-
77
-
-
0342918979
-
The chromosomes of Tragopogon
-
Ownbey M, McCollum GD. The chromosomes of Tragopogon. Rodora 1954, 56:7-21.
-
(1954)
Rodora
, vol.56
, pp. 7-21
-
-
Ownbey, M.1
McCollum, G.D.2
-
78
-
-
0012247498
-
Cytoplasmic inheritance and reciprocal amphiploidy in Tragopogon
-
Ownbey M, McCollum GD. Cytoplasmic inheritance and reciprocal amphiploidy in Tragopogon. Am J Bot 1953, 40:788-796.
-
(1953)
Am J Bot
, vol.40
, pp. 788-796
-
-
Ownbey, M.1
McCollum, G.D.2
-
79
-
-
0004843395
-
Variation in Chromatographic patterns in the Tragopogon dubius-pratensis-porrifolius complex (Compositae)
-
Brehm BG, Ownbey M. Variation in Chromatographic patterns in the Tragopogon dubius-pratensis-porrifolius complex (Compositae). Am J Bot 1965, 52(8):811-818.
-
(1965)
Am J Bot
, vol.52
, Issue.8
, pp. 811-818
-
-
Brehm, B.G.1
Ownbey, M.2
-
80
-
-
0017035844
-
Genetic and biochemical consequences of polyploiy in Tragopogon
-
Roose ML, Gottlieb LD. Genetic and biochemical consequences of polyploiy in Tragopogon. Evolution 1976, 30:818-830.
-
(1976)
Evolution
, vol.30
, pp. 818-830
-
-
Roose, M.L.1
Gottlieb, L.D.2
-
81
-
-
0029082478
-
The dynamic nature of polyploid genomes
-
10.1073/pnas.92.18.8089, 41101, 7667249
-
Soltis DE, Soltis PS. The dynamic nature of polyploid genomes. Proc Natl Acad Sci USA 1995, 92(18):8089-8091. 10.1073/pnas.92.18.8089, 41101, 7667249.
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, Issue.18
, pp. 8089-8091
-
-
Soltis, D.E.1
Soltis, P.S.2
-
82
-
-
0001632482
-
Allopolyploid speciation in Tragopogon: Insights from chloroplast DNA
-
Soltis DE, Soltis PS. Allopolyploid speciation in Tragopogon: Insights from chloroplast DNA. Am J Bot 1989, 76:1119-1124.
-
(1989)
Am J Bot
, vol.76
, pp. 1119-1124
-
-
Soltis, D.E.1
Soltis, P.S.2
-
83
-
-
0031663297
-
Multiple independent formations of Tragopogon tetraploids (Asteraceae): evidence from RAPD markers
-
Cook LM, Soltis PS, Brunsfeld SJ, Soltis DE. Multiple independent formations of Tragopogon tetraploids (Asteraceae): evidence from RAPD markers. Mol Ecol 1998, 7:10.
-
(1998)
Mol Ecol
, vol.7
, pp. 10
-
-
Cook, L.M.1
Soltis, P.S.2
Brunsfeld, S.J.3
Soltis, D.E.4
-
84
-
-
0028872265
-
Genetic variation in Tragopogon species additional origin of the allotetraploids T. mirus and T. miscellus
-
Soltis PS, Plunkett GM, Novak SJ, Soltis DE. Genetic variation in Tragopogon species additional origin of the allotetraploids T. mirus and T. miscellus. Am J Bot 1995, 82:1329-1341.
-
(1995)
Am J Bot
, vol.82
, pp. 1329-1341
-
-
Soltis, P.S.1
Plunkett, G.M.2
Novak, S.J.3
Soltis, D.E.4
-
85
-
-
0034691216
-
The role of genetic and genomic attributes in the success of polyploids
-
10.1073/pnas.97.13.7051, 34383, 10860970
-
Soltis PS, Soltis DE. The role of genetic and genomic attributes in the success of polyploids. Proc Natl Acad Sci USA 2000, 97(13):7051-7057. 10.1073/pnas.97.13.7051, 34383, 10860970.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, Issue.13
, pp. 7051-7057
-
-
Soltis, P.S.1
Soltis, D.E.2
-
86
-
-
67651176366
-
On the road to diploidization? Homoeolog loss in independently formed populations of the allopolyploid Tragopogon miscellus (Asteraceae)
-
10.1186/1471-2229-9-80, 2708164, 19558696
-
Tate JA, Joshi P, Soltis KA, Soltis PS, Soltis DE. On the road to diploidization? Homoeolog loss in independently formed populations of the allopolyploid Tragopogon miscellus (Asteraceae). BMC Plant Biol 2009, 9:80. 10.1186/1471-2229-9-80, 2708164, 19558696.
-
(2009)
BMC Plant Biol
, vol.9
, pp. 80
-
-
Tate, J.A.1
Joshi, P.2
Soltis, K.A.3
Soltis, P.S.4
Soltis, D.E.5
-
87
-
-
68149099733
-
Gene loss and silencing in Tragopogon miscellus (Asteraceae): comparison of natural and synthetic allotetraploids
-
Buggs RJA, Doust AN, Tate JA, Koh J, Soltis K, Feltus FA, Paterson AH, Soltis PS, Soltis DE. Gene loss and silencing in Tragopogon miscellus (Asteraceae): comparison of natural and synthetic allotetraploids. Heredity 2009,
-
(2009)
Heredity
-
-
Buggs, R.J.A.1
Doust, A.N.2
Tate, J.A.3
Koh, J.4
Soltis, K.5
Feltus, F.A.6
Paterson, A.H.7
Soltis, P.S.8
Soltis, D.E.9
-
88
-
-
67549114985
-
Synthetic polyploids of Tragopogon miscellus and T. mirus (Asteraceae): 60 years after Ownbey's discovery
-
Tate JA, Symonds VV, Doust AN, Buggs RJA, Mavrodiev E, Majure LC, Soltis PS, Soltis DE. Synthetic polyploids of Tragopogon miscellus and T. mirus (Asteraceae): 60 years after Ownbey's discovery. Am J Bot 2009, 96:979-988.
-
(2009)
Am J Bot
, vol.96
, pp. 979-988
-
-
Tate, J.A.1
Symonds, V.V.2
Doust, A.N.3
Buggs, R.J.A.4
Mavrodiev, E.5
Majure, L.C.6
Soltis, P.S.7
Soltis, D.E.8
-
89
-
-
24944560428
-
Gene expression changes in Ephestia kuehniella caterpillars after parasitization by the endoparasitic wasp Venturia canescens analyzed through cDNA-AFLPs
-
10.1016/j.jinsphys.2005.04.007, 15949813
-
Reineke A, Lobmann S. Gene expression changes in Ephestia kuehniella caterpillars after parasitization by the endoparasitic wasp Venturia canescens analyzed through cDNA-AFLPs. J Insect Physiol 2005, 51(8):923-932. 10.1016/j.jinsphys.2005.04.007, 15949813.
-
(2005)
J Insect Physiol
, vol.51
, Issue.8
, pp. 923-932
-
-
Reineke, A.1
Lobmann, S.2
-
90
-
-
35748929078
-
Analysis of differential gene expression in the generalist entomopathogenic fungus Beauveria bassiana (Bals.) Vuillemin grown on different insect cuticular extracts and synthetic medium through cDNA-AFLPs
-
10.1016/j.fgb.2007.07.002, 17723310
-
Pathan AA, Uma Devi K, Vogel H, Reineke A. Analysis of differential gene expression in the generalist entomopathogenic fungus Beauveria bassiana (Bals.) Vuillemin grown on different insect cuticular extracts and synthetic medium through cDNA-AFLPs. Fungal Genet Biol 2007, 44(12):1231-1241. 10.1016/j.fgb.2007.07.002, 17723310.
-
(2007)
Fungal Genet Biol
, vol.44
, Issue.12
, pp. 1231-1241
-
-
Pathan, A.A.1
Uma Devi, K.2
Vogel, H.3
Reineke, A.4
-
91
-
-
19944378073
-
Methods for genome-wide analysis of gene expression changes in polyploids
-
full_text, 1986650, 15865985
-
Wang J, Lee JJ, Tian L, Lee HS, Chen M, Rao S, Wei EN, Doerge RW, Comai L, Chen ZJ. Methods for genome-wide analysis of gene expression changes in polyploids. Methods Enzymol 2005, 395:570-596. full_text, 1986650, 15865985.
-
(2005)
Methods Enzymol
, vol.395
, pp. 570-596
-
-
Wang, J.1
Lee, J.J.2
Tian, L.3
Lee, H.S.4
Chen, M.5
Rao, S.6
Wei, E.N.7
Doerge, R.W.8
Comai, L.9
Chen, Z.J.10
-
92
-
-
0026145634
-
Use of a genomic clone for ribosomal RNA from Brassica oleracea in RFLP analysis of Brassica species
-
10.1007/BF00023432, 1678285
-
Bennett RI, Smith AG. Use of a genomic clone for ribosomal RNA from Brassica oleracea in RFLP analysis of Brassica species. Plant Mol Biol 1991, 16:685-688. 10.1007/BF00023432, 1678285.
-
(1991)
Plant Mol Biol
, vol.16
, pp. 685-688
-
-
Bennett, R.I.1
Smith, A.G.2
-
93
-
-
0141991410
-
The origins of Arabidopsis suecica as indicated by nuclear rDNA sequences
-
O'Kane SL, Schaal BA, Al-Shehbaz IA. The origins of Arabidopsis suecica as indicated by nuclear rDNA sequences. Syst Bot 1996, 21:559-566.
-
(1996)
Syst Bot
, vol.21
, pp. 559-566
-
-
O'Kane, S.L.1
Schaal, B.A.2
Al-Shehbaz, I.A.3
-
94
-
-
0041766326
-
Rapid evolution of parental rDNA in a synthetic tobacco allotetraploid line
-
Skalicka K, Lim KY, Matyášek R, Koukalova B, Leitch A, Kovaík A. Rapid evolution of parental rDNA in a synthetic tobacco allotetraploid line. Am J Bot 2003, 90:988-996.
-
(2003)
Am J Bot
, vol.90
, pp. 988-996
-
-
Skalicka, K.1
Lim, K.Y.2
Matyášek, R.3
Koukalova, B.4
Leitch, A.5
Kovaík, A.6
-
95
-
-
15944409560
-
Preferential elimination of repeated DNA sequences from the paternal, Nicotiana tomentosiformis genome donor of a synthetic, allotetraploid tobacco
-
10.1111/j.1469-8137.2004.01297.x, 15760371
-
Skalicka K, Lim KY, Matyášek R, Matzke M, Leitch AR, Kovarik A. Preferential elimination of repeated DNA sequences from the paternal, Nicotiana tomentosiformis genome donor of a synthetic, allotetraploid tobacco. New Phytol 2005, 166(1):291-303. 10.1111/j.1469-8137.2004.01297.x, 15760371.
-
(2005)
New Phytol
, vol.166
, Issue.1
, pp. 291-303
-
-
Skalicka, K.1
Lim, K.Y.2
Matyášek, R.3
Matzke, M.4
Leitch, A.R.5
Kovarik, A.6
-
96
-
-
0022354296
-
Rapid amplification and fixation of new restriction sites in the ribosomal DNA repeats in the derivatives of a cross between maize and Tripsacum dactyloides
-
Lin L-S, Ho TD, Harlan JR. Rapid amplification and fixation of new restriction sites in the ribosomal DNA repeats in the derivatives of a cross between maize and Tripsacum dactyloides. Devel Genetics 1985, 6:101-112.
-
(1985)
Devel Genetics
, vol.6
, pp. 101-112
-
-
Lin, L.-.S.1
Ho, T.D.2
Harlan, J.R.3
-
97
-
-
0030447787
-
The fate of ribosomal genes in three interspecific somatic hybrids of Medicago sativa: three different outcomes including the rapid amplification of new spacer-length variants
-
Cluster PD, Calderini O, Pupilli F, Crea F, Fea D. The fate of ribosomal genes in three interspecific somatic hybrids of Medicago sativa: three different outcomes including the rapid amplification of new spacer-length variants. Theor Appl Genet 1996, 93:801-808.
-
(1996)
Theor Appl Genet
, vol.93
, pp. 801-808
-
-
Cluster, P.D.1
Calderini, O.2
Pupilli, F.3
Crea, F.4
Fea, D.5
-
98
-
-
33744744079
-
A genetic appraisal of a new synthetic Nicotiana tabacum (Solanaceae) and the Kostoff synthetic tobacco
-
Lim KY, Souckova-Skalicka K, Sarasan V, Clarkson JJ, CMWe, et al. A genetic appraisal of a new synthetic Nicotiana tabacum (Solanaceae) and the Kostoff synthetic tobacco. Am J Bot 2006, 93:875-883.
-
(2006)
Am J Bot
, vol.93
, pp. 875-883
-
-
Lim, K.Y.1
Souckova-Skalicka, K.2
Sarasan, V.3
Clarkson, J.J.4
CMWe5
-
99
-
-
11144224315
-
Chromosomal locus rearrangements are a rapid response to formation of the allotetraploid Arabidopsis suecica genome
-
10.1073/pnas.0407258102, 539792, 15604143
-
Pontes O, Neves N, Silva M, Lewis MS, Madlung A, Comai L, Viegas W, Pikaard CS. Chromosomal locus rearrangements are a rapid response to formation of the allotetraploid Arabidopsis suecica genome. Proc Natl Acad Sci USA 2004, 101(52):18240-18245. 10.1073/pnas.0407258102, 539792, 15604143.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, Issue.52
, pp. 18240-18245
-
-
Pontes, O.1
Neves, N.2
Silva, M.3
Lewis, M.S.4
Madlung, A.5
Comai, L.6
Viegas, W.7
Pikaard, C.S.8
-
100
-
-
0346091284
-
Concerted evolution of 18-5.8-26S rDNA repeats in Nicotiana allotetraploids
-
Kovarýk A, Matyášek R, Lim KY, Skalicka K, Koukalova B, Knapp S, Chase M, Leitch AR. Concerted evolution of 18-5.8-26S rDNA repeats in Nicotiana allotetraploids. Biol J Linn Soc Lond 2004, 82:615-625.
-
(2004)
Biol J Linn Soc Lond
, vol.82
, pp. 615-625
-
-
Kovarýk, A.1
Matyášek, R.2
Lim, K.Y.3
Skalicka, K.4
Koukalova, B.5
Knapp, S.6
Chase, M.7
Leitch, A.R.8
-
101
-
-
48249117459
-
Genomic origin and organization of the allopolyploid Primula egaliksensis investigated by in situ hybridization
-
Guggisberg A, Baroux C, Grossniklaus U, Conti E. Genomic origin and organization of the allopolyploid Primula egaliksensis investigated by in situ hybridization. Ann Bot (Lond) 2008, 101(7):919-927.
-
(2008)
Ann Bot (Lond)
, vol.101
, Issue.7
, pp. 919-927
-
-
Guggisberg, A.1
Baroux, C.2
Grossniklaus, U.3
Conti, E.4
-
102
-
-
54449101933
-
Rapid chromosome evolution in recently formed polyploids in Tragopogon (Asteraceae)
-
10.1371/journal.pone.0003353, 18843372, 2556386
-
Lim KY, Soltis DE, Soltis PS, Tate J, Matyasek R, Srubarova H, Kovarik A, Pires JC, Xiong Z, Leitch AR. Rapid chromosome evolution in recently formed polyploids in Tragopogon (Asteraceae). PLoS ONE 2008, 3:e3353. 10.1371/journal.pone.0003353, 18843372, 2556386.
-
(2008)
PLoS ONE
, vol.3
-
-
Lim, K.Y.1
Soltis, D.E.2
Soltis, P.S.3
Tate, J.4
Matyasek, R.5
Srubarova, H.6
Kovarik, A.7
Pires, J.C.8
Xiong, Z.9
Leitch, A.R.10
-
103
-
-
0031008613
-
Isolation and characterization of chromosome-specific DNA sequences from a chromosome arm genomic library of common wheat
-
Liu B, Segal G, Vega JM, Feldman M, S A. Isolation and characterization of chromosome-specific DNA sequences from a chromosome arm genomic library of common wheat. Plant J 1997, 11:959-965.
-
(1997)
Plant J
, vol.11
, pp. 959-965
-
-
Liu, B.1
Segal, G.2
Vega, J.M.3
Feldman, M.4
S, A.5
-
104
-
-
0031872639
-
Rapid genomic changes in newly synthesized amphiploids of Triticum and Aegilops. I. Changes in low-copy noncoding DNA sequences
-
Liu B, Vega JM, Segal G, Abbo S, Rodova H, Feldman M. Rapid genomic changes in newly synthesized amphiploids of Triticum and Aegilops. I. Changes in low-copy noncoding DNA sequences. Genome 1998, 41:272-277.
-
(1998)
Genome
, vol.41
, pp. 272-277
-
-
Liu, B.1
Vega, J.M.2
Segal, G.3
Abbo, S.4
Rodova, H.5
Feldman, M.6
-
105
-
-
0347352344
-
Genetic and epigenetic reprogramming of the wheat genome upon allopolyploidization
-
Levy A, Feldman M. Genetic and epigenetic reprogramming of the wheat genome upon allopolyploidization. Biol J Linn Soc Lond 2004, 82:607-613.
-
(2004)
Biol J Linn Soc Lond
, vol.82
, pp. 607-613
-
-
Levy, A.1
Feldman, M.2
-
106
-
-
54449101933
-
Rapid chromosome evolution in recently formed polyploids in Tragopogon (Asteraceae)
-
10.1371/journal.pone.0003353, 2556386, 18843372
-
Lim KY, Soltis DE, Soltis PS, Tate J, Matyášek R, Srubarova H, Kovarik A, Pires JC, Xiong Z, Leitch AR. Rapid chromosome evolution in recently formed polyploids in Tragopogon (Asteraceae). PLoS ONE 2008, 3:e3353. 10.1371/journal.pone.0003353, 2556386, 18843372.
-
(2008)
PLoS ONE
, vol.3
-
-
Lim, K.Y.1
Soltis, D.E.2
Soltis, P.S.3
Tate, J.4
Matyášek, R.5
Srubarova, H.6
Kovarik, A.7
Pires, J.C.8
Xiong, Z.9
Leitch, A.R.10
-
107
-
-
34247377425
-
GAPDH, a novel regulator of the pro-apoptotic mitochondrial membrane permeabilization
-
10.1038/sj.onc.1210074, 17072346
-
Tarze A, Deniaud A, Le Bras M, Maillier E, Molle D, Larochette N, Zamzami N, Jan G, Kroemer G, Brenner C. GAPDH, a novel regulator of the pro-apoptotic mitochondrial membrane permeabilization. Oncogene 2007, 26(18):2606-2620. 10.1038/sj.onc.1210074, 17072346.
-
(2007)
Oncogene
, vol.26
, Issue.18
, pp. 2606-2620
-
-
Tarze, A.1
Deniaud, A.2
Le Bras, M.3
Maillier, E.4
Molle, D.5
Larochette, N.6
Zamzami, N.7
Jan, G.8
Kroemer, G.9
Brenner, C.10
-
108
-
-
0035984262
-
Remodeling of DNA methylation and phenotypic and transcriptional changes in synthetic Arabidopsis allotetraploids
-
10.1104/pp.003095, 161697, 12068115
-
Madlung A, Masuelli RW, Watson B, Reynolds SH, Davison J, Comai L. Remodeling of DNA methylation and phenotypic and transcriptional changes in synthetic Arabidopsis allotetraploids. Plant Physiol 2002, 129(2):733-746. 10.1104/pp.003095, 161697, 12068115.
-
(2002)
Plant Physiol
, vol.129
, Issue.2
, pp. 733-746
-
-
Madlung, A.1
Masuelli, R.W.2
Watson, B.3
Reynolds, S.H.4
Davison, J.5
Comai, L.6
-
109
-
-
34249790257
-
RRNA gene silencing and nucleolar dominance: insights into a chromosome-scale epigenetic on/off switch
-
2000449, 17439825
-
Preuss S, Pikaard CS. rRNA gene silencing and nucleolar dominance: insights into a chromosome-scale epigenetic on/off switch. Biochim Biophys Acta 2007, 1769(5-6):383-392. 2000449, 17439825.
-
(2007)
Biochim Biophys Acta
, vol.1769
, Issue.5-6
, pp. 383-392
-
-
Preuss, S.1
Pikaard, C.S.2
-
110
-
-
34248328910
-
Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids
-
10.1146/annurev.arplant.58.032806.103835, 1949485, 17280525
-
Chen ZJ. Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids. Annu Rev Plant Biol 2007, 58:377-406. 10.1146/annurev.arplant.58.032806.103835, 1949485, 17280525.
-
(2007)
Annu Rev Plant Biol
, vol.58
, pp. 377-406
-
-
Chen, Z.J.1
-
111
-
-
0030138199
-
Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: analysis of gene expression during potato tuber development
-
10.1046/j.1365-313X.1996.9050745.x, 8653120
-
Bachem CW, Hoeven RS, de Bruijn SM, Vreugdenhil D, Zabeau M, Visser RG. Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: analysis of gene expression during potato tuber development. Plant J 1996, 9(5):745-753. 10.1046/j.1365-313X.1996.9050745.x, 8653120.
-
(1996)
Plant J
, vol.9
, Issue.5
, pp. 745-753
-
-
Bachem, C.W.1
Hoeven, R.S.2
de Bruijn, S.M.3
Vreugdenhil, D.4
Zabeau, M.5
Visser, R.G.6
-
112
-
-
11244349782
-
Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid
-
10.1534/genetics.104.033522, 1448729, 15371349
-
Adams KL, Percifield R, Wendel JF. Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid. Genetics 2004, 168(4):2217-2226. 10.1534/genetics.104.033522, 1448729, 15371349.
-
(2004)
Genetics
, vol.168
, Issue.4
, pp. 2217-2226
-
-
Adams, K.L.1
Percifield, R.2
Wendel, J.F.3
-
113
-
-
0033824517
-
Genetic and epigenetic interactions in allopolyploid plants
-
10.1023/A:1006480722854, 10999418
-
Comai L. Genetic and epigenetic interactions in allopolyploid plants. Plant Mol Biol 2000, 43(2-3):387-399. 10.1023/A:1006480722854, 10999418.
-
(2000)
Plant Mol Biol
, vol.43
, Issue.2-3
, pp. 387-399
-
-
Comai, L.1
-
114
-
-
0037560724
-
Allopolyploidy alters gene expression in the highly stable hexaploid wheat
-
10.1023/A:1023965400532, 12856945
-
He P, Friebe BR, Gill BS, Zhou J-M. Allopolyploidy alters gene expression in the highly stable hexaploid wheat. Plant Mol Biol 2003, 52:401-414. 10.1023/A:1023965400532, 12856945.
-
(2003)
Plant Mol Biol
, vol.52
, pp. 401-414
-
-
He, P.1
Friebe, B.R.2
Gill, B.S.3
Zhou, J.-.M.4
-
115
-
-
0027650566
-
A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers
-
10.1046/j.1365-313X.1993.04020403.x, 8106085
-
Konieczny A, Ausubel FM. A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers. Plant J 1993, 4(2):403-410. 10.1046/j.1365-313X.1993.04020403.x, 8106085.
-
(1993)
Plant J
, vol.4
, Issue.2
, pp. 403-410
-
-
Konieczny, A.1
Ausubel, F.M.2
-
116
-
-
15944381065
-
Phylogeny and diversification of B-function MADS-box genes in angiosperms: evolutionary and functional implications of a 260-million-year-old duplication
-
Kim S, Yoo M, Albert VA, Farris JS, Soltis PS, Soltis DE. Phylogeny and diversification of B-function MADS-box genes in angiosperms: evolutionary and functional implications of a 260-million-year-old duplication. Am J Bot 2004, 91:2102-2118.
-
(2004)
Am J Bot
, vol.91
, pp. 2102-2118
-
-
Kim, S.1
Yoo, M.2
Albert, V.A.3
Farris, J.S.4
Soltis, P.S.5
Soltis, D.E.6
-
117
-
-
0002594984
-
A rapid DNA isolation procedure for small quantities of fresh leaf tissue
-
Doyle JJ, Doyle JL. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 1987, 19:11-15.
-
(1987)
Phytochem Bull
, vol.19
, pp. 11-15
-
-
Doyle, J.J.1
Doyle, J.L.2
-
118
-
-
0004136246
-
Molecular cloning: a laboratory manual
-
Cold Spring Harbor: Cold Spring Harbor Laboratory Press
-
Sambrook J, Russell DW. Molecular cloning: a laboratory manual. 2001, Cold Spring Harbor: Cold Spring Harbor Laboratory Press.
-
(2001)
-
-
Sambrook, J.1
Russell, D.W.2
|