Roles of the transcriptional regulation mediated by the nitrate-responsive cis-element in higher plants

Biochemical and Biophysical Research Communications

Volumn 411, Issue 4, 2011, Pages 708-713

  Konishi, Mineko ^a,b   Yanagisawa, Shuichi ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b JAPAN SOCIETY FOR THE PROMOTION OF SCIENCE   (Japan)

Author keywords

Diurnal expression; Higher plant; Nitrate signal; Nitrate inducible gene expression; Nitrate responsive cis element; Nitrite reductase

Indexed keywords

CIS ACTING ELEMENT; CYCLOHEXIMIDE; NITRATE; NITRITE REDUCTASE; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR GUS; UNCLASSIFIED DRUG;

ARABIDOPSIS; ARTICLE; CIRCADIAN RHYTHM; CONTROLLED STUDY; COTYLEDON; DIURNAL SPECIES; DNA STRUCTURE; GENE EXPRESSION; GENE SEQUENCE; HIGHER PLANT; MEDIATOR; NITRATE RESPONSIVE ELEMENT; NONHUMAN; OSCILLATION; PRIORITY JOURNAL; PROTEIN ANALYSIS; REPORTER GENE; TRANSCRIPTION REGULATION; TRANSGENICS;

ARABIDOPSIS; BASE SEQUENCE; CIRCADIAN RHYTHM; GENE EXPRESSION REGULATION, PLANT; NITRATE REDUCTASE; NITRATES; NITRITE REDUCTASES; PLANTS; PLANTS, GENETICALLY MODIFIED; RESPONSE ELEMENTS; TRANSCRIPTION, GENETIC;

ARABIDOPSIS; EMBRYOPHYTA;

EID: 80051566168     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2011.07.008     Document Type: Article

References (34)

1. Crawford N.M., Forde B.G. Molecular and developmental biology of inorganic nitrogen nutrition. The Arabidopsis Book 2002, American Society of Plant Biologists, Rockville, MD. C.R. Somerville, E.M. Meyerowitz (Eds.).
2. Stitt M. Nitrate regulation of metabolism and growth. Curr. Opin. Plant Biol. 1999, 2:178-186.
3. Gojon A., Nacry P., Davidian J.C. Root uptake regulation: a central process for NPS homeostasis in plants. Curr. Opin. Plant Biol. 2009, 12:328-338.
4. Pouteau S., Cherel I., Vaucheret H., Caboche M. Nitrate reductase mRNA regulation in Nicotiana plumbaginifolia nitrate reductase-deficient mutants. Plant Cell 1989, 1:1111-1120.
5. Scheible W.R., Gonzalez-Fontes A., Lauerer M., Muller-Rober B., Caboche M., Stitt M. Nitrate acts as a signal to induce organic acid metabolism and repress starch metabolism in tobacco. Plant Cell 1997, 9:783-798.
6. Wang R., Tischner R., Gutierrez R.A., Hoffman M., Xing X., Chen M., Coruzzi G., Crawford N.M. Genomic analysis of the nitrate response using a nitrate reductase-null mutant of Arabidopsis. Plant Physiol. 2004, 136:2512-2522.
7. Wang R., Okamoto M., Xing X., Crawford N.M. Microarray analysis of the nitrate response in Arabidopsis roots and shoots reveals over 1, 000 rapidly responding genes and new linkages to glucose, trehalose-6-phosphate, iron, and sulfate metabolism. Plant Physiol. 2003, 132:556-567.
8. Scheible W.R., Morcuende R., Czechowski T., et al. Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen. Plant Physiol. 2004, 136:2483-2499.
9. Gowri G., Kenis J.D., Ingemarsson B., Redinbaugh M.G., Campbell W.H. Nitrate reductase transcript is expressed in the primary response of maize to environmental nitrate. Plant Mol. Biol. 1992, 18:55-64.
10. Price J., Laxmi A., St Martin S.K., Jang J.C. Global transcription profiling reveals multiple sugar signal transduction mechanisms in Arabidopsis. Plant Cell 2004, 16:2128-2150.
11. Sakakibara H., Takei K., Sugiyama T. Isolation and characterization of a cDNA that encodes maize uroporphyrinogen III methyltransferase. An enzyme involved in the synthesis of siroheme, which is prosthetic group of nitrite reductase. Plant J. 1996, 10:883-892.
12. Back E., Burkhart W., Moyer M., Privalle L., Rothstein S. Isolation of cDNA clones coding for spinach nitrite reductase: complete sequence and nitrate induction. Mol. Gen. Genet. 1988, 212:20-26.
13. Sander L., Jensen P.E., Back L.F., Stummann B.M., Henningsen K.W. Structure and expression of a nitrite reductase gene from bean (Phaseolus vulgaris) and promoter analysis in transgenic tobacco. Plant Mol. Biol. 1995, 27:165-177.
14. Kronenberger J., Lepingle A., Caboche M., Vaucheret H. Cloning and expression of distinct nitrite reductases in tobacco leaves and roots. Mol. Gen. Genet. 1993, 236:203-208.
15. Lahners K., Kramer V., Back E., Privalle L., Rothstein S. Molecular cloning of complementary DNA encoding maize nitrite reductase: molecular analysis and nitrate induction. Plant Physiol. 1988, 88:741-746.
16. Nishimura A., Ashikari M., Lin S., Takashi T., Angeles E.R., Yamamoto T., Matsuoka M. Isolation of a rice regeneration quantitative trait loci gene and its application to transformation systems. Proc. Natl. Acad. Sci. USA 2005, 102:11940-11944.
17. Neininger A., Back E., Bichler J., Schneiderbauer A., Mohr H. Deletion analysis of a nitrite-reductase promoter from spinach in transgenic tobacco. Planta 1994, 194:186-192.
18. Rastogi R., Bate N.J., Sivasankar S., Rothstein S.J. Footprinting of the spinach nitrite reductase gene promoter reveals the preservation of nitrate regulatory elements between fungi and higher plants. Plant Mol. Biol. 1997, 34:465-476.
19. Sivasankar S., Rastogi R., Jackman L., Oaks A., Rothstein S. Analysis of cis-acting DNA elements mediating induction and repression of the spinach nitrite reductase gene. Planta 1998, 206:66-71.
20. Warning H.O., Hactel W. Functional analysis of a nitrite reductase promoter from birch in transgenic tobacco. Plant Sci. 2000, 155:141-151.
21. Konishi M., Yanagisawa S. Identification of a nitrate-responsive cis-element in the Arabidopsis NIR1 promoter defines the presence of multiple cis-regulatory elements for nitrogen response. Plant J. 2010, 63:269-282.
22. Konishi M., Yanagisawa S. Sequential activation of two Dof transcription factor gene promoters during vascular development in Arabidopsis thaliana. Plant Physiol. Biochem. 2007, 45:623-629.
23. Abel S., Nguyen M.D., Theologis A. The PS-IAA4/5-like family of early auxin-inducible mRNAs in Arabidopsis thaliana. J. Mol. Biol. 1995, 251:533-549.
24. Becana M., Sprent J.I. Nitrogen fixation and nitrate reduction in the root nodules of legumes. Physiol. Plant 1987, 70:757-765.
25. Vincentz M., Moureaux T., Leydecker M.T., Vaucheret H., Caboche M. Regulation of nitrate and nitrite reductase expression in Nicotiana plumbaginifolia leaves by nitrogen and carbon metabolites. Plant J. 1993, 3:315-324.
26. Galangau F., Daniel-Vedele F., Moureaux T., Dorbe M.F., Leydecker M.T., Caboche M. Expression of leaf nitrate reductase genes from tomato and tobacco in relation to light-dark regimes and nitrate supply. Plant Physiol. 1988, 88:383-388.
27. Cheng C.L., Acedo G.N., Dewdney J., Goodman H.M., Conkling M.A. Differential expression of the two Arabidopsis nitrate reductase genes. Plant Physiol. 1991, 96:275-279.
28. Scheible W.R., Gonzalez-Fontes A., Morcuende R., et al. Tobacco mutants with a decreased number of functional nia genes compensate by modifying the diurnal regulation of transcription, post-translational modification and turnover of nitrate reductase. Planta 1997, 203:304-319.
29. Vaucheret H., Marion-Poll A., Meyer C., Faure J.D., Marin E., Caboche M. Interest in and limits to the utilization of reporter genes for the analysis of transcriptional regulation of nitrate reductase. Mol. Gen. Genet. 1992, 235:259-268.
30. Faure J.D., Vincentz M., Kronenberger J., Caboche M. Co-regulated expression of nitrate and nitrite reductases. Plant J. 1991, 1:107-113.
31. Matt P., Geiger M., Walch-Liu P., Engels C., Krapp A., Stitt M. The immediate cause of the diurnal changes of nitrogen metabolism in leaves of nitrate-replete tobacco: a major imbalance between the rate of nitrate reducton and the rate of nitrate uptake and ammonium metabolism during the first part of the light period. Plant Cell Environ. 2001, 24:177-190.
32. Harmer S.L. The circadian system in higher plants. Ann. Rev. Plant Biol. 2009, 60:357-377.
33. Lillo C., Meyer C., Ruoff P. The nitrate reductase circadian system. The central clock dogma contra multiple oscillatory feedback loops. Plant Physiol. 2001, 125:1554-1557.
34. Crooks G.E., Hon G., Chandonia J.M., Brenner S.E. WebLogo: a sequence logo generator. Genome. Res. 2004, 14:1188-1190.