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Volumn 25, Issue 6, 2011, Pages 583-597

Quantum mechanics study of the hydroxyethylamines-BACE-1 active site interaction energies

Author keywords

Alzheimer's disease; BACE 1; Counterpoise; DFT; Hydroxyethylamine inhibitors; Interaction energy; X3LYP

Indexed keywords

DENSITY FUNCTIONAL THEORY; DESIGN FOR TESTABILITY; GLYCOPROTEINS; HYDROPHOBICITY; NEURODEGENERATIVE DISEASES; PEPTIDES; QUANTUM THEORY;

EID: 80051550298     PISSN: 0920654X     EISSN: 15734951     Source Type: Journal    
DOI: 10.1007/s10822-011-9443-z     Document Type: Article
Times cited : (18)

References (50)
  • 1
    • 0037038816 scopus 로고    scopus 로고
    • β-secretase (BACE) as a drug target for Alzheimer's disease
    • DOI 10.1016/S0169-409X(02)00157-6, PII S0169409X02001576
    • R Vassar 2002 Adv Drug Deliv Rev 54 1589 1602 10.1016/S0169-409X(02) 00157-6 1:CAS:528:DC%2BD38XovFemtL8%3D (Pubitemid 35346833)
    • (2002) Advanced Drug Delivery Reviews , vol.54 , Issue.12 , pp. 1589-1602
    • Vassar, R.1
  • 3
    • 0035693924 scopus 로고    scopus 로고
    • Inflammation, autotoxicity and Alzheimer disease
    • DOI 10.1016/S0197-4580(01)00289-5, PII S0197458001002895
    • PL McGeer EG McGeer 2001 Neurobiol Aging 22 799 809 10.1016/S0197- 4580(01)00289-5 1:CAS:528:DC%2BD3MXptFylur8%3D (Pubitemid 34066546)
    • (2001) Neurobiology of Aging , vol.22 , Issue.6 , pp. 799-809
    • McGeer, P.L.1    McGeer, E.G.2
  • 4
    • 46749092486 scopus 로고    scopus 로고
    • β-Secretase as a Therapeutic Target for Alzheimer's Disease
    • DOI 10.1016/j.nurt.2008.05.007, PII S1933721308000974
    • AK Ghosh S Gemma J Tang 2008 Neurotherapeutics 5 399 408 10.1016/j.nurt.2008.05.007 1:CAS:528:DC%2BD1cXhtVOgtL3F (Pubitemid 351952491)
    • (2008) Neurotherapeutics , vol.5 , Issue.3 , pp. 399-408
    • Ghosh, A.K.1    Gemma, S.2    Tang, J.3
  • 5
    • 2942534993 scopus 로고    scopus 로고
    • HIV protease inhibition: Limited recent progress and advances in understanding current pitfalls
    • DOI 10.2174/1568026043388529
    • F Rodriguez-Barrios F Gago 2004 Curr Top Med Chem 4 991 1007 10.2174/1568026043388529 1:CAS:528:DC%2BD2cXjslGhtb8%3D (Pubitemid 38854851)
    • (2004) Current Topics in Medicinal Chemistry , vol.4 , Issue.9 , pp. 991-1007
    • Rodriguez-Barrios, F.1    Gago, F.2
  • 13
    • 0034881503 scopus 로고    scopus 로고
    • Transport characteristics of peptides and peptidomimetics: II. Hydroxyethylamine bioisostere-containing peptidomimetics as substrates for the oligopeptide transporter and P-glycoprotein in the intestinal mucosa
    • DOI 10.1034/j.1399-3011.2001.00830.x
    • J Gao SL Winslow D Vander Velde J Aubé RT Borchardt 2001 J Pept Res 57 361 373 10.1034/j.1399-3011.2001.00830.x 1:CAS:528:DC%2BD3MXjtlGisrk%3D (Pubitemid 32769041)
    • (2001) Journal of Peptide Research , vol.57 , Issue.5 , pp. 361-373
    • Gao, J.1    Winslow, S.L.2    Vander Velde, D.3    Borchardt, R.T.4    Aube, J.5
  • 15
    • 77956875483 scopus 로고    scopus 로고
    • 10.1007/s10822-010-9375-z 1:CAS:528:DC%2BC3cXhtFKlsLrM
    • LB Salum NF Valadares 2010 J Comput Aided Mol Des 24 803 817 10.1007/s10822-010-9375-z 1:CAS:528:DC%2BC3cXhtFKlsLrM
    • (2010) J Comput Aided Mol des , vol.24 , pp. 803-817
    • Salum, L.B.1    Valadares, N.F.2
  • 18
    • 77149154078 scopus 로고    scopus 로고
    • 10.1007/s11030-009-9139-7 1:CAS:528:DC%2BC3cXhslOjsLo%3D
    • A Pandey J Mungalpara CG Mohan 2010 Mol Divers 14 39 49 10.1007/s11030-009-9139-7 1:CAS:528:DC%2BC3cXhslOjsLo%3D
    • (2010) Mol Divers , vol.14 , pp. 39-49
    • Pandey, A.1    Mungalpara, J.2    Mohan, C.G.3
  • 22
    • 33846426835 scopus 로고    scopus 로고
    • A computational study of the protein-ligand interactions in CDK2 inhibitors: Using quantum mechanics/molecular mechanics interaction energy as a predictor of the biological activity
    • DOI 10.1529/biophysj.106.091512
    • JH Alzate-Morales R Contreras A Soriano I Tuñon E Silla 2007 Biophys J 92 430 439 10.1529/biophysj.106.091512 1:CAS:528: DC%2BD2sXktVehtg%3D%3D (Pubitemid 46145776)
    • (2007) Biophysical Journal , vol.92 , Issue.2 , pp. 430-439
    • Alzate-Morales, J.H.1    Contreras, R.2    Soriano, A.3    Tunon, I.4    Silla, E.5
  • 23
    • 43049141516 scopus 로고    scopus 로고
    • 10.1007/s00214-007-0310-x 1:CAS:528:DC%2BD1cXltFyltbY%3D
    • Y Zhao D Truhlar 2008 Theor Chem Acc 120 215 241 10.1007/s00214-007-0310- x 1:CAS:528:DC%2BD1cXltFyltbY%3D
    • (2008) Theor Chem Acc , vol.120 , pp. 215-241
    • Zhao, Y.1    Truhlar, D.2
  • 28
    • 80051551481 scopus 로고    scopus 로고
    • Accelrys Software Inc. (2010) DSV 3.0
    • Accelrys Software Inc. (2010) DSV 3.0
  • 29
    • 0037899660 scopus 로고    scopus 로고
    • 10.1021/jp027815+ 1:CAS:528:DC%2BD3sXjvFOhsro%3D
    • P Ren JW Ponder 2003 The J Phys Chem B 107 5933 5947 10.1021/jp027815+ 1:CAS:528:DC%2BD3sXjvFOhsro%3D
    • (2003) The J Phys Chem B , vol.107 , pp. 5933-5947
    • Ren, P.1    Ponder, J.W.2
  • 30
    • 77954957650 scopus 로고    scopus 로고
    • Chesmitry Stewart Computational Version 10040L
    • Chesmitry Stewart Computational (2009) MOPAC 2009 Version 10040L
    • (2009) MOPAC 2009
  • 32
    • 67349218843 scopus 로고    scopus 로고
    • 10.1007/s00894-008-0420-y 1:CAS:528:DC%2BC3cXlslGitr4%3D
    • JJ Stewart 2009 Mol Model 15 765 805 10.1007/s00894-008-0420-y 1:CAS:528:DC%2BC3cXlslGitr4%3D
    • (2009) Mol Model , vol.15 , pp. 765-805
    • Stewart, J.J.1
  • 33
    • 35448937584 scopus 로고    scopus 로고
    • Optimization of parameters for semiempirical methods V: Modification of NDDO approximations and application to 70 elements
    • DOI 10.1007/s00894-007-0233-4
    • JJ Stewart 2007 Mol Model 13 1173 1213 10.1007/s00894-007-0233-4 1:CAS:528:DC%2BD2sXhtlequr7N (Pubitemid 47629446)
    • (2007) Journal of Molecular Modeling , vol.13 , Issue.12 , pp. 1173-1213
    • Stewart, J.J.P.1
  • 36
    • 0026005186 scopus 로고
    • 10.1021/bi00098a024 1:CAS:528:DyaK3MXltV2ht7s%3D
    • LJ Hyland TA Tomaszek TD Meek 1991 Biochemistry 30 8454 8463 10.1021/bi00098a024 1:CAS:528:DyaK3MXltV2ht7s%3D
    • (1991) Biochemistry , vol.30 , pp. 8454-8463
    • Hyland, L.J.1    Tomaszek, T.A.2    Meek, T.D.3
  • 38
    • 20144369541 scopus 로고    scopus 로고
    • Virtual screening for β-secretase (BACE1) inhibitors reveals the importance of protonation states at Asp32 and Asp228
    • DOI 10.1021/jm049133b
    • T Polgar GM Keserü 2005 J Med Chem 48 3749 3755 10.1021/jm049133b 1:CAS:528:DC%2BD2MXjvVSlu7c%3D (Pubitemid 40776849)
    • (2005) Journal of Medicinal Chemistry , vol.48 , Issue.11 , pp. 3749-3755
    • Polgar, T.1    Keseru, G.M.2
  • 39
    • 4744338363 scopus 로고    scopus 로고
    • Modeling the protonation states of the catalytic aspartates in β-secretase
    • DOI 10.1021/jm049817j
    • R Rajamani CH Reynolds 2004 J Med Chem 47 5159 5166 10.1021/jm049817j 1:CAS:528:DC%2BD2cXnsFaksb8%3D (Pubitemid 39314913)
    • (2004) Journal of Medicinal Chemistry , vol.47 , Issue.21 , pp. 5159-5166
    • Rajamani, R.1    Reynolds, C.H.2
  • 40
    • 0347694970 scopus 로고    scopus 로고
    • Determination of the Active Site Protonation State of β-Secretase from Molecular Dynamics Simulation and Docking Experiment: Implications for Structure-Based Inhibitor Design
    • DOI 10.1021/ja0304493
    • H Park S Lee 2003 J Am Chem Soc 125 16416 16422 10.1021/ja0304493 1:CAS:528:DC%2BD3sXps1Wgs7s%3D (Pubitemid 38020666)
    • (2003) Journal of the American Chemical Society , vol.125 , Issue.52 , pp. 16416-16422
    • Park, H.1    Lee, S.2
  • 41
    • 7444257387 scopus 로고    scopus 로고
    • Efficient evaluation of binding free energy using continuum electrostatics solvation
    • DOI 10.1021/jm049726m
    • D Huang A Caflisch 2004 J Med Chem 47 5791 5797 10.1021/jm049726m 1:CAS:528:DC%2BD2cXotVShs78%3D (Pubitemid 39447274)
    • (2004) Journal of Medicinal Chemistry , vol.47 , Issue.23 , pp. 5791-5797
    • Huang, D.1    Caflisch, A.2
  • 43
    • 0004209464 scopus 로고    scopus 로고
    • Wallingford
    • Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, Scalmani G, Barone V, Mennucci B, Petersson GA, Nakatsuji H, Caricato M, Li X, Hratchian HP, Izmaylov AF, Bloino J, Zheng G, Sonnenberg JL, Hada M, Ehara M, Toyota K, Fukuda R, Hasegawa J, Ishida M, Nakajima T, Honda Y, Kitao O, Nakai H, Vreven T, Montgomery JA, Peralta JE, Ogliaro F, Bearpark M, Heyd JJ, Brothers E, Kudin KN, Staroverov VN, Kobayashi R, Normand J, Raghavachari K, Rendell A, Burant JC, Iyengar SS, Tomasi J, Cossi M, Rega N, Millam NJ, Klene M, Knox JE, Cross JB, Bakken V, Adamo C, Jaramillo J, Gomperts R, Stratmann RE, Yazyev O, Austin AJ, Cammi R, Pomelli C, Ochterski JW, Martin RL, Morokuma K, Zakrzewski VG, Voth GA, Salvador P, Dannenberg JJ, Dapprich S, Daniels AD, Farkas Ö, Foresman JB, Ortiz JV, Cioslowski J, Fox DJ (2009) Gaussian, Inc., Wallingford
    • (2009) Gaussian, Inc.
    • Frisch Mj, T.1
  • 44
    • 78449275560 scopus 로고    scopus 로고
    • 10.1002/jcc.21600 1:CAS:528:DC%2BC3cXhsVCjsL%2FF
    • AR Allouche 2011 J Comput Chem 32 174 182 10.1002/jcc.21600 1:CAS:528:DC%2BC3cXhsVCjsL%2FF
    • (2011) J Comput Chem , vol.32 , pp. 174-182
    • Allouche, A.R.1
  • 45
    • 84890021933 scopus 로고
    • 10.1080/00268977000101561 1:CAS:528:DC%2BD2sXht1alt7fM
    • SF Boys F Bernardi 1970 Mol Phys 19 553 566 10.1080/00268977000101561 1:CAS:528:DC%2BD2sXht1alt7fM
    • (1970) Mol Phys , vol.19 , pp. 553-566
    • Boys, S.F.1    Bernardi, F.2
  • 46
    • 0000517934 scopus 로고
    • 10.1021/j100322a003 1:CAS:528:DyaL1cXit1Ojsb8%3D
    • J Almlof T Helgaker PR Taylor 1988 J Phys Chem 92 3029 3033 10.1021/j100322a003 1:CAS:528:DyaL1cXit1Ojsb8%3D
    • (1988) J Phys Chem , vol.92 , pp. 3029-3033
    • Almlof, J.1    Helgaker, T.2    Taylor, P.R.3
  • 47
    • 50849143200 scopus 로고    scopus 로고
    • 10.1214/08-STS256
    • SM Stigler 2008 Stat Sci 23 261 271 10.1214/08-STS256
    • (2008) Stat Sci , vol.23 , pp. 261-271
    • Stigler, S.M.1
  • 49
    • 25044455217 scopus 로고
    • 10.1016/0009-2614(88)85250-3 1:CAS:528:DyaL1MXhs1SmtLo%3D
    • M Head-Gordon JA Pople MJ Frisch 1988 Chem Phys Lett 153 503 506 10.1016/0009-2614(88)85250-3 1:CAS:528:DyaL1MXhs1SmtLo%3D
    • (1988) Chem Phys Lett , vol.153 , pp. 503-506
    • Head-Gordon, M.1    Pople, J.A.2    Frisch, M.J.3


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