Linkage maps from multiple genetic crosses and loci linked to growth-related virulent phenotype in Plasmodium yoelii

Proceedings of the National Academy of Sciences of the United States of America

Volumn 108, Issue 31, 2011, Pages

  Li, Jian ^a,b   Pattaradilokrat, Sittiporn ^b   Zhu, Feng ^a   Jiang, Hongying ^b   Liu, Shengfa ^a   Hong, Lingxian ^a   Fu, Yong ^c   Koo, Lily ^b   Xu, Wenyue ^c   Pan, Weiqing ^d   Carlton, Jane M ^e   Kaneko, Osamu ^f   Carter, Richard ^g   Wootton, John C ^h   Su, Xin Zhuan ^b  

^a XIAMEN UNIVERSITY   (China)

^b NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES   (United States)

^c THIRD MILITARY MEDICAL UNIVERSITY   (China)

^d SECOND MILITARY MEDICAL UNIVERSITY   (China)

^e NEW YORK UNIVERSITY MEDICAL CENTER   (United States)

^f NAGASAKI UNIVERSITY   (Japan)

^g UNIVERSITY OF EDINBURGH   (United Kingdom)

^h NATIONAL INSTITUTES OF HEALTH   (United States)

Author keywords

Crossover; Genetic mapping; Inheritance; Rodent

Indexed keywords

CONTIG;

ANIMAL CELL; ANIMAL EXPERIMENT; ANIMAL MODEL; ANIMAL TISSUE; ARTICLE; BACTERIAL GROWTH; BACTERIAL VIRULENCE; BACTERIUM ISOLATION; CELL MEMBRANE; CELL SURFACE; CHROMOSOME 10; CHROMOSOME 13; CHROMOSOME 7; CONTROLLED STUDY; ERYTHROCYTE; FEMALE; GENE LOCUS; GENE MAPPING; GENETIC CROSS; GENETIC LINKAGE; GENOTYPE; GROWTH RATE; MICROSATELLITE MARKER; MOUSE; NONHUMAN; PARASITEMIA; PLASMODIUM YOELII; PRIORITY JOURNAL; PROGENY; PROTEIN BINDING; SEQUENCE ANALYSIS;

ANIMALS; CHROMOSOME MAPPING; CHROMOSOMES; ERYTHROCYTES; FEMALE; GENES, PROTOZOAN; GENOME, PROTOZOAN; MALARIA; MICE; MICE, INBRED C57BL; MUTATION; PHYLOGENY; PLASMODIUM YOELII; SPECIES SPECIFICITY; VIRULENCE;

PLASMODIUM YOELII; RODENTIA;

EID: 79961213996     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1102261108     Document Type: Article

References (43)

1. Su X, et al. (1999) A genetic map and recombination parameters of the human malaria parasite Plasmodium falciparum. Science 286:1351-1353.
2. Martinelli A, et al. (2005) A genetic approach to the de novo identification of targets of strain-specific immunity in malaria parasites. Proc Natl Acad Sci USA 102:814-819. (Pubitemid 40282748)
3. Hayton K, et al. (2008) Erythrocyte binding protein PfRH5 polymorphisms determine species-specific pathways of Plasmodium falciparum invasion. Cell Host Microbe 4:40-51. (Pubitemid 351958114)
4. Su X, Hayton K, Wellems TE (2007) Genetic linkage and association analyses for trait mapping in Plasmodium falciparum. Nat Rev Genet 8:497-506. (Pubitemid 46955213)
5. Martinelli A, et al. (2005) An AFLP-based genetic linkage map of Plasmodium chabaudi chabaudi. Malar J 4:11.
6. Li J, et al. (2009) Hundreds of microsatellites for genotyping Plasmodium yoelii parasites. Mol Biochem Parasitol 166:153-158.
7. Culleton R, Martinelli A, Hunt P, Carter R (2005) Linkage group selection: Rapid gene discovery in malaria parasites. Genome Res 15:92-97.
8. Pattaradilokrat S, Culleton RL, Cheesman SJ, Carter R (2009) Gene encoding erythrocyte binding ligand linked to blood stage multiplication rate phenotype in Plasmodium yoelii yoelii. Proc Natl Acad Sci USA 106:7161-7166.
9. Otsuki H, et al. (2009) Single amino acid substitution in Plasmodium yoelii erythrocyte ligand determines its localization and controls parasite virulence. Proc Natl Acad Sci USA 106:7167-7172.
10. Carlton JM, et al. (2002) Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. Nature 419:512-519.
11. Kooij TW, et al. (2005) A Plasmodium whole-genome synteny map: Indels and synteny breakpoints as foci for species-specific genes. PLoS Pathog 1:e44.
12. Walliker D, Sanderson A, Yoeli M, Hargreaves BJ (1976) A genetic investigation of virulence in a rodent malaria parasite. Parasitology 72:183-194.
13. Pattaradilokrat S, Cheesman SJ, Carter R (2008) Congenicity and genetic polymorphism in cloned lines derived from a single isolate of a rodent malaria parasite. Mol Biochem Parasitol 157:244-247.
14. Uzureau P, Barale JC, Janse CJ, Waters AP, Breton CB (2004) Gene targeting demonstrates that the Plasmodium berghei subtilisin PbSUB2 is essential for red cell invasion and reveals spontaneous genetic recombination events. Cell Microbiol 6:65-78. (Pubitemid 38111589)
15. Thompson J, et al. (2004) PTRAMP; a conserved Plasmodium thrombospondin-related apical merozoite protein. Mol Biochem Parasitol 134:225-232. (Pubitemid 38304950)
16. Janse CJ, Carlton JM, Walliker D, Waters AP (1994) Conserved location of genes on polymorphic chromosomes of four species of malaria parasites. Mol Biochem Parasitol 68:285-296.
17. Khan A, et al. (2005) Composite genome map and recombination parameters derived from three archetypal lineages of Toxoplasma gondii. Nucleic Acids Res 33:2980-2992. (Pubitemid 41511235)
18. Broman KW, Wu H, Sen S, Churchill GA (2003) R/qtl: QTL mapping in experimental crosses. Bioinformatics 19:889-890. (Pubitemid 36582406)
19. Preiser PR, Jarra W, Capiod T, Snounou G (1999) A rhoptry-protein- associated mechanism of clonal phenotypic variation in rodent malaria. Nature 398:618-622. (Pubitemid 29183689)
20. Walliker D, Carter R, Morgan S (1971) Genetic recombination in malaria parasites. Nature 232:561-562.
21. Walliker D, et al. (1987) Genetic analysis of the human malaria parasite Plasmodium falciparum. Science 236:1661-1666. (Pubitemid 17091020)
22. Wellems TE, et al. (1990) Chloroquine resistance not linked to mdr-like genes in a Plasmodium falciparum cross. Nature 345:253-255.
23. Grech K, et al. (2002) Numerous, robust genetic markers for Plasmodium chabaudi by the method of amplified fragment length polymorphism. Mol Biochem Parasitol 123:95-104. (Pubitemid 35247935)
24. Su X, Kirkman LA, Fujioka H, Wellems TE (1997) Complex polymorphisms in an approximately 330 kDa protein are linked to chloroquine-resistant P. falciparum in Southeast Asia and Africa. Cell 91:593-603. (Pubitemid 27513651)
25. Withers-Martinez C, et al. (2008) Malarial EBA-175 region VI crystallographic structure reveals a KIX-like binding interface. J Mol Biol 375:773-781. (Pubitemid 350297288)
26. Khan SM, Jarra W, Bayele H, Preiser PR (2001) Distribution and characterisation of the 235 kDa rhoptry multigene family within the genomes of virulent and avirulent lines of Plasmodium yoelii. Mol Biochem Parasitol 114:197-208. (Pubitemid 32510756)
27. Culleton R, Kaneko O (2010) Erythrocyte binding ligands in malaria parasites: Intracellular trafficking and parasite virulence. Acta Trop 114:131-137.
28. Reilly Ayala HB, Wacker MA, Siwo G, Ferdig MT (2010) Quantitative trait loci mapping reveals candidate pathways regulating cell cycle duration in Plasmodium falciparum. BMC Genomics 11:577.
29. Grigg ME, Bonnefoy S, Hehl AB, Suzuki Y, Boothroyd JC (2001) Success and virulence in Toxoplasma as the result of sexual recombination between two distinct ancestries. Science 294:161-165. (Pubitemid 32952969)
30. Pattaradilokrat S, Cheesman SJ, Carter R (2007) Linkage group selection: Towards identifying genes controlling strain specific protective immunity in malaria. PLoS ONE 2:e857.
31. Vaidya AB, et al. (1995) A genetic locus on Plasmodium falciparum chromosome 12 linked to a defect in mosquito-infectivity and male gametogenesis. Mol Biochem Parasitol 69:65-71.
32. Ferdig MT, et al. (2004) Dissecting the loci of low-level quinine resistance in malaria parasites. Mol Microbiol 52:985-997. (Pubitemid 38916169)
33. Hayton K, Su XZ (2008) Drug resistance and genetic mapping in Plasmodium falciparum. Curr Genet 54:223-239.
34. Gonzales JM, et al. (2008) Regulatory hotspots in the malaria parasite genome dictate transcriptional variation. PLoS Biol 6:e238.
35. Yuan J, et al. (2009) Genetic mapping of targets mediating differential chemical phenotypes in Plasmodium falciparum. Nat Chem Biol 5:765-771.
36. Li J, et al. (2007) Typing Plasmodium yoelii microsatellites using a simple and affordable fluorescent labeling method. Mol Biochem Parasitol 155:94-102. (Pubitemid 47238447)
37. Yoeli M, Hargreaves B, Carter R, Walliker D (1975) Sudden increase in virulence in a strain of Plasmodium berghei yoelii. Ann Trop Med Parasitol 69:173-178.
38. Mu J, et al. (2007) Genome-wide variation and identification of vaccine targets in the Plasmodium falciparum genome. Nat Genet 39:126-130. (Pubitemid 46026512)
39. Pattaradilokrat S, Li J, Su XZ (2011) Protocol for production of a genetic cross of the rodent malaria parasites. J Vis Exp, 10.3791/2365.
40. Lander E, et al. (1987) MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174-181.
41. Dawy Z, et al. (2006) Gene mapping and marker clustering using Shannon's mutual information. IEEE/ACM Trans Comput Biol Bioinformatics 3:47-56. (Pubitemid 43269826)
42. Nelson GW, O'Brien SJ (2006) Using mutual information to measure the impact of multiple genetic factors on AIDS. J Acquir Immune Defic Syndr 42:347-354. (Pubitemid 44050014)
43. Prokhorov AV (2001) Kendall coefficient of rank correlation. Online Encyclopedia of Mathematics, ed Hazewinkel M (Springer, CWI, Amsterdam).