Biochemical characterization of a sphingomonad isolate from the ascocarp of white truffle (Tuber magnatum Pico)

Archives of Biological Sciences

Volumn 63, Issue 3, 2011, Pages 697-704

  Pavic A ^a,b   Stankovic S ^b   Marjanović, Žaklina ^a  

^a UNIVERSITY OF BELGRADE   (Serbia)

^b UNIVERSITY OF BELGRADE   (Serbia)

Author keywords

Phosphate solubilization; Sphingobium; Tuber magnatum

Indexed keywords

EID: 79961187472     PISSN: 03544664     EISSN: None     Source Type: Journal    
DOI: 10.2298/ABS1103697P     Document Type: Article

References (38)

1. Alexander, D. B. and D. A. Zuberer (1991). Use of chrome azurol S reagents to evaluate siderophore production by rhizosphere bacteria. Biol. Fertil. Soils. 12, 39-45.
2. Altschul, S. F., Madden, A. A., Schaffer, J., Zhang, Z., Zhang, W., Miller, and D. J. Lipman (1997). Gapped BLAST and PSIBLAST: a new generation of protein database search programs. Nucleic Acids Research. 25, 3389-3402.
3. Balkwill, D. L., Fredrickson, J. K. and M. F. Romine (2006). Sphingomonas and related genera. In: The Prokaryotes 3rd edition. (Eds. M. Dworkin, S. Falkow, E. Rosenberg, K.H. Schleifer and E. Stackebrandt), Vol 7. 605-629. Springer-Verlag, New York.
4. Barbieri, E., Bertini, L., Rossi, I., Ceccaroli, P., Saltarelli, R. and C. Guidi (2005). New evidence for bacterial diversity in the ascoma of the ectomycorrhizal fungus Tuber borchii Vittad. FEMS Microbiol. Lett. 247, 23-35.
5. Barbieri, E., Guidi, C., Bertaux, J., Frey-Klett, P., Garbaye, J., Ceccaroli, P., Saltarelli, R., Zambonelli, A. and V. Stocchi (2007). Occurrence and diversity of bacterial communities in Tuber magnatum during truffle maturation. Environmental Microbiology. 9, 2234-2246.
6. Barry, D., Jaillard, B., Staunton, S. and G. Callot (1995). Translocation and metabolism of phosphate following absorption by the ascocarps of Tuber melanosporum and T. aestivum. Mycological Research. 99 (2), 167-172.
7. Barry, D., Staunton, S., and G. Callot (1994). Mode of the absorption of water and nutrients by ascocarps of Tuber melanosporum and T. aestivum: a radioactive tracer technique. Canadian Journal of Botany. 72, 317-322.
8. Boersma, F.G.H., Andreote, F.A., Warmink, J.A. and J.D. Van Elsas (2009). Selection of Sphingomonadaceae at the base of Laccaria proxima and Russula exalbicans fruiting bodies. Applied and Environmental Microbiology. 75, 1979-1989.
9. Ceccaroli, P., Saltarelli, R., Cesari, P., Pierleoni, R., Sacconi, C., Vallorani, L., Rubini, P., Stocchi, V. and F. Martin (2003). Carbohydrate and amino acid metabolism in Tuber borchii mycelium during glucose utilization: a 13C NMR study. Fungal Genetics and Biology. 39, 168-175.
10. Chernin, L., Ismailov, Z., Haran, S., and I. Chet (1995). Chitinolytic Enterobacter agglomerans antagonistic to fungal plant pathogens. Appl. Environ. Microbio. 61, 1720-1726.
11. Daane, L. L., Harjono, I., Zylstra, G. J. and M. M. Häggblom (2001). Isolation and characterization of polycyclic aromatic hydrocarbon-degrading bacteria associated with the rhizosphere of salt marsh plants. Appl. Environ. Microbiol. 67, 2683-2691.
12. Dekker, R. F. H., Van Tiel, M., Narayanasamy, R. D., and A. de Melo Barbosa (1997). Screening for microbial trehalases: extracellular trehalases produced by Fusarium species. World Journal of Microbiology and Biotechnology, 13, 73-79.
13. Frey-Klett. P., Garbaye, J. and M. T. Tarkka (2007). The mycorrhiza helper bacteria revisited. New Phytol. 176, 22-36.
14. Hankin, L., Zucker, M. and D. C. Sands (1971). Improved Solid Medium for the Detection and enumeration of pectolytic bacteria. Applied Microbiology. 22, 205-209.
15. Koide, R. T., Shumway, D. L. and C. M. Stevens (2000). Soluble carbohydrates of red pine (Pinus resinosa) mycorrhizas and mycorrhizal fungi. Mycol Res. 104, 834-840.
16. Lanyi, B. (1987). Classical and rapid identifiction methods for medically important bacteria. In: Methods in microbiology - Current methods for classification and identification of microorganisms (Eds. Colwell, R.R., and Grigorova, R.), 19, 37-38, Academic Press, New York.
17. Leys, N. M. E. J., Ryngaert, A., Bastiaens, L., Verstraete, W., Top, E.M. and D. Springael (2004). Occurrence and Phylogenetic Diversity of Sphingomonas Strains in Soils Contaminated with Polycyclic Aromatic Hydrocarbons. Appl. Envir. Microbiol. 70, 1944-1955.
18. Liang, Q. and G. Lloyd-Jones (2010). Sphingobium scionense sp. nov., an aromatic hydrocarbon-degrading bacterium isolated from contaminated sawmill soil. Int. J Syst. Evol. Microbiol. 60, 413-416.
19. Mahasneh, A. M. and D. J. Stewart (1980). A medium for detecting beta-(1-3) glucanase activity in bacteria. Journal of Applied Bacteriology, 48, 457-458.
20. Mello, A., Murat, C. and P. Bonfante (2006). Truffles: much more than a prized and local fungal delicacy. FEMS Microbiol. Lett. 260, 1-8.
21. Murat, C., Vizzini, A., Bonfante, P. and A. Mello (2005). Morphological and molecular typing of the below-ground fungal community in a natural Tuber magnatum truffle-ground. FEMS Microbiol. Lett. 245, 307-313.
22. Murphy, J. and J. P. Riley(1962). A modified single solution method for the determination of phosphate in natural waters. Anal. Chim. Acta, 27, 31-36.
23. Nautiyal, C.S. (1999). An efficient microbiological growth medium for screening phosphate solubilizing microorganisms. FEMS Microbiology Letters 170, 265-270.
24. Prakash, O. and R. Lal (2006). Description of Sphingobium fuliginis sp. nov., a phenanthrene-degrading bacterium from a fly ash dumping site, and reclassification of Sphingomonas cloacae as Sphingobium cloacae comb. nov. Int J Syst. Evol. Microbiol, 56, 2147 - 2152.
25. Rangel-Castro, J. I., Levenfors, J. J. and E. Danell (2002). Physiological and genetic characterization of fluorescent Pseudomonas associated with Cantharellus cibarius. Canadian Journal of Microbiology, 48, 739-748.
26. Rodina, A.G., (1969). Bacterial population of humified lakes. Microbiology (SSSR) 38 (3), 446-451.
27. Rodríguez, H., Fraga, R., Gonzalez, T. and Y. Bashan (2006). Genetics of phosphate solubilization and its potential applications for improving plant growth-promoting bacteria. Plant and Soil, 287, 15-21.
28. Roussel-Delif, L., Tarnawski, S., Hamelin, J., Philippot, L., Aragno, M. and N. Fromin (2005). Frequency and diversity of nitrate reductase genes among nitrate-dissimilating Pseudomonas in the rhizosphere of perennial grasses grown in field conditions. Microbial Ecology, 49, 63-72.
29. Sbrana, C., Agnolucci, M., Bedini, S., Lepera, A., Toffanin, A., Giovannetti, M. and M. P. Nuti (2002). Diversity of culturable bacterial populations associated to Tuber borchii ectomycorrhizas and their activity on T. borchii mycelial growth. FEMS Microbiology Letters, 211, 195-201.
30. Stolz, A., Schmidt-Maag, C., Denner, E. B. M., Busse, H. J., Egli, T. and P. Kämpfer (2000). Description of Sphingomonas xenophaga sp. nov. for strains BN6T and N,N which degrade xenobiotic aromatic compounds. Int J Syst Evol Microbiol, 50, 35-41.
31. Tamura, K., Dudley, J., Nei, M. and S. Kumar (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution, 24, 1596-1599.
32. Teather, R. M. and P. J. Wood (1982). Use of Congo red-polysaccharide interactions in enumeration and characterization of cellulolytic bacteria from the bovine rumen. Appl. Envir. Microbiol. 43, 777-780.
33. Thompson, J. D., Higgins, D. G. and T. J. Gibson 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions specific gap penalties and weight matrix choice. Nucleic Acids Research, 22, 4673-4680.
34. Tindall, B.J., Sikorski, J., Smibert, R.A. and N.R. Krieg (2007). Phenotypic characterization and the principles of comparative systematic. In: Methods for general and molecular microbiology, 3rd edition (Eds Readdy, C.A. Beveridge, T.J., Breznak, J.A., Marzluf, G.A., Schmidt, T.M. and Snyder, L.R.), 335-386, ASM Press, Washington, D.C.
35. Uroz, S., Calvaruso, C., Turpault, M.P., Pierrat, J.C., Mustin, C. and P. Frey-Klett (2007). Effect of the mycorrhizosphere on the genotypic and metabolic diversity of the soil bacterial communities involved in mineral weathering in a forest soil. Applied and Environmental Microbiology, 73, 3019-3027.
36. Ushiba, Y., Takahara, Y. and H. Ohta (2003). Sphingobium amiense sp. nov., a novel nonylphenol-degrading bacterium isolated from a river sediment. Int J Syst Evol Microbiol. 53, 2045-2048.
37. Young, C. C., Arun, A. B., Kämpfer, P., Busse, H. J., Lai, W. A., Chen, W.M., Shen, F. T. and P. D. Rekha (2008). Sphingobium rhizovicinum sp. nov., isolated from rhizosphere soil of Fortunella hindsii (Champ. Ex Benth.) Swingle. International Journal of Systematic and Evolutionary Microbiology, 58, 1801-1806.
38. Zimmer, D., Baum, C., Leinweber, P., Hrynkiewicz, K., and R. Meissner (2009). Associated bacteria increase the phytoextraction of cadmium and zinc from metal-contaminated soil by mycorrhizal willows. Int J Phytorem. 11, 200-213.