-
1
-
-
33646845322
-
Analysis and management of HIV peptide microarray experiments
-
Lopez-Campos GH, Garcia-Albert L, Martin-Sanchez F, Garcia-Saiz A. Analysis and management of HIV peptide microarray experiments. Methods Inf Med 2006, 45:158-162.
-
(2006)
Methods Inf Med
, vol.45
, pp. 158-162
-
-
Lopez-Campos, G.H.1
Garcia-Albert, L.2
Martin-Sanchez, F.3
Garcia-Saiz, A.4
-
2
-
-
67651210667
-
Development of a novel peptide microarray for large-scale epitope mapping of food allergens
-
10.1016/j.jaci.2009.05.024, 2757036, 19577281
-
Lin J, Bardina L, Shreffler WG, Andreae DA, Ge Y, Wang J, Bruni FM, Fu Z, Han Y, Sampson HA. Development of a novel peptide microarray for large-scale epitope mapping of food allergens. J Allergy Clin Immunol 2009, 124:315-322. 10.1016/j.jaci.2009.05.024, 2757036, 19577281.
-
(2009)
J Allergy Clin Immunol
, vol.124
, pp. 315-322
-
-
Lin, J.1
Bardina, L.2
Shreffler, W.G.3
Andreae, D.A.4
Ge, Y.5
Wang, J.6
Bruni, F.M.7
Fu, Z.8
Han, Y.9
Sampson, H.A.10
-
3
-
-
73949152574
-
Epitope mapping of human chromogranin A by peptide microarrays
-
10.1007/978-1-60327-394-7_10, 19649596
-
Cretich M, Longhi R, Corti A, Damin F, Di Carlo G, Sedini V, Chiari M. Epitope mapping of human chromogranin A by peptide microarrays. Methods Mol Biol 2009, 570:221-232. 10.1007/978-1-60327-394-7_10, 19649596.
-
(2009)
Methods Mol Biol
, vol.570
, pp. 221-232
-
-
Cretich, M.1
Longhi, R.2
Corti, A.3
Damin, F.4
Di Carlo, G.5
Sedini, V.6
Chiari, M.7
-
4
-
-
77956580142
-
Peptide arrays for screening cancer specific peptides
-
10.1021/ac1003085, 20799711
-
Ahmed S, Mathews AS, Byeon N, Lavasanifar A, Kaur K. Peptide arrays for screening cancer specific peptides. Anal Chem 2010, 82:7533-7541. 10.1021/ac1003085, 20799711.
-
(2010)
Anal Chem
, vol.82
, pp. 7533-7541
-
-
Ahmed, S.1
Mathews, A.S.2
Byeon, N.3
Lavasanifar, A.4
Kaur, K.5
-
5
-
-
73949087554
-
Rapid identification of linear protein domain binding motifs using peptide SPOT arrays
-
10.1007/978-1-60327-394-7_6, 19649592
-
Briant DJ, Murphy JM, Leung GC, Sicheri F. Rapid identification of linear protein domain binding motifs using peptide SPOT arrays. Methods Mol Biol 2009, 570:175-185. 10.1007/978-1-60327-394-7_6, 19649592.
-
(2009)
Methods Mol Biol
, vol.570
, pp. 175-185
-
-
Briant, D.J.1
Murphy, J.M.2
Leung, G.C.3
Sicheri, F.4
-
6
-
-
73949148230
-
Characterization of kinase target phosphorylation consensus motifs using peptide SPOT arrays
-
10.1007/978-1-60327-394-7_7, 19649593
-
Leung GC, Murphy JM, Briant D, Sicheri F. Characterization of kinase target phosphorylation consensus motifs using peptide SPOT arrays. Methods Mol Biol 2009, 570:187-195. 10.1007/978-1-60327-394-7_7, 19649593.
-
(2009)
Methods Mol Biol
, vol.570
, pp. 187-195
-
-
Leung, G.C.1
Murphy, J.M.2
Briant, D.3
Sicheri, F.4
-
7
-
-
20444479808
-
Peptide arrays for kinase profiling
-
10.1002/cbic.200400314, 15742386
-
Schutkowski M, Reineke U, Reimer U. Peptide arrays for kinase profiling. Chembiochem 2005, 6:513-521. 10.1002/cbic.200400314, 15742386.
-
(2005)
Chembiochem
, vol.6
, pp. 513-521
-
-
Schutkowski, M.1
Reineke, U.2
Reimer, U.3
-
8
-
-
4544293437
-
High-content peptide microarrays for deciphering kinase specificity and biology
-
10.1002/anie.200453900, 18629986
-
Schutkowski M, Reimer U, Panse S, Dong L, Lizcano JM, Alessi DR, Schneider-Mergener J. High-content peptide microarrays for deciphering kinase specificity and biology. Angew Chem Int Ed Engl 2004, 43:2671-2674. 10.1002/anie.200453900, 18629986.
-
(2004)
Angew Chem Int Ed Engl
, vol.43
, pp. 2671-2674
-
-
Schutkowski, M.1
Reimer, U.2
Panse, S.3
Dong, L.4
Lizcano, J.M.5
Alessi, D.R.6
Schneider-Mergener, J.7
-
9
-
-
78649712509
-
Antibody signatures defined by high-content peptide microarray analysis
-
10.1007/978-1-60761-845-4_13, 20857365
-
Masch A, Zerweck J, Reimer U, Wenschuh H, Schutkowski M. Antibody signatures defined by high-content peptide microarray analysis. Methods Mol Biol 2010, 669:161-172. 10.1007/978-1-60761-845-4_13, 20857365.
-
(2010)
Methods Mol Biol
, vol.669
, pp. 161-172
-
-
Masch, A.1
Zerweck, J.2
Reimer, U.3
Wenschuh, H.4
Schutkowski, M.5
-
10
-
-
29244448340
-
Microarray data analysis: from disarray to consolidation and consensus
-
10.1038/nrg1749, 16369572
-
Allison DB, Cui X, Page GP, Sabripour M. Microarray data analysis: from disarray to consolidation and consensus. Nat Rev Genet 2006, 7:55-65. 10.1038/nrg1749, 16369572.
-
(2006)
Nat Rev Genet
, vol.7
, pp. 55-65
-
-
Allison, D.B.1
Cui, X.2
Page, G.P.3
Sabripour, M.4
-
11
-
-
36148969152
-
Computational approaches to analysis of DNA microarray data
-
Quackenbush J. Computational approaches to analysis of DNA microarray data. Yearb Med Inform 2006, 91-103.
-
(2006)
Yearb Med Inform
, pp. 91-103
-
-
Quackenbush, J.1
-
12
-
-
73949154412
-
A designed peptide chip: protein fingerprinting technology with a dry peptide array and statistical data mining
-
10.1007/978-1-60327-394-7_13, 19649599
-
Usui K, Tomizaki KY, Mihara H. A designed peptide chip: protein fingerprinting technology with a dry peptide array and statistical data mining. Methods Mol Biol 2009, 570:273-284. 10.1007/978-1-60327-394-7_13, 19649599.
-
(2009)
Methods Mol Biol
, vol.570
, pp. 273-284
-
-
Usui, K.1
Tomizaki, K.Y.2
Mihara, H.3
-
13
-
-
73949090733
-
PASE: a web-based platform for peptide/protein microarray experiments
-
10.1007/978-1-60327-394-7_24, 19649610
-
Pamelard F, Even G, Apostol C, Preda C, Dhaenens C, Fafeur V, Desmet R, Melnyk O. PASE: a web-based platform for peptide/protein microarray experiments. Methods Mol Biol 2009, 570:413-430. 10.1007/978-1-60327-394-7_24, 19649610.
-
(2009)
Methods Mol Biol
, vol.570
, pp. 413-430
-
-
Pamelard, F.1
Even, G.2
Apostol, C.3
Preda, C.4
Dhaenens, C.5
Fafeur, V.6
Desmet, R.7
Melnyk, O.8
-
14
-
-
73949144103
-
Qualitative and quantitative analysis of peptide microarray binding experiments using SVM-PEPARRAY
-
10.1007/978-1-60327-394-7_23, 19649609
-
Chen G, Zuo Z, Zhu Q, Hong A, Zhou X, Gao X, Li T. Qualitative and quantitative analysis of peptide microarray binding experiments using SVM-PEPARRAY. Methods Mol Biol 2009, 570:403-411. 10.1007/978-1-60327-394-7_23, 19649609.
-
(2009)
Methods Mol Biol
, vol.570
, pp. 403-411
-
-
Chen, G.1
Zuo, Z.2
Zhu, Q.3
Hong, A.4
Zhou, X.5
Gao, X.6
Li, T.7
-
15
-
-
69449101951
-
A Burkholderia pseudomallei protein microarray reveals serodiagnostic and cross-reactive antigens
-
10.1073/pnas.0812080106, 2717108, 19666533
-
Felgner PL, Kayala MA, Vigil A, Burk C, Nakajima-Sasaki R, Pablo J, Molina DM, Hirst S, Chew JS, Wang D, Tan G, Duffield M, Yang R, Neel J, Chantratita N, Bancroft G, Lertmemongkolchai G, Davies DH, Baldi P, Peacock S, Titball RW. A Burkholderia pseudomallei protein microarray reveals serodiagnostic and cross-reactive antigens. Proc Natl Acad Sci USA 2009, 106:13499-13504. 10.1073/pnas.0812080106, 2717108, 19666533.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 13499-13504
-
-
Felgner, P.L.1
Kayala, M.A.2
Vigil, A.3
Burk, C.4
Nakajima-Sasaki, R.5
Pablo, J.6
Molina, D.M.7
Hirst, S.8
Chew, J.S.9
Wang, D.10
Tan, G.11
Duffield, M.12
Yang, R.13
Neel, J.14
Chantratita, N.15
Bancroft, G.16
Lertmemongkolchai, G.17
Davies, D.H.18
Baldi, P.19
Peacock, S.20
Titball, R.W.21
more..
-
16
-
-
35548964148
-
Validation of peptide epitope microarray experiments and extraction of quality data
-
10.1016/j.jim.2007.07.015, 17765917
-
Nahtman T, Jernberg A, Mahdavifar S, Zerweck J, Schutkowski M, Maeurer M, Reilly M. Validation of peptide epitope microarray experiments and extraction of quality data. J Immunol Methods 2007, 328:1-13. 10.1016/j.jim.2007.07.015, 17765917.
-
(2007)
J Immunol Methods
, vol.328
, pp. 1-13
-
-
Nahtman, T.1
Jernberg, A.2
Mahdavifar, S.3
Zerweck, J.4
Schutkowski, M.5
Maeurer, M.6
Reilly, M.7
-
17
-
-
73949129790
-
Visualisation and pre-processing of peptide microarray data
-
10.1007/978-1-60327-394-7_21, 19649607
-
Reilly M, Valentini D. Visualisation and pre-processing of peptide microarray data. Methods Mol Biol 2009, 570:373-389. 10.1007/978-1-60327-394-7_21, 19649607.
-
(2009)
Methods Mol Biol
, vol.570
, pp. 373-389
-
-
Reilly, M.1
Valentini, D.2
-
18
-
-
79951480123
-
-
R Foundation for Statistical Computing, Vienna, Austria, [ISBN 3-900051-07-0], R Development Core Team
-
R Development Core Team R: A Language and Environment for Statistical Computing 2010, R Foundation for Statistical Computing, Vienna, Austria, [ISBN 3-900051-07-0], R Development Core Team., http://www.R-project.org
-
(2010)
R: A Language and Environment for Statistical Computing
-
-
-
19
-
-
0035478854
-
Random Forests
-
Breiman L. Random Forests. Machine Learning 2001, 45:5-32.
-
(2001)
Machine Learning
, vol.45
, pp. 5-32
-
-
Breiman, L.1
-
20
-
-
77954194030
-
Deuteration distribution estimation with improved sequence coverage for HX/MS experiments
-
10.1093/bioinformatics/btq165, 20439256
-
Lou X, Kirchner M, Renard BY, Koethe U, Boppel S, Graf C, Lee CT, Steen JA, Steen H, Mayer MP, Hamprecht FA. Deuteration distribution estimation with improved sequence coverage for HX/MS experiments. Bioinformatics 2010, 26:1535-1541. 10.1093/bioinformatics/btq165, 20439256.
-
(2010)
Bioinformatics
, vol.26
, pp. 1535-1541
-
-
Lou, X.1
Kirchner, M.2
Renard, B.Y.3
Koethe, U.4
Boppel, S.5
Graf, C.6
Lee, C.T.7
Steen, J.A.8
Steen, H.9
Mayer, M.P.10
Hamprecht, F.A.11
-
21
-
-
0003684449
-
-
New York: Springer-Verlag
-
Hastie T, Tibshirani R, Friedman JH. The elements of statistical learning: data mining, inference, and prediction 2009, New York: Springer-Verlag.
-
(2009)
The elements of statistical learning: data mining, inference, and prediction
-
-
Hastie, T.1
Tibshirani, R.2
Friedman, J.H.3
-
23
-
-
49449098182
-
What is the expectation maximization algorithm?
-
10.1038/nbt1406, 18688245
-
Do CB, Batzoglou S. What is the expectation maximization algorithm?. Nat Biotechnol 2008, 26:897-899. 10.1038/nbt1406, 18688245.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 897-899
-
-
Do, C.B.1
Batzoglou, S.2
-
24
-
-
77953016667
-
Estimating the confidence of peptide identifications without decoy databases
-
10.1021/ac902892j, 20455556
-
Renard BY, Timm W, Kirchner M, Steen JA, Hamprecht FA, Steen H. Estimating the confidence of peptide identifications without decoy databases. Anal Chem 2010, 82:4314-4318. 10.1021/ac902892j, 20455556.
-
(2010)
Anal Chem
, vol.82
, pp. 4314-4318
-
-
Renard, B.Y.1
Timm, W.2
Kirchner, M.3
Steen, J.A.4
Hamprecht, F.A.5
Steen, H.6
-
25
-
-
70450203033
-
Mixtools: An R Package for Analyzing Finite Mixture Models
-
Benaglia T, Chauveau D, Hunter DR, Young D. mixtools: An R Package for Analyzing Finite Mixture Models. J Stat Soft 2009, 32(6):1-29.
-
(2009)
J Stat Soft
, vol.32
, Issue.6
, pp. 1-29
-
-
Benaglia, T.1
Chauveau, D.2
Hunter, D.R.3
Young, D.4
|