-
1
-
-
54749141609
-
Complete rpoB gene sequencing as a suitable supplement to DNA- DNA hybridization for bacterial species and genus delineation
-
Adékambi, T., Shinnick, T. M., Raoult, D. & Drancourt, M. (2008). Complete rpoB gene sequencing as a suitable supplement to DNA- DNA hybridization for bacterial species and genus delineation. Int J Syst Evol Microbiol 58, 1807-1814.
-
(2008)
Int J Syst Evol Microbiol
, vol.58
, pp. 1807-1814
-
-
Adékambi, T.1
Shinnick, T.M.2
Raoult, D.3
Drancourt, M.4
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schä ffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
34248225741
-
Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum
-
Barns, S. M., Cain, E. C., Sommerville, L. & Kuske, C. R. (2007). Acidobacteria phylum sequences in uranium-contaminated subsurface sediments greatly expand the known diversity within the phylum. Appl Environ Microbiol 73, 3113-3116.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 3113-3116
-
-
Barns, S.M.1
Cain, E.C.2
Sommerville, L.3
Kuske, C.R.4
-
5
-
-
78049437553
-
The effect of nutrient deposition on bacterial communities in Arctic tundra soil
-
Campbell, B. J., Polson, S. W., Hanson, T. E., Mack, M. C. & Schuur, E. A. (2010). The effect of nutrient deposition on bacterial communities in Arctic tundra soil. Environ Microbiol 12, 1842-1854.
-
(2010)
Environ Microbiol
, vol.12
, pp. 1842-1854
-
-
Campbell, B.J.1
Polson, S.W.2
Hanson, T.E.3
Mack, M.C.4
Schuur, E.A.5
-
6
-
-
0017758250
-
A rapid method for the base ratio determination of bacterial DNA
-
Cashion, P., Holder-Franklin, M. A., McCully, J. & Franklin, M. (1977). A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81, 461-466.
-
(1977)
Anal Biochem
, vol.81
, pp. 461-466
-
-
Cashion, P.1
Holder-Franklin, M.A.2
McCully, J.3
Franklin, M.4
-
7
-
-
0032733240
-
Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer
-
Coates, J. D., Ellis, D. J., Gaw, C. V. & Lovley, D. R. (1999). Geothrix fermentans gen. nov., sp. nov., a novel Fe(III)-reducing bacterium from a hydrocarbon-contaminated aquifer. Int J Syst Bacteriol 49, 1615-1622.
-
(1999)
Int J Syst Bacteriol
, vol.49
, pp. 1615-1622
-
-
Coates, J.D.1
Ellis, D.J.2
Gaw, C.V.3
Lovley, D.R.4
-
8
-
-
34247606048
-
Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria
-
Eichorst, S. A., Breznak, J. A. & Schmidt, T. M. (2007). Isolation and characterization of soil bacteria that define Terriglobus gen. nov., in the phylum Acidobacteria. Appl Environ Microbiol 73, 2708-2717.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 2708-2717
-
-
Eichorst, S.A.1
Breznak, J.A.2
Schmidt, T.M.3
-
9
-
-
55849095838
-
Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales ord. nov., Holophagaceae fam. nov., Holophagales ord. nov. and Holophagae classis nov. in the phylum 'Acidobacteria'
-
Fukunaga, Y., Kurahashi, M., Yanagi, K., Yokota, A. & Harayama, S. (2008). Acanthopleuribacter pedis gen. nov., sp. nov., a marine bacterium isolated from a chiton, and description of Acanthopleuribacteraceae fam. nov., Acanthopleuribacterales ord. nov., Holophagaceae fam. nov., Holophagales ord. nov. and Holophagae classis nov. in the phylum 'Acidobacteria'. Int J Syst Evol Microbiol 58, 2597-2601.
-
(2008)
Int J Syst Evol Microbiol
, vol.58
, pp. 2597-2601
-
-
Fukunaga, Y.1
Kurahashi, M.2
Yanagi, K.3
Yokota, A.4
Harayama, S.5
-
10
-
-
0030464460
-
SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny
-
Galtier, N., Gouy, M. & Gautier, C. (1996). SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12, 543-548.
-
(1996)
Comput Appl Biosci
, vol.12
, pp. 543-548
-
-
Galtier, N.1
Gouy, M.2
Gautier, C.3
-
12
-
-
0020549589
-
Studies on the spectrophotometric determination of DNA hybridization from renaturation rates
-
Hub, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
-
(1983)
Syst Appl Microbiol
, vol.4
, pp. 184-192
-
-
Hub, V.A.R.1
Festl, H.2
Schleifer, K.H.3
-
13
-
-
33644952722
-
Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes
-
Janssen, P. H. (2006). Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes. Appl Environ Microbiol 72, 1719-1728.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 1719-1728
-
-
Janssen, P.H.1
-
14
-
-
63349105158
-
A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses
-
Jones, R. T., Robeson, M. S., Lauber, C. L., Hamady, M., Knight, R. & Fierer, N. (2009). A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses. ISME J 3, 442-453.
-
(2009)
ISME J
, vol.3
, pp. 442-453
-
-
Jones, R.T.1
Robeson, M.S.2
Lauber, C.L.3
Hamady, M.4
Knight, R.5
Fierer, N.6
-
15
-
-
0027289343
-
Comparison of nucleic acid hybridization and fluorometry for measurement of the relationship between RNA/DNA ratio and growth rate in a marine bacterium
-
Kerkhof, L. & Ward, B. B. (1993). Comparison of nucleic acid hybridization and fluorometry for measurement of the relationship between RNA/DNA ratio and growth rate in a marine bacterium. Appl Environ Microbiol 59, 1303-1309.
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 1303-1309
-
-
Kerkhof, L.1
Ward, B.B.2
-
16
-
-
0026080952
-
Acidobacterium capsulatum gen. nov., sp. nov. an acidophilic chemoorganotrophic bacterium containing menaquinone from acidic mineral environment
-
Kishimoto, N., Kosako, Y. & Tano, T. (1991). Acidobacterium capsulatum gen. nov., sp. nov. an acidophilic chemoorganotrophic bacterium containing menaquinone from acidic mineral environment. Curr Microbiol 22, 1-7.
-
(1991)
Curr Microbiol
, vol.22
, pp. 1-7
-
-
Kishimoto, N.1
Kosako, Y.2
Tano, T.3
-
17
-
-
47049112538
-
Edaphobacter modestus gen. nov., sp. nov., and Edaphobacter aggregans sp. nov., acidobacteria isolated from alpine and forest soils
-
Koch, I. H., Gich, F., Dunfield, P. F. & Overmann, J. (2008). Edaphobacter modestus gen. nov., sp. nov., and Edaphobacter aggregans sp. nov., acidobacteria isolated from alpine and forest soils. Int J Syst Evol Microbiol 58, 1114-1122.
-
(2008)
Int J Syst Evol Microbiol
, vol.58
, pp. 1114-1122
-
-
Koch, I.H.1
Gich, F.2
Dunfield, P.F.3
Overmann, J.4
-
18
-
-
76549113040
-
Bryobacter aggregatus gen. nov., sp. nov., a peat-inhabiting, aerobic chemo-organotroph from subdivision 3 of the Acidobacteria
-
Kulichevskaya, I. S., Suzina, N. E., Liesack, W. & Dedysh, S. N. (2010). Bryobacter aggregatus gen. nov., sp. nov., a peat-inhabiting, aerobic chemo-organotroph from subdivision 3 of the Acidobacteria. Int J Syst Evol Microbiol 60, 301-306.
-
(2010)
Int J Syst Evol Microbiol
, vol.60
, pp. 301-306
-
-
Kulichevskaya, I.S.1
Suzina, N.E.2
Liesack, W.3
Dedysh, S.N.4
-
19
-
-
0001857117
-
16S/23S rRNA sequencing
-
Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley
-
Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley.
-
(1991)
Nucleic Acid Techniques In Bacterial Systematics
, pp. 115-175
-
-
Lane, D.J.1
-
20
-
-
0027937278
-
Holophaga foetida gen. nov., sp. nov., a new, homoacetogenic bacterium degrading methoxylated aromatic compounds
-
Liesack, W., Bak, F., Kreft, J. U. & Stackebrandt, E. (1994). Holophaga foetida gen. nov., sp. nov., a new, homoacetogenic bacterium degrading methoxylated aromatic compounds. Arch Microbiol 162, 85-90.
-
(1994)
Arch Microbiol
, vol.162
, pp. 85-90
-
-
Liesack, W.1
Bak, F.2
Kreft, J.U.3
Stackebrandt, E.4
-
21
-
-
33645222887
-
Characterization of psychrotolerant heterotrophic bacteria from Finnish Lapland
-
Mannisto, M. K. & Haggblom, M. M. (2006). Characterization of psychrotolerant heterotrophic bacteria from Finnish Lapland. Syst Appl Microbiol 29, 229-243.
-
(2006)
Syst Appl Microbiol
, vol.29
, pp. 229-243
-
-
Mannisto, M.K.1
Haggblom, M.M.2
-
22
-
-
33846222279
-
Bacterial communities in Arctic fjelds of Finnish Lapland are stable but highly pH-dependent
-
Mannisto, M. K., Tiirola, M. & Haggblom, M. M. (2007). Bacterial communities in Arctic fjelds of Finnish Lapland are stable but highly pH-dependent. FEMS Microbiol Ecol 59, 452-465.
-
(2007)
FEMS Microbiol Ecol
, vol.59
, pp. 452-465
-
-
Mannisto, M.K.1
Tiirola, M.2
Haggblom, M.M.3
-
23
-
-
70350191488
-
Effect of freeze-thaw cycles on bacterial communities of arctic tundra soil
-
Mannisto, M. K., Tiirola, M. & Haggblom, M. M. (2009). Effect of freeze-thaw cycles on bacterial communities of arctic tundra soil. Microb Ecol 58, 621-631.
-
(2009)
Microb Ecol
, vol.58
, pp. 621-631
-
-
Mannisto, M.K.1
Tiirola, M.2
Haggblom, M.M.3
-
24
-
-
77954737653
-
Mucilaginibacter frigoritolerans sp. nov., Mucilaginibacter lappiensis sp. nov. and Mucilaginibacter mallensis sp. nov., isolated from soil and lichen samples
-
Mannisto, M. K., Tiirola, M., McConnell, J. & Haggblom, M. M. (2010). Mucilaginibacter frigoritolerans sp. nov., Mucilaginibacter lappiensis sp. nov. and Mucilaginibacter mallensis sp. nov., isolated from soil and lichen samples. Int J Syst Evol Microbiol, 60, 2556-2849.
-
(2010)
Int J Syst Evol Microbiol
, vol.60
, pp. 2556-2849
-
-
Mannisto, M.K.1
Tiirola, M.2
McConnell, J.3
Haggblom, M.M.4
-
25
-
-
0000198211
-
Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography
-
Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
-
(1989)
Int J Syst Bacteriol
, vol.39
, pp. 159-167
-
-
Mesbah, M.1
Premachandran, U.2
Whitman, W.B.3
-
26
-
-
0002435103
-
Determinative and cytological light microscopy
-
Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology
-
Murray, R. G. E., Doetsch, R. N. & Robinow, C. F. (1994). Determinative and cytological light microscopy. In Methods for General and Molecular Bacteriology, pp. 21-41. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
-
(1994)
Methods For General and Molecular Bacteriology
, pp. 21-41
-
-
Murray, R.G.E.1
Doetsch, R.N.2
Robinow, C.F.3
-
27
-
-
78650071259
-
Granulicella paludicola gen. nov., sp. nov., Granulicella pectinivorans sp. nov., Granulicella aggregans sp. nov. and Granulicella rosea sp. nov., acidophilic, polymer-degrading acidobacteria from Sphagnum peat bogs
-
Pankratov, T. A. & Dedysh, S. N. (2010). Granulicella paludicola gen. nov., sp. nov., Granulicella pectinivorans sp. nov., Granulicella aggregans sp. nov. and Granulicella rosea sp. nov., acidophilic, polymer-degrading acidobacteria from Sphagnum peat bogs. Int J Syst Evol Microbiol 60, 2951-2959.
-
(2010)
Int J Syst Evol Microbiol
, vol.60
, pp. 2951-2959
-
-
Pankratov, T.A.1
Dedysh, S.N.2
-
28
-
-
43449101881
-
Substrate-induced growth and isolation of Acidobacteria from acidic Sphagnum peat
-
Pankratov, T. A., Serkebaeva, Y. M., Kulichevskaya, I. S., Liesack, W. & Dedysh, S. N. (2008). Substrate-induced growth and isolation of Acidobacteria from acidic Sphagnum peat. ISME J 2, 551-560.
-
(2008)
ISME J
, vol.2
, pp. 551-560
-
-
Pankratov, T.A.1
Serkebaeva, Y.M.2
Kulichevskaya, I.S.3
Liesack, W.4
Dedysh, S.N.5
-
29
-
-
0002924916
-
Characterization and classification of microbes by rep-PCR genomic fingerprinting and computer-assisted pattern analysis
-
Edited by G. Caetano-Anollés & P. M. Gresshoff. New York: Wiley
-
Rademaker, J. L. W. & De Bruijn, F. J. (1997). Characterization and classification of microbes by rep-PCR genomic fingerprinting and computer-assisted pattern analysis. In DNA Markers: Protocols, Applications and Overviews, pp. 151-171. Edited by G. Caetano-Anollés & P. M. Gresshoff. New York: Wiley.
-
(1997)
DNA Markers: Protocols, Applications and Overviews
, pp. 151-171
-
-
Rademaker, J.L.W.1
de Bruijn, F.J.2
-
30
-
-
0034068106
-
Comparison of AFLP and rep-PCR genomic fingerprinting with DNA-DNA homo-logy studies: Xanthomonas as a model system
-
Rademaker, J. L. W., Hoste, B., Louws, F. J., Kersters, K., Swings, J., Vauterin, L., Vauterin, P. & de Bruijn, F. J. (2000). Comparison of AFLP and rep-PCR genomic fingerprinting with DNA-DNA homo-logy studies: Xanthomonas as a model system. Int J Syst Evol Microbiol 50, 665-677.
-
(2000)
Int J Syst Evol Microbiol
, vol.50
, pp. 665-677
-
-
Rademaker, J.L.W.1
Hoste, B.2
Louws, F.J.3
Kersters, K.4
Swings, J.5
Vauterin, L.6
Vauterin, P.7
de Bruijn, F.J.8
-
31
-
-
18744382447
-
Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys
-
Sait, M., Hugenholtz, P. & Janssen, P. H. (2002). Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys. Environ Microbiol 4, 654-666.
-
(2002)
Environ Microbiol
, vol.4
, pp. 654-666
-
-
Sait, M.1
Hugenholtz, P.2
Janssen, P.H.3
-
32
-
-
34547781750
-
MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0
-
Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
33
-
-
0031574072
-
The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
34
-
-
63849207489
-
Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils
-
other authors
-
Ward, N. L., Challacombe, J. F., Janssen, P. H., Henrissat, B., Coutinho, P. M., Wu, M., Xie, G., Haft, D. H., Sait, M. & other authors (2009). Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils. Appl Environ Microbiol 75, 2046-2056.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 2046-2056
-
-
Ward, N.L.1
Challacombe, J.F.2
Janssen, P.H.3
Henrissat, B.4
Coutinho, P.M.5
Wu, M.6
Xie, G.7
Haft, D.H.8
Sait, M.9
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