Identification of optimality and robustness in dictyostelium external signal receptors

IFAC Proceedings Volumes (IFAC-PapersOnline)

Volumn 17, Issue 1 PART 1, 2008, Pages

  Kim, Jongrae ^a   Heslop Harrison, J S ^a   Postlethwaite, Ian ^a   Bates, Declan G ^a  

^a NONE

Author keywords

Control in system biology; Linear systems; Robustness analysis

Indexed keywords

CELL RECEPTORS; CELL VOLUME; CELLULAR SYSTEM; DICTYOSTELIUM; DICTYOSTELIUM DISCOIDEUM; EXTERNAL SIGNALS; EXTERNAL STIMULATION; INTERACTION NETWORKS; NETWORK PARAMETERS; OPTIMAL PERFORMANCE; OPTIMALITY; OUTER SHELLS; RECEPTOR INTERACTION; RESPONSE SPEED; ROBUSTNESS ANALYSIS; STEP CHANGES; STRUCTURAL CHARACTERISTICS;

ACTIVE NETWORKS; BIOLOGY; FETAL MONITORING; LIGANDS; LINEAR SYSTEMS; ROBUSTNESS (CONTROL SYSTEMS);

CELL MEMBRANES;

EID: 79961019390     PISSN: 14746670     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.3182/20080706-5-KR-1001.1429     Document Type: Conference Paper

References (18)

1. Lise Bankir, Mina Ahloulay, Peter N. Devreotes, and Carole A. Parent. Extracellular cAMP inhibits proximalreabsorption: are plasma membrane cAMP receptors involved? Am J Physiol Renal Physiol, 282:376-392, 2002.
2. N. Barkai and S. Leibler. Robustness in simple biochemical networks. Nature, 387(26):913-917, 1999.
3. Pierre Bongrand. Ligand-receptor interactions. Reports on Progress in Physics, 62(6):921-968, June 1999.
4. Stefano Ciliberti, Olivier C. Martin, and Andreas Wagner. Robustness can evolve gradually in complex regulatory gene networks with varying topology. PLoS Computational Biology, 3(2):doi:10.1371/journal.pcbi.0030015, 2007.
5. Marie E. Csete and John C. Doyle. Reverse engineering of biological complexity. Science, 295:1664-1669, 2002.
6. DictyBase. URL http://dictybase.org. Robert G. Endres, Joseph J. Falke, and Ned S. Wingreen. Chemotaxis receptor complexes: From signaling to assembly. PLoS Computational Biology, 3(7): doi:10.1371/journal.pcbi.0030150, 2007.
7. G. F. Franklin, J. D. Powell, and A. Emani-Naeini. Feedback Control of Dynamic Systems. Addison-Wesley Publishing Company Inc., third edition, 1994.
8. Daniel T. Gillespie. Exact stochastic simulation of coupled chemical reactions. The Journal of Physical Chemistry, 81(25):2340-2361, December 1977.
9. Daisuke Ishii, Kenichi L. Ishikawa, Takehisa Fujita, and Masaharu Nakazawa. Stochastic modelling for gradient sensing by chemotactic cells. Science and Technology of Advanced Materials, 5:715-718, 2004.
10. Robert N. Jorissen, Francesca Walker, Normand Pouliot, Thomas P.J. Garrett, Colin W. Ward, and Antony W. Burgess. Epidermal growth factor receptor: mechanisms of activation and signalling. Experimental Cell Research, 284:31-53, 2003.
11. Hiroyuki Kurata, Hana El-Samad, Rei Iwasaki, Hisao Ohtake, John C. Doyle, Irina Grigorova, Carol A. Gross, and Mustafa Khammash. Module-based analysis of robustness tradeo?s in the heat shock response system. PLoS Computational Biology, 2(7): doi:10.1371/journal.pcbi.0020059, 2006.
12. M. T. Laub and W. F. Loomis. A molecular network that produces spontaneous oscillations in excitable cells of Dictyostelium. Molecular Biology of the Cell, 9:3521-3532, 1998.
13. Ankang Li, Murali Sadasivam, and Jeak Ling Ding. Receptor-ligand interaction between vitellogenin receptor (VtgR) and vitellogenin (Vtg), implications on low density lipoprotein receptor and apolipoprotein B/E. Journal of Biological Chemistry, 278(5):2799-2806, January 2003.
14. Mineko Maeda, Sijie Lu, Gad Shaulsky, Yuji Miyazaki, Hidekazu Kuwayama, Yoshimasa Tanaka, Adam Kuspa, and William F. Loomis. Periodic signaling controlled by an oscillatory circuit that includes protein kinases ERK2 and PKA. Science, 304(5672):875-878, May 2004.
15. Mineo Morohashi, Amanda E. Winnz, Mark T. Borisuk, Hamid Bolouri, John Doyle, and Hiroaki Kitano. Robustness as a measure of plausibility in models of biochemical networks. Journal of Theoretical Biology, 216 (1):19-30, May 2002.
16. K. Rao, J.B. Harford, T. Rouault, A. McClelland, F. H. Ruddle, and R. D. Klausner. Transcriptional regulation by iron of the gene for the transferrin receptor. Molecular and Cell Biology, 6(1):236-240, January 1986.
17. Harish Shankaran, Haluk Resat, and H. Steven Wiley. Cell surface receptors for signal transduction and ligand transport: A design principles study. PLoS Computational Biology, 3(6):doi:10.1371/journal.pcbi.0030101, 2007.
18. D. R. Soll, J. Yarger, and M. Mirick. Stationary phase and the cell cycle of Dictyostelium discoideum in liquid nutrient medium. Journal of Cell Science, 20(3):513-523, 1976.