Chemotaxis receptor complexes: From signaling to assembly

PLoS Computational Biology

Volumn 3, Issue 7, 2007, Pages 1385-1393

  Endres, Robert G ^a   Falke, Joseph J ^b   Wingreen, Ned S ^a  

^a PRINCETON UNIVERSITY   (United States)

^b UNIVERSITY OF COLORADO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMISTRY; CELL MEMBRANES; COMPLEX NETWORKS; FREE ENERGY; LIGANDS; SIGNALING;

CHEMOTAXI; CYTOPLASMIC MEMBRANE; IN-VITRO; LIGAND BINDING; LIGAND INTERACTIONS; MODEL TAR; RECEPTOR COMPLEX; RELATIVE FREE ENERGY; SIGNALING NETWORKS; SIZE-DISTRIBUTION;

DIMERS;

CHEA KINASE; DIMER; LIGAND; MEMBRANE RECEPTOR; OLIGOMER; BACTERIAL PROTEIN; CELL SURFACE RECEPTOR; CHEMOTACTIC FACTOR; ESCHERICHIA COLI PROTEIN; TAR PROTEIN, E COLI;

AMINO ACID SEQUENCE; ARTICLE; CHEMOTAXIS; COMPARATIVE STUDY; DOSE RESPONSE; ENERGY; KINETICS; LIGAND BINDING; MEMBRANE; NONHUMAN; PROTEIN FUNCTION; PROTEIN INTERACTION; SIGNAL TRANSDUCTION; BIOLOGICAL MODEL; CHEMORECEPTOR; COMPUTER SIMULATION; ESCHERICHIA COLI; METABOLISM; PHYSIOLOGY;

BACTERIA (MICROORGANISMS);

BACTERIAL PROTEINS; CHEMORECEPTOR CELLS; CHEMOTACTIC FACTORS; CHEMOTAXIS; COMPUTER SIMULATION; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; MODELS, BIOLOGICAL; RECEPTORS, CELL SURFACE; SIGNAL TRANSDUCTION;

EID: 34547562263     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.0030150     Document Type: Article

References (41)

1. Sourjik V, Berg HC (2002) Receptor sensitivity in bacterial chemotaxis. Proc Natl Acad Sci U S A 99: 123-127.
2. Berg HC, Brown DA (1972) Chemotaxis in Escherichia coli analyzed by three-dimensional tracking. Nature 239: 500-504.
3. Alon U, Surette MG, Barkai N, Leibler S (1999) Robustness in bacterial chemotaxis. Nature 397: 168-171.
4. Bray D, Levin MD, Morton-Firth CJ (1998) Receptor clustering as a cellular mechanism to control sensitivity. Nature 393: 85-88.
5. Duke TA, Bray D (1999) Heightened sensitivity of a lattice of membrane receptors. Proc Natl Acad Sci U S A 96: 10104-10108.
6. Sourjik V, Berg HC (2004) Functional interactions between receptors in bacterial chemotaxis. Nature 428: 437-441.
7. Mello BA, Tu Y (2005) An allosteric model for heterogeneous receptor complexes: Understanding bacterial chemotaxis responses to multiple stimuli. Proc Natl Acad Sci U S A 102: 17354-17359.
8. Keymer JE, Endres RG, Skoge M, Meir Y, Wingreen NS (2006) Chemosensing in Escherichia coli: Two regimes of two-state receptors. Proc Natl Acad Sci U S A 103: 1786-1791.
9. Skoge S, Endres RG, Wingreen NS (2006) Receptor-receptor coupling in bacterial chemotaxis: Evidence for strongly coupled clusters. Biophys J 90: 4317-4326.
10. Endres RG, Wingreen NS (2006) Precise adaptation in bacterial chemotaxis through "assistance neighborhoods." Proc Natl Acad Sci U S A 103: 13040-13044.
11. Kentner D, Thiem S, Hildenbeutel M, Sourjik V (2006) Determinants of chemoreceptor cluster formation in Escherichia coli. Mol Microbiol 61: 407-417.
12. Kentner D, Sourjik V (2006) Spatial organization of the bacterial chemotaxis system. Curr Opin Microbiol 9: 619-624.
13. Bornhorst JA, Falke JJ (2001) Evidence that both ligand binding and covalent adaptation drive a two-state equilibrium in the aspartate receptor signaling complex. J Gen Physiol 118: 693-710.
14. Shrout AL, Montefusco DJ, Weis RM (2003) Template-directed assembly of receptor signaling complexes. Biochemistry 42: 13379-13385.
15. Lai RZ, Manson JM, Bormans AF, Draheim RR, Nguyen NT, et al. (2005) Cooperative signaling among bacterial chemoreceptors. Biochemistry 44: 14298-14307.
16. Kim KK, Yokota H, Kim SH (1999) Four-helical-bundle structure of the cytoplasmic domain of a serine chemotaxis receptor. Nature 400: 787-792.
17. Ames P, Studdert CA, Reiser RH, Parkinson JS (2002) Collaborative signaling by mixed chemoreceptor teams in Escherichia coli. Proc Natl Acad Sci U S A 99: 7060-7065.
18. Studdert CA, Parkinson JS (2004) Crosslinking snapshots of bacterial chemoreceptor squads. Proc Natl Acad Sci U S A 101: 2117-2122.
19. McAndrew RS, Ellis EA, Manson MD, Holzenburg A (2004) TEM analysis of chemoreceptor arrays in native membranes of E. coli. Microsc Microanal 10: 416.
20. Zhang P, Khursigara CM, Hartnell LM, Subramaniam S (2007) Direct visualization of Escherichia coli chemotaxis receptor arrays using cryoelectron microscopy. Proc Natl Acad Sci U S A 104: 3777-3781.
21. Bornhorst JA, Falke JJ (2003) Quantitative analysis of aspartate receptor signaling complex reveals that the homogeneous two-state model is inadequate: Development of a heterogeneous two-state model. J Mol Biol 326: 1597-1614.
22. Boldog T, Grimme S, Li M, Sligar SG, Hazelbauer GL (2006) Nanodiscs separate chemoreceptor oligomeric states and reveal their signaling properties. Proc Natl Acad Sci U S A 103: 11509-11514.
23. Monod J, Wyman J, Changeux JP (1965) On the nature of allosteric transitions: A plausible model. J Mol Biol 12: 88-118.
24. Asakura S, Honda H (1984) Two-state model for bacterial chemoreceptor proteins. The role of multiple methylation. J Mol Biol 176: 349-367.
25. Asinas AE, Weis RM (2006) Competitive and cooperative interactions in receptor signaling complexes. J Biol Chem 281: 30512-30523.
26. Maddock JR, Shapiro L (1993) Polar location of the chemoreceptor complex in the Escherichia coli cell. Science 259: 1717-1723.
27. Gestwicki JE, Lamanna AC, Harshey RM, McCarter LL, Kiessling LL, et al. (2000) Evolutionary conservation of methyl-accepting chemotaxis protein location in Bacteria and Archaea. J Bacteriol 182: 6499-6502.
28. Liberman L, Berg HC, Sourjik V (2004) Effect of chemoreceptor modification on assembly and activity of the receptor-kinase complex in Escherichia coli. J Bacteriol 186: 6643-6646.
29. Li G, Weis RM (2000) Covalent modification regulates ligand binding to receptor complexes in the chemosensory system of Escherichia coli. Cell 100: 357-365.
30. Lybarger SR, Nair U, Lilly AA, Hazelbauer GL, Maddock JR (2005) Clustering requires modified methyl-accepting sites in low-abundance but not high-abundance chemoreceptors of Escherichia coli. Mol Microbiol 56: 1078-1086.
31. Shiomi D, Banno S, Homma M, Kawagishi I (2005) Stabilization of polar localization of a chemoreceptor via its covalent modifications and its communication with a different chemoreceptor. J Bacteriol 187: 7647-7654.
32. Gebert JF, Overhoff B, Manson MD, Boos W (1988) The Tsr chemosensory transducer of Escherichia coli assembles into the cytoplasmic membrane via a SecA-dependent process. J Biol Chem 263: 16652-16660.
33. Shiomi D, Yoshimoto M, Homma M, Kawagishi I (2006) Helical distribution of the bacterial chemoreceptor via colocalization with the Sec protein translocation machinery. Mol Microbiol 60: 894-906.
34. Shih YL, Kawagishi I, Rothfield L (2005) The MreB and Min cytoskeletallike systems play independent roles in prokaryotic polar differentiation. Mol Microbiol 58: 917-928.
35. Dowhan W, Mileykovskaya E, Bogdanov M (2004) Diversity and versatility of lipid-protein interactions revealed by molecular genetic approaches. Biochim Biophys Acta 1666: 19-39.
36. Kawai F, Shoda M, Harashima R, Sadaie Y, Hara H, et al. (2004) Cardiolipin domains in Bacillus subtilis marburg membranes. J Bacteriol 186: 1475-1483.
37. Huang KC, Mukhopadhyay R, Wingreen NS (2006) A curvature-mediated mechanism for localization of lipids to bacterial poles. PLoS Comput Biol 2: e151.
38. Franzini-Armstrong C, Protasi F, Ramesh V (1999) Shape, size, and distribution of Ca(2+) release units and couplons in skeletal and cardiac muscles. Biophys J 77: 1528-1539.
39. Yin CC, Lai FA (2000) Intrinsic lattice formation by the ryanodine receptor calcium-release channel. Nat Cell Biol 2: 669-671.
40. Fotiadis D, Liang Y, Filipek S, Saperstein DA, Engel A, et al. (2003) Atomic-force microscopy: Rhodopsin dimers in native disc membranes. Nature 421: 127-128.
41. Vaknin A, Berg HC (2007) Physical responses of bacterial chemoreceptors. J Mol Biol 366: 1416-1423.