Studies of variability in Holm oak (Quercus ilex subsp. ballota [Desf.] Samp.) through acorn protein profile analysis

Journal of Proteomics

Volumn 74, Issue 8, 2011, Pages 1244-1255

  Galván, José Valero ^a   Valledor, Luis ^b   Cerrillo, Rafael M Navarro ^a   Gil Pelegrin, E ^c   Jorrín Novo, Jesus V ^a  

^a UNIVERSITY OF CÓRDOBA   (Spain)

^b UNIVERSITY OF VIENNA   (Austria)

^c Agrifood Research and Technology   (Spain)

Author keywords

Acorn proteomics; Holm oak variability; Quercus ilex proteomics

Indexed keywords

AVENIN; CHITINASE; GLUTENIN; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; PEROXIREDOXIN;

AMINO ACID SEQUENCE; ARTICLE; CLIMATE; GEOGRAPHY; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; OAK; PHYLOGENY; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN CONTENT; PROTEOMICS; QUERCUS ILEX; TEMPERATURE; TWO DIMENSIONAL ELECTROPHORESIS;

BALLOTA; QUERCUS ILEX;

EID: 79960984634     PISSN: 18743919     EISSN: 18767737     Source Type: Journal    
DOI: 10.1016/j.jprot.2011.05.003     Document Type: Article

References (63)

1. Pulido F.J., Díaz M., Hidalgo de Trucios S.J. Size structure and regeneration of Spanish Holm oak Quercus ilex forests and dehesas: effects of agroforestry use on their long-term sustainability. Forest Ecol Manage 2001, 146:1-13.
2. Gea-Izquierdo G., Cañellas I., Montero G. Acorn production in Spanish Holm oak woodlands. Invest Agrar Sist Recur For 2006, 15:339-354.
3. FAO Evaluación de los recursos forestales mundiales 2010, Informe nacional España, 2010. http://www.fao.org/forestry/20262-1-50.pdf.
4. Pausas J., Bladé C., Valdecantos A., Seva J., Fuentes D., Alloza J., et al. Pines and oaks in the restoration of Mediterranean landscapes of Spain: new perspectives for an old practice a review. Plant Ecol 2004, 171:209-220.
5. Soto A., Lorenzo Z., Gil L. Differences in fine-scale genetic structure and dispersal in Quercus ilex L. and Q. suber L.: consequences for regeneration of Mediterranean open woods. Heredity 2007, 99:601-607.
6. Burgarella C., Lorenzo Z., Jabbour-Zahab R., Lumaret R., Guichoux E., Petit R.J., et al. Detection of hybrids in nature: application to oaks (Quercus suber and Q. ilex). Heredity 2009, 102:442-452.
7. Castro-Díez P., Villar-Salvador P., Pérez-Rontomé C., Maestro-Martínez M., Montserrat-Martí G. Leaf morphology and leaf chemical composition in three Quercus (Fagaceae) species along a rainfall gradient in NE Spain. Trees-Structure and Function 1997, 11:127-134.
8. Jimenez P., de Heredia U.L., Collada C., Lorenzo Z., Gil L. High variability of chloroplast DNA in three Mediterranean evergreen oaks indicates complex evolutionary history. Heredity 2004, 93:510-515.
9. Lumaret R., Jabbour-Zahab R. Ancient and current gene flow between two distantly related Mediterranean oak species, Quercus suber and Q. ilex. Ann Bot 2009, 104:725-736.
10. Lumaret R., Tryphon-Dionnet M., Michaud H., Sanuy A., Ipotesi E., Born C., et al. Phylogeographical variation of chloroplast DNA in cork oak (Quercus suber). Ann Bot 2005, 96:853-861.
11. Toumi L., Lumaret R. Allozyme characterisation of four Mediterranean evergreen oak species. Biochem Syst Ecol 2001, 29:799-817.
12. Vakkari P., Blom A., Rusanen M., Raisio J., Toivonen H. Genetic variability of fragmented stands of pedunculate oak (Quercus robur) in Finland. Genetica 2006, 127:231-241.
13. Lumaret R., Mir C., Michaud H., Raynal V. Phylogeographical variation of chloroplast DNA in Holm oak (Quercus ilex L.). Mol Ecol 2002, 11:2327-2336.
14. Petit R.J., Brewer S., Bordács S., Burg K., Cheddadi R., Coart E., et al. Identification of refugia and post-glacial colonisation routes of European white oaks based on chloroplast DNA and fossil pollen evidence. Forest Ecol Manage 2002, 156:49-74.
15. Echevarría-Zomeño S., Ariza D., Jorge I., Lenz C., Del Campo A., Jorrin J.V., et al. Changes in the protein profile of Quercus ilex leaves in response to drought stress and recovery. J Plant Physiol 2009, 166:233-245.
16. Jorge I., Navarro Cerrillo R.M., Lenz C., Ariza D., Jorrin J. Variation in the Holm oak leaf proteome at different plant developmental stages, between provenances and in response to drought stress. Proteomics 2006, 6(Suppl 1):S207-S214.
17. Jorge I., Navarro Cerrillo R.M., Lenz C., Ariza D., Porras C., Jorrin J. The Holm oak leaf proteome: analytical and biological variability in the protein expression level assessed by 2-DE and protein identification tandem mass spectrometry de novo sequencing and sequence similarity searching. Proteomics 2005, 5:222-234.
18. Cherdouh A., Khelifi D., Carrillo J.M., Nieto-Taladriz M.T. The high and low molecular weight glutenin subunit polymorphism of Algerian durum wheat landraces and old cultivars. Plant Breed 2005, 124:338-342.
19. Karihaloo J.L., Kaur M., Singh S. Seed protein diversity in Solanum melongena L. and its wild and weedy relatives. Genetic Resources Crop Evol 2002, 49:533-539.
20. Stoilova T., Cholakova N., Markova M. Variation in seed protein and isoenzyme patterns in Cucurbita cultivars. Biol Plantarum 2006, 50:450-452.
21. Fonseca P.A., Ferreira R.B., Teixeira A.R. Seed proteins from Quercus suber. J Agric Food Chem 1997, 45:3443-3447.
22. Collada C., Caballero R.G., Casado R., Aragoncillo C. Seed storage proteins in Fagaceae: similarity between Castanea globulins and Quercus glutelins. Plant Sci 1991, 75:145-154.
23. Martín M., Navarro-Cerrillo R., Ortega P., Alvarez J. The use of cotyledon proteins to assess the genetic diversity in sweet Holm oak. J Forest Sci 2009, 55:526-531.
24. Bahrman N., Petit R.J. Genetic polymorphism in maritime pine (Pinus pinaster Ait.) assessed by two-dimensional gel electrophoresis of needle, bud, and pollen proteins. J Mol Evol 1995, 41:231-237.
25. Basha S.M. Identification of cultivar differences in seed polypeptide composition of peanuts (Arachis hypogaea L.) by two-dimensional polyacrylamide gel electrophoresis. Plant Physiol 1979, 63:301-306.
26. Chevalier F., Martin O., Rofidal V., Devauchelle A.D., Barteau S., Sommerer N., et al. Proteomic investigation of natural variation between Arabidopsis ecotypes. Proteomics 2004, 4:1372-1381.
27. Emre İ. Electrophoretic analysis of some Lathyrus L. species based on seed storage proteins. Genetic Resources Crop Evol 2009, 56:31-38.
28. Jacobsen S., Nesic L., Petersen M., Sondergaard I. Classification of wheat varieties: use of two-dimensional gel electrophoresis for varieties that can not be classified by matrix assisted laser desorpiton/ionization-time of flight-mass spectrometry and an artificial neural network. Electrophoresis 2001, 22:1242-1245.
29. Ostergaard O., Melchior S., Roepstorff P., Svensson B. Initial proteome analysis of mature barley seeds and malt. Proteomics 2002, 2:733-739.
30. Singh N., Matta N. Variation studies on seed storage proteins and phylogenetics of the genus Cucumis. Plant Syst Evol 2008, 275:209-218.
31. Yüzbaşioǧlu E., Açik L., Özcan S. Seed protein diversity among lentil cultivars. Biol Plantarum 2008, 52:126-128.
32. Petit R.J., Bahrman N., Baradat P.H. Comparison of genetic differentiation in maritime pine (Pinus pinaster Ait.) estimated using isozyme, total protein and terpenic loci. Heredity 1995, 75:382-389.
33. Vienne D.D., Burstin J., Gerber S., Leonardi A., Guilloux M.L., Murigneux A., et al. Two-dimensional electrophoresis of proteins as a source of monogenic and codominant markers for population genetics and mapping the expressed genome. Heredity 1996, 76:166-177.
34. Damerval C., De Vienne D., Zivy M., Thiellement H. Technical improvements in two-dimensional electrophoresis increase the level of genetic variation detected in wheat-seedling proteins. Electrophoresis 1986, 7:52-54.
35. Ramagli L.S., Rodriguez L.V. Quantitation of microgram amounts of protein in two-dimensional polyacrylamide gel electrophoresis sample buffer. Electrophoresis 1985, 6:559-563.
36. Laemmli U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 1970, 227:680-685.
37. Mathesius U., Keijzers G., Natera S.H., Weinman J.J., Djordjevic M.A., Rolfe B.G. Establishment of a root proteome reference map for the model legume Medicago truncatula using the expressed sequence tag database for peptide mass fingerprinting. Proteomics 2001, 1:1424-1440.
38. Gorg A., Postel W., Baumer M., Weiss W. Two-dimensional polyacrylamide gel electrophoresis, with immobilized pH gradients in the first dimension, of barley seed proteins: discrimination of cultivars with different malting grades. Electrophoresis 1992, 13:192-203.
39. Valledor L., Jorrin J. Back to the basics: maximizing the information obtained by quantitative two dimensional gel electrophoresis analyses by an appropriate experimental design and statistical analyses. J Proteomics 2010, 74:1-18.
40. Team R.D.C. R: a language and environment for statistical computing 2008, Foundation for Statistical Computing, Vienna, Austria.
41. Maldonado A.M., Echevarría-Zomeño S., Jean-Baptiste S., Hernández M., Jorrín-Novo J.V. Evaluation of three different protocols of protein extraction for Arabidopsis thaliana leaf proteome analysis by two-dimensional electrophoresis. J Proteomics 2008, 71:461-472.
42. Bonner F., Vozzo J. Seed biology and technology of Quercus. Gen. Tech. Rep. SO-66 1987, 21. U.S. Dept. of Agriculture, Forest Service, Southern Forest Experiment Station, New Orleans, LA.
43. Valero-Galvn J, Jorrín J, Gómez C, Ariza D, García-Olmo J, Navarro Cerrillo R. Population variability and mother tree selection in Holm oak (Quercus ilex L. subsp. ballota [Desf.] Samp.) based on acorn morphometry and chemical composition. Submitted to the European Journal of Forest Research. 2010.
44. Özcan T. Total protein and amino acid compositions in the acorns of Turkish Quercus L. taxa. Genetic Resources Crop Evol 2006, 53:419-429.
45. Barbero M., Loisel R., Quézel P. Biogeography, ecology and history of Mediterranean Quercus ilex ecosystems. Plant Ecol 1992, 99-100:19-34.
46. Corine H., Serge R. An examination of the interaction between climate, soil and leaf area index in a Quercus ilex ecosystem. Annals Forest Sci 2003, 60:153-161.
47. Ducousso A., Guyon J.P., Kremer A. Latitudinal and altitudinal variation of bud burst in western populations of sessile oak (Quercus petraea (Matt) Liebl). Annals Forest Sci 1996, 53:775-782.
48. Morales R., Vicente J.A., Galán de Mera A. cpDNA evidence of introgressions in Quercus L. (Fagaceae). The influence of the phytotopographic position. Flora 2005, 200:222-228.
49. Valledor L., Castillejo M.A., Lenz C., Rodriguez R., Canal M.J., Jorrin J. Proteomic analysis of Pinus radiata needles: 2-DE map and protein identification by LC/MS/MS and substitution-tolerant database searching. J Proteome Res 2008, 7:2616-2631.
50. Valledor L., Jorrin J.V., Rodriguez J.L., Lenz C., Meijon M., Rodriguez R., et al. Combined proteomic and transcriptomic analysis identifies differentially expressed pathways associated to Pinus radiata needle maturation. J Proteome Res 2010, 9:3954-3979.
51. Consoli L., Damerval C. Quantification of individual zein isoforms resolved by two-dimensional electrophoresis: genetic variability in 45 maize inbred lines. Electrophoresis 2001, 22:2983-2989.
52. Marques K., Sarazin B., Chane-Favre L., Zivy M., Thiellemen H. Comparative proteomics to establish genetic relationships in the Brassicaceae family. Proteomics 2001, 1:1457-1462.
53. Casey R., Short M.N. Variation in amino acid composition of legumin from Pisum. Phytochemistry 1981, 20:21-23.
54. Chileh T., Esteban-García B., Diego López A., García-Maroto F. Characterization of the 11S globulin gene family in the castor plant Ricinus communis L. J Agric Food Chem 2009, 58:272-281.
55. Derbyshire E., Wright D.J., Boulter D. Legumin and vicilin, storage proteins of legume seeds. Phytochemistry 1976, 15:3-24.
56. Maplestone P., Allison J., Hussein E.H.A., Gamal El-Din A.E.-K.Y., Gatehouse J.A., Boulter D. Variation of the legumin seed storage protein amongst Vicia species. Phytochemistry 1985, 24:1717-1723.
57. Scippa G.S., Rocco M., Ialicicco M., Trupiano D., Viscosi V., Di Michele M., et al. The proteome of lentil (Lens culinaris Medik.) seeds: discriminating between landraces. Electrophoresis 2010, 31:497-506.
58. Wobus U., Bäumlein H., Bassüner R., Heim U., Jung R., Müntz K., et al. Characteristics of two types of legumin genes in the field bean (Vicia faba L.var. minor) genome as revealed by cDNA analysis. FEBS Lett 1986, 201:74-80.
59. Bourgeois M., Jacquin F., Savois V., Sommerer N., Labas V., Henry C., et al. Dissecting the proteome of pea mature seeds reveals the phenotypic plasticity of seed protein composition. Proteomics 2009, 9:254-271.
60. Gallardo K., Le Signor C., Vandekerckhove J., Thompson R.D., Burstin J. Proteomics of Medicago truncatula seed development establishes the time frame of diverse metabolic processes related to reserve accumulation. Plant Physiologists 2003, 133:664-682.
61. Bestel-Corre G., Dumas-Gaudot E., Gianinazzi-Pearson V., Gianinazzi S. Mycorrhiza-related chitinase and chitosanase activity isoforms in Medicago truncatula Gaertn. Symbiosis 2002, 32:173-194.
62. Salzer P., Bonanomi A., Beyer K., Vögeli-Lange R., Aeschbacher R.A., Lange J., et al. Differential expression of eight chitinase genes in Medicago truncatula roots during mycorrhiza formation, nodulation, and pathogen Infection. Mol Plant Microbe Interact 2000, 13:763-777.
63. Gallardo K., Job C., Groot S.P., Puype M., Demol H., Vandekerckhove J., et al. Proteomic analysis of Arabidopsis seed germination and priming. Plant Physiologists 2001, 126:835-848.