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Volumn 10, Issue 38, 2011, Pages 7381-7388

De novo structural modeling and computational sequence analysis of a bacteriocin protein isolated from Rhizobium leguminosarum bv. viciae strain LC-31

Author keywords

Bacteriocin; Nitrogen fixation; Nodulation; Protein modelling; Rhizobium; Symbiosis

Indexed keywords

BACTERIOCIN;

EID: 79960852235     PISSN: 16845315     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (2)

References (36)
  • 1
    • 33747866099 scopus 로고    scopus 로고
    • DISULFIND: A disulfide bonding state and cysteine connectivity prediction server
    • Ceroni A, Passerini A, Vullo A, Frasconi P (2006). DISULFIND: A disulfide bonding state and cysteine connectivity prediction server. Nucleic Acids Res. 34: W177-181.
    • (2006) Nucleic Acids Res. , vol.34
    • Ceroni, A.1    Passerini, A.2    Vullo, A.3    Frasconi, P.4
  • 3
  • 6
    • 23144437891 scopus 로고    scopus 로고
    • DiANNA: A web server for disulfide connectivity prediction
    • Ferre F, Clote P (2005). DiANNA: A web server for disulfide connectivity prediction. Nucleic Acids Res. 33: W230-232.
    • (2005) Nucleic Acids Res , vol.33
    • Ferre, F.1    Clote, P.2
  • 7
    • 33748878164 scopus 로고    scopus 로고
    • Methods for predicting bacterial protein subcellular localization
    • Gardy JL, Brinkman FS (2006). Methods for predicting bacterial protein subcellular localization. Nat. Rev. Microbiol. 4: 741-751.
    • (2006) Nat. Rev. Microbiol. , vol.4 , pp. 741-751
    • Gardy, J.L.1    Brinkman, F.S.2
  • 8
    • 33750957457 scopus 로고    scopus 로고
    • Bacteriocin diversity and the frequency of multiple bacteriocin production in Escherichia coli
    • Gordon DM, O'Brien CL (2006). Bacteriocin diversity and the frequency of multiple bacteriocin production in Escherichia coli. Microbiology, 152: 3239-3244.
    • (2006) Microbiology , vol.152 , pp. 3239-3244
    • Gordon, D.M.1    O'Brien, C.L.2
  • 9
    • 0000620353 scopus 로고
    • Sur un remarquable example d'antagonisme entre deux souches de colibacille
    • Gratia A (1925). Sur un remarquable example d'antagonisme entre deux souches de colibacille. Compt. Rend. Soc. Biol. 93: 1040-1042.
    • (1925) Compt. Rend. Soc. Biol. , vol.93 , pp. 1040-1042
    • Gratia, A.1
  • 10
    • 33645124655 scopus 로고    scopus 로고
    • A novel bacteriocin, thuricin 17, produced by plant growth promoting rhizobacteria strain Bacillus thuringiensis NEB17: Isolation and classification
    • Gray EJ, Lee KD, Souleimanov AM, Di Falco MR, Zhou X, Ly A, Charles TC, Driscoll BT, Smith DL (2006). A novel bacteriocin, thuricin 17, produced by plant growth promoting rhizobacteria strain Bacillus thuringiensis NEB17: Isolation and classification. J. Appl. Microbiol. 100: 545-554.
    • (2006) J. Appl. Microbiol. , vol.100 , pp. 545-554
    • Gray, E.J.1    Lee, K.D.2    Souleimanov, A.M.3    di Falco, M.R.4    Zhou, X.5    Ly, A.6    Charles, T.C.7    Driscoll, B.T.8    Smith, D.L.9
  • 11
    • 0030034468 scopus 로고    scopus 로고
    • Cell-to-cell signaling in the symbiotic nitrogen-fixing bacterium Rhizobium leguminosarum: Autoinduction of a stationary phase and rhizosphere-expressed genes
    • Gray KM, Pearson JP, Downie JA, Boboye BE, Greenberg EP (1996). Cell-to-cell signaling in the symbiotic nitrogen-fixing bacterium Rhizobium leguminosarum: Autoinduction of a stationary phase and rhizosphere-expressed genes. J. Bacteriol. 178: 372-376.
    • (1996) J. Bacteriol. , vol.178 , pp. 372-376
    • Gray, K.M.1    Pearson, J.P.2    Downie, J.A.3    Boboye, B.E.4    Greenberg, E.P.5
  • 12
    • 23044465694 scopus 로고    scopus 로고
    • Symbiotic effectiveness and bacteriocin production by Rhizobium leguminosarum bv. viciae isolated from agriculture soils in Faisalabad
    • Hafeez FY, Naeem FI, Naeem R, Zaidi AH, Malik KA (2005). Symbiotic effectiveness and bacteriocin production by Rhizobium leguminosarum bv. viciae isolated from agriculture soils in Faisalabad Environ. Exp. Bot. 54: 142-147.
    • (2005) Environ. Exp. Bot. , vol.54 , pp. 142-147
    • Hafeez, F.Y.1    Naeem, F.I.2    Naeem, R.3    Zaidi, A.H.4    Malik, K.A.5
  • 13
    • 0027199706 scopus 로고
    • Genetics of bacteriocins produced by lactic acid bacteria
    • Klaenhammer TR (1993). Genetics of bacteriocins produced by lactic acid bacteria. FEMS Microbiol Rev. 12: 39-85.
    • (1993) FEMS Microbiol Rev , vol.12 , pp. 39-85
    • Klaenhammer, T.R.1
  • 15
  • 16
    • 0015259702 scopus 로고
    • Isolation and characterization of a bacteriophage tail-like bacteriocin from a strain of Rhizobium
    • Lotz W, Mayer F (1972). Isolation and characterization of a bacteriophage tail-like bacteriocin from a strain of Rhizobium. J. Virol. 9: 160-173.
    • (1972) J. Virol. , vol.9 , pp. 160-173
    • Lotz, W.1    Mayer, F.2
  • 17
    • 0034044314 scopus 로고    scopus 로고
    • The PSIPRED protein structure prediction server
    • McGuffin LJ, Bryson K, Jones DT (2000). The PSIPRED protein structure prediction server. Bioinformatics, 16: 404-405.
    • (2000) Bioinformatics , vol.16 , pp. 404-405
    • McGuffin, L.J.1    Bryson, K.2    Jones, D.T.3
  • 20
    • 0032975053 scopus 로고    scopus 로고
    • Cloning and characterization of a Rhizobium leguminosarum gene encoding a bacteriocin with similarities to RTX toxins
    • Oresnik IJ, Twelker S, Hynes MF (1999). Cloning and characterization of a Rhizobium leguminosarum gene encoding a bacteriocin with similarities to RTX toxins. Appl Environ Microbiol. 65: 2833-2840.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 2833-2840
    • Oresnik, I.J.1    Twelker, S.2    Hynes, M.F.3
  • 22
    • 0032425481 scopus 로고    scopus 로고
    • Molecular mechanisms of bacteriocin evolution
    • Riley MA (1998). Molecular mechanisms of bacteriocin evolution. Annu. Rev. Genet. 32: 255-278.
    • (1998) Annu. Rev. Genet. , vol.32 , pp. 255-278
    • Riley, M.A.1
  • 23
    • 0036589206 scopus 로고    scopus 로고
    • Bacteriocin diversity: Ecological and evolutionary perspectives
    • Riley MA, Wertz JE (2002a). Bacteriocin diversity: Ecological and evolutionary perspectives. Biochimie, 84: 357-364.
    • (2002) Biochimie , vol.84 , pp. 357-364
    • Riley, M.A.1    Wertz, J.E.2
  • 24
    • 0036406590 scopus 로고    scopus 로고
    • Bacteriocins: Evolution, ecology, and application
    • Riley MA, Wertz JE (2002b). Bacteriocins: Evolution, ecology, and application. Annu. Rev. Microbiol. 56: 117-137.
    • (2002) Annu. Rev. Microbiol. , vol.56 , pp. 117-137
    • Riley, M.A.1    Wertz, J.E.2
  • 25
    • 77954065271 scopus 로고    scopus 로고
    • I-TASSER: A unified platform for automated protein structure and function prediction
    • Roy A, Kucukural A, Zhang Y (2010). I-TASSER: A unified platform for automated protein structure and function prediction. Nat. Protoc. 5: 725-738.
    • (2010) Nat. Protoc. , vol.5 , pp. 725-738
    • Roy, A.1    Kucukural, A.2    Zhang, Y.3
  • 26
    • 0031782954 scopus 로고    scopus 로고
    • Lantibiotics: Biosynthesis and biological activities of uniquely modified peptides from gram-positive bacteria
    • Sahl HG, Bierbaum G (1998). Lantibiotics: Biosynthesis and biological activities of uniquely modified peptides from gram-positive bacteria. Annu. Rev. Microbiol. 52: 41-79.
    • (1998) Annu. Rev. Microbiol. , vol.52 , pp. 41-79
    • Sahl, H.G.1    Bierbaum, G.2
  • 27
    • 0030071672 scopus 로고    scopus 로고
    • Bacteriocin small of Rhizobium leguminosarum belongs to the class of N-acyl-L-homoserine lactone molecules, known as autoinducers and as quorum sensing cotranscription factors
    • Schripsema J, de Rudder KE, van Vliet TB, Lankhorst PP, de Vroom E, Kijne JW, van Brussel AA (1996). Bacteriocin small of Rhizobium leguminosarum belongs to the class of N-acyl-L-homoserine lactone molecules, known as autoinducers and as quorum sensing cotranscription factors. J. Bacteriol. 178: 366-371.
    • (1996) J. Bacteriol. , vol.178 , pp. 366-371
    • Schripsema, J.1    de Rudder, K.E.2    van Vliet, T.B.3    Lankhorst, P.P.4    de Vroom, E.5    Kijne, J.W.6    van Brussel, A.A.7
  • 29
    • 0026707720 scopus 로고
    • Molecular mechanisms of attachment of Rhizobium bacteria to plant roots
    • Smit G, Swart S, Lugtenberg BJ, Kijne JW (1992). Molecular mechanisms of attachment of Rhizobium bacteria to plant roots. Mol. Microbiol. 6: 2897-2903.
    • (1992) Mol. Microbiol. , vol.6 , pp. 2897-2903
    • Smit, G.1    Swart, S.2    Lugtenberg, B.J.3    Kijne, J.W.4
  • 30
    • 0026616329 scopus 로고
    • Genetics of competition for nodulation of legumes
    • Triplett EW, Sadowsky MJ (1992). Genetics of competition for nodulation of legumes. Annu. Rev. Microbiol. 46: 399-428.
    • (1992) Annu. Rev. Microbiol. , vol.46 , pp. 399-428
    • Triplett, E.W.1    Sadowsky, M.J.2
  • 31
    • 0021812069 scopus 로고
    • Bacteriocin small of fast-growing rhizobia is chloroform soluble and is not required for effective nodulation
    • van Brussel AA, Zaat SA, Wijffelman CA, Pees E, Lugtenberg BJ (1985). Bacteriocin small of fast-growing rhizobia is chloroform soluble and is not required for effective nodulation. J. Bacteriol. 162: 1079-1082.
    • (1985) J. Bacteriol. , vol.162 , pp. 1079-1082
    • van Brussel, A.A.1    Zaat, S.A.2    Wijffelman, C.A.3    Pees, E.4    Lugtenberg, B.J.5
  • 32
    • 25444491937 scopus 로고    scopus 로고
    • Protein subcellular localization prediction for Gram-negative bacteria using amino acid subalphabets and a combination of multiple support vector machines
    • Wang J, Sung WK, Krishnan A, Li KB (2005). Protein subcellular localization prediction for Gram-negative bacteria using amino acid subalphabets and a combination of multiple support vector machines. BMC Bioinformatics, 6: p. 174.
    • (2005) BMC Bioinformatics , vol.6 , pp. 174
    • Wang, J.1    Sung, W.K.2    Krishnan, A.3    Li, K.B.4
  • 34
    • 46449132707 scopus 로고    scopus 로고
    • Specific interactions for ab initio folding of protein terminal regions with secondary structures
    • Yang Y, Zhou Y (2008). Specific interactions for ab initio folding of protein terminal regions with secondary structures. Proteins, 72: 793-803.
    • (2008) Proteins , vol.72 , pp. 793-803
    • Yang, Y.1    Zhou, Y.2
  • 36
    • 77954199597 scopus 로고    scopus 로고
    • PSORTb 3.0: Improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
    • Yu NY, Wagner JR, Laird MR, Melli G, Rey S, Lo R, Dao P, Sahinalp SC, Ester M, Foster LJ, Brinkman FS (2010). PSORTb 3.0: Improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes. Bioinformatics, 26: 1608-1615.
    • (2010) Bioinformatics , vol.26 , pp. 1608-1615
    • Yu, N.Y.1    Wagner, J.R.2    Laird, M.R.3    Melli, G.4    Rey, S.5    Lo, R.6    Dao, P.7    Sahinalp, S.C.8    Ester, M.9    Foster, L.J.10    Brinkman, F.S.11


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.