-
1
-
-
0000673494
-
Reconstructing the shape of a tree from observed dissimilarity data
-
H.-J. BANDELT AND A. DRESS, Reconstructing the shape of a tree from observed dissimilarity data, Adv. in Appl. Math., 7 (1986), pp. 309-343.
-
(1986)
Adv. in Appl. Math.
, vol.7
, pp. 309-343
-
-
Bandelt, H.-J.1
Dress, A.2
-
2
-
-
84972510219
-
Statistical analysis of hominoid molecular evolution
-
with comments by Stephen Portnoy and Joseph Felsenstein and a reply by the authors
-
D. BARRY AND J. A. HARTIGAN, Statistical analysis of hominoid molecular evolution, Statist. Sci., 2 (1987), pp. 191-210, with comments by Stephen Portnoy and Joseph Felsenstein and a reply by the authors.
-
(1987)
Statist. Sci.
, vol.2
, pp. 191-210
-
-
Barry, D.1
Hartigan, J.A.2
-
3
-
-
0002074731
-
The recovery of trees from measures of dissimilarity
-
Edinburgh University Press, Edinburgh, Scotland
-
P. BUNEMAN, The recovery of trees from measures of dissimilarity, in Mathematics in the Archae-logical and Historical Sciences, Edinburgh University Press, Edinburgh, Scotland, 1971, pp. 187-395.
-
(1971)
Mathematics in the Archae-logical and Historical Sciences
, pp. 187-395
-
-
Buneman, P.1
-
4
-
-
33644700003
-
Toward automatic reconstruction of a highly resolved tree of life
-
DOI 10.1126/science.1123061
-
F. D. CICCARELLI, T. DOERKS, C. VON MERING, C. J. CREEVEY, B. SNEL, AND P. BORK, Toward automatic reconstruction of a highly resolved tree of life, Science, 311 (2006), pp. 1283-1287. (Pubitemid 43334717)
-
(2006)
Science
, vol.311
, Issue.5765
, pp. 1283-1287
-
-
Ciccarelli, F.D.1
Doerks, T.2
Von Mering, C.3
Creevey, C.J.4
Snel, B.5
Bork, P.6
-
5
-
-
0030588055
-
Full reconstruction of Markov models on evolutionary trees: Identifiability and consistency
-
DOI 10.1016/S0025-5564(96)00075-2
-
J. T. CHANG, Full reconstruction of Markov models on evolutionary trees: Identifiability and consistency, Math. Biosci., 137 (1996), pp. 51-73. (Pubitemid 26307662)
-
(1996)
Mathematical Biosciences
, vol.137
, Issue.1
, pp. 51-73
-
-
Chang, J.T.1
-
6
-
-
0036214723
-
Provably fast and accurate recovery of evolutionary trees through harmonic greedy triplets
-
PII S009753970037905X
-
M. CSURÖS AND M.-Y. KAO, Provably fast and accurate recovery of evolutionary trees through harmonic greedy triplets, SIAM J. Comput., 31 (2001), pp. 306-322. (Pubitemid 33779792)
-
(2001)
SIAM Journal on Computing
, vol.31
, Issue.1
, pp. 306-322
-
-
Csuros, M.1
Kao, M.-Y.2
-
7
-
-
0036108575
-
Fast recovery of evolutionary trees with thousands of nodes
-
DOI 10.1089/10665270252935467
-
M. CSURÖS, Fast recovery of evolutionary trees with thousands of nodes, J. Comput. Biol., 9 (2002), pp. 277-297. (Pubitemid 34548265)
-
(2002)
Journal of Computational Biology
, vol.9
, Issue.2
, pp. 277-297
-
-
Csuros, M.1
-
8
-
-
33845335476
-
Finding a maximum likelihood tree is hard
-
DOI 10.1145/1183907.1183909
-
B. CHOR AND T. TULLER, Finding a maximum likelihood tree is hard, J. ACM, 53 (2006), pp. 722-744. (Pubitemid 44879347)
-
(2006)
Journal of the ACM
, vol.53
, Issue.5
, pp. 722-744
-
-
Chor, B.1
Tuller, T.2
-
9
-
-
0023079987
-
Computational complexity of inferring phylogenies from dissimilarity matrices
-
W. H. E. DAY, Computational complexity of inferring phylogenies from dissimilarity matrices, Bull. Math. Biol., 49 (1987), pp. 461-467.
-
(1987)
Bull. Math. Biol.
, vol.49
, pp. 461-467
-
-
Day, W.H.E.1
-
10
-
-
33745775198
-
Maximal accurate forests from distance matrices
-
Springer, Berlin
-
C. DASKALAKIS, C. HILL, A. JAFFE, R. MIHAESCU, E. MOSSEL, AND S. RAO, Maximal accurate forests from distance matrices, in Research in Computational Molecular Biology, Lecture Notes in Comput. Sci. 3909, Springer, Berlin, 2009.
-
(2009)
Research in Computational Molecular Biology, Lecture Notes in Comput. Sci.
, vol.3909
-
-
Daskalakis, C.1
Hill, C.2
Jaffe, A.3
Mihaescu, R.4
Mossel, E.5
Rao, S.6
-
11
-
-
77949360857
-
Evolutionary trees and the ising model on the bethe lattice: A proof of steel's conjecture
-
only online at
-
C. DASKALAKIS, E. MOSSEL, AND S. ROCH, Evolutionary trees and the Ising model on the Bethe lattice: A proof of Steel's conjecture, Probab. Theory Related Fields, 2009; available only online at http://www.springerlink.com/ content/k76630287587433x/fulltext.pdf.
-
(2009)
Probab. Theory Related Fields
-
-
Daskalakis, C.1
Mossel, E.2
Roch, S.3
-
12
-
-
67650451289
-
Phylogenies without branch bounds: Contracting the short, pruning the deep
-
Springer, Berlin
-
C. DASKALAKIS, E. MOSSEL, AND S. ROCH, Phylogenies without branch bounds: Contracting the short, pruning the deep, in Research in Computational Molecular Biology, Lecture Notes in Comput. Sci. 5541, Springer, Berlin, 2009, pp. 451-465.
-
(2009)
Research in Computational Molecular Biology, Lecture Notes in Comput. Sci.
, vol.5541
, pp. 451-465
-
-
Daskalakis, C.1
Mossel, E.2
Roch, S.3
-
13
-
-
0004485904
-
Computational complexity of inferring phylogenies by compatibility
-
W. H. E. DAY AND D. SANKOFF, Computational complexity of inferring phylogenies by compatibility, Syst. Zool., 35 (1986), pp. 224-229.
-
(1986)
Syst. Zool.
, vol.35
, pp. 224-229
-
-
Day, W.H.E.1
Sankoff, D.2
-
14
-
-
0033480324
-
A few logs suffice to build (almost) all trees (Part 1)
-
P. L. ERDÖS, M. A. STEEL, L. A. SZÉKELY, AND T. A. WARNOW, A few logs suffice to build (almost) all trees (Part 1), Random Structures Algorithms, 14 (1999), pp. 153-184.
-
(1999)
Random Structures Algorithms
, vol.14
, pp. 153-184
-
-
Erdös, P.L.1
Steel, M.A.2
Székely, L.A.3
Warnow, T.A.4
-
15
-
-
0001860411
-
A few logs suffice to build (almost) all trees: Part II
-
PII S0304397599000286
-
P. L. ERDÖS, M. A. STEEL, L. A. SZÉKELY, AND T. A. WARNOW, A few logs suffice to build (almost) all trees (Part 2), Theoret. Comput. Sci., 221 (1999), pp. 77-118. (Pubitemid 129608962)
-
(1999)
Theoretical Computer Science
, vol.221
, Issue.1-2
, pp. 77-118
-
-
Erdos, P.L.1
Steel, M.A.2
Szekely, L.A.3
Warnow, T.J.4
-
16
-
-
84959798530
-
Cases in which parsimony or compatibility methods will be positively misleading
-
J. FELSENSTEIN, Cases in which parsimony or compatibility methods will be positively misleading, Syst. Biol., 27 (1978), pp. 401-410.
-
(1978)
Syst. Biol.
, vol.27
, pp. 401-410
-
-
Felsenstein, J.1
-
18
-
-
0020308198
-
Unlikelihood that minimal phylogenies for a realistic biological study can be constructed in reasonable computational time
-
DOI 10.1016/0025-5564(82)90125-0
-
R. L. GRAHAM AND L. R. FOULDS, Unlikelihood that minimal phylogenies for a realistic biological study can be constructed in reasonable computational time, Math. Biosci., 60 (1982), pp. 133-142. (Pubitemid 13089258)
-
(1982)
Mathematical Biosciences
, vol.60
, Issue.2
, pp. 133-142
-
-
Graham, R.L.1
Foulds, L.R.2
-
19
-
-
58449096222
-
Fast and reliable reconstruction of phylogenetic trees with very short edges
-
SIAM, Philadelphia
-
I. GRONAU, S. MORAN, AND S. SNIR, Fast and reliable reconstruction of phylogenetic trees with very short edges, in Proceedings of the 19th Annual ACM-SIAM Symposium on Discrete Algorithms, SIAM, Philadelphia, 2008, pp. 379-388.
-
(2008)
Proceedings of the 19th Annual ACM-SIAM Symposium on Discrete Algorithms
, pp. 379-388
-
-
Gronau, I.1
Moran, S.2
Snir, S.3
-
20
-
-
0032746022
-
Disk-covering, a fast-converging method for phylogenetic tree reconstruction
-
D. H. HUSON, S. H. NETTLES, AND T. J. WARNOW, Disk-covering, a fast-converging method for phylogenetic tree reconstruction, J. Comput. Biol., 6 (1999), pp. 369-386.
-
(1999)
J. Comput. Biol.
, vol.6
, pp. 369-386
-
-
Huson, D.H.1
Nettles, S.H.2
Warnow, T.J.3
-
21
-
-
0038077526
-
On the complexity of distance-based evolutionary tree reconstruction
-
SIAM, Philadelphia
-
V. KING, L. ZHANG, AND Y. ZHOU, On the complexity of distance-based evolutionary tree reconstruction, in Proceedings of the 14th Annual ACM-SIAM Symposium on Discrete Algorithms, SIAM, Philadelphia, 2003, pp. 444-453.
-
(2003)
Proceedings of the 14th Annual ACM-SIAM Symposium on Discrete Algorithms
, pp. 444-453
-
-
King, V.1
Zhang, L.2
Zhou, Y.3
-
22
-
-
0028181246
-
Reconstructing evolutionary trees from DNA and protein sequences: Paralinear distances
-
J. A. LAKE, Reconstructing Evolutionary Trees from DNA and Protein Sequences: Paralinear Distances, Proc. Natl. Acad. Sci. USA, 91 (1994), pp. 1455-1459.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 1455-1459
-
-
Lake, J.A.1
-
23
-
-
32044432604
-
A signal-to-noise analysis of phylogeny estimation by neighbor-joining: Insufficiency of polynomial length sequences
-
DOI 10.1016/j.mbs.2005.11.003, PII S0025556405002063
-
M. R. LACEY AND J. T. CHANG, A signal-to-noise analysis of phylogeny estimation by neighbor-joining: Insufficiency of polynomial length sequences, Math. Biosci., 199 (2006), pp. 188-215. (Pubitemid 43197780)
-
(2006)
Mathematical Biosciences
, vol.199
, Issue.2
, pp. 188-215
-
-
Lacey, M.R.1
Chang, J.T.2
-
24
-
-
0028361182
-
Recovering evolutionary trees under a more realistic model of sequence evolution
-
P. J. LOCKHART, M. A. STEEL, M. D. HENDY, AND D. PENNY, Recovering evolutionary trees under a more realistic model of sequence, Mol. Biol. Evol., 11 (1994), pp. 605-612. (Pubitemid 24198536)
-
(1994)
Molecular Biology and Evolution
, vol.11
, Issue.4
, pp. 605-612
-
-
Lockhart, P.J.1
Steel, M.A.2
Hendy, M.D.3
Penny, D.4
-
25
-
-
0008192343
-
A manual method for character compatibility analysis
-
C. A. MEACHAM, A manual method for character compatibility analysis, Taxon, 30 (1981), pp. 591-600.
-
(1981)
Taxon
, vol.30
, pp. 591-600
-
-
Meacham, C.A.1
-
28
-
-
33746918412
-
Learning nonsingular phylogenies and hidden Markov models
-
DOI 10.1214/105051606000000024
-
E. MOSSEL AND S. ROCH, Learning nonsingular phylogenies and hidden Markov models, Ann. Appl. Probab., 16 (2006), pp. 583-614. (Pubitemid 44196526)
-
(2006)
Annals of Applied Probability
, vol.16
, Issue.2
, pp. 583-614
-
-
Mossel, E.1
Roch, S.2
-
30
-
-
33144459988
-
A short proof that phylogenetic tree reconstruction by maximum likelihood is hard
-
DOI 10.1109/TCBB.2006.4
-
S. ROCH, A short proof that phylogenetic tree reconstruction by maximum likelihood is hard, IEEE/ACM Trans. Comput. Biol. Bioinform., 3 (2006), pp. 92-94. (Pubitemid 43269830)
-
(2006)
IEEE/ACM Transactions on Computational Biology and Bioinformatics
, vol.3
, Issue.1
, pp. 92-94
-
-
Roch, S.1
-
31
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phyloge-netic trees
-
N. SAITOU AND M. NEI, The neighbor-joining method: A new method for reconstructing phyloge-netic trees, Mol. Biol. Evol., 4 (1987), pp. 406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
32
-
-
0011469880
-
Inverting random functions
-
M. A. STEEL AND L. A. SZÉKELY, Inverting random functions, Ann. Comb., 3 (1999), pp. 103-113.
-
(1999)
Ann. Comb.
, vol.3
, pp. 103-113
-
-
Steel, M.A.1
Székely, L.A.2
-
33
-
-
0036662360
-
Inverting random functions II: Explicit bounds for discrete maximum likelihood estimation, with applications
-
DOI 10.1137/S089548010138790X, PII S089548010138790X
-
M. A. STEEL AND L. A. SZÉKELY, Inverting random functions. II. Explicit bounds for discrete maximum likelihood estimation, with applications, SIAM J. Discrete Math., 15 (2002), pp. 562-575. (Pubitemid 35355426)
-
(2002)
SIAM Journal on Discrete Mathematics
, vol.15
, Issue.4
, pp. 562-575
-
-
Steel, M.A.1
Szekely, L.A.2
-
34
-
-
33745627222
-
Phylogenetics
-
Oxford University Press, Oxford, UK
-
C. SEMPLE AND M. STEEL, Phylogenetics, Math. Appl. (Oxford) 22, Oxford University Press, Oxford, UK, 2003.
-
(2003)
Math. Appl. (Oxford)
, vol.22
-
-
Semple, C.1
Steel, M.2
-
35
-
-
43949153645
-
Recovering a tree from the leaf colourations it generates under a Markov model
-
M. STEEL, Recovering a tree from the leaf colourations it generates under a Markov model, Appl. Math. Lett., 7 (1994), pp. 19-23.
-
(1994)
Appl. Math. Lett.
, vol.7
, pp. 19-23
-
-
Steel, M.1
|