-
1
-
-
4043184290
-
Ancestral maximum likelihood of evolutionary trees is hard
-
ADDARIO-BERRY, L., CHOR, B., HALLETT, M., LAGERGREN, J., PANCONESI, A., AND WAREHAM, T. 2004. Ancestral maximum likelihood of evolutionary trees is hard. J. Bioinf. Comput. Biol. 2, 2, 257-271.
-
(2004)
J. Bioinf. Comput. Biol.
, vol.2
, Issue.2
, pp. 257-271
-
-
Addario-Berry, L.1
Chor, B.2
Hallett, M.3
Lagergren, J.4
Panconesi, A.5
Wareham, T.6
-
3
-
-
0033795444
-
Multiple maxima of likelihood in phylogenetic trees: An analytic approach
-
CHOR, B., HENDY, M. D., HOLLAND, B. R., AND PENNY, D. 2000. Multiple maxima of likelihood in phylogenetic trees: An analytic approach. Mol. Biol. Evol. 17, 10, 1529-1541.
-
(2000)
Mol. Biol. Evol.
, vol.17
, Issue.10
, pp. 1529-1541
-
-
Chor, B.1
Hendy, M.D.2
Holland, B.R.3
Penny, D.4
-
4
-
-
29144484019
-
Maximum likelihood of evolutionary trees: Hardness and approximation
-
CHOR B. AND TULLER, T. 2005. Maximum likelihood of evolutionary trees: Hardness and approximation. Bioinformatics 21, 1, i97-i106.
-
(2005)
Bioinformatics
, vol.21
, Issue.1
-
-
Chor, B.1
Tuller, T.2
-
5
-
-
0023079987
-
The computational complexity of inferring phylogenies from dissimilarity matrix
-
DAY, W. 1987. The computational complexity of inferring phylogenies from dissimilarity matrix. Bull. Math. Biol. 49, 4, 461-467.
-
(1987)
Bull. Math. Biol.
, vol.49
, Issue.4
, pp. 461-467
-
-
Day, W.1
-
6
-
-
0003088855
-
The computational complexity of inferring rooted phylogenies by parsimony
-
DAY, W., JOHNSON, D., AND SANKOFF, D. 1986. The computational complexity of inferring rooted phylogenies by parsimony. Mathematical Biosciences 81, 33-42.
-
(1986)
Mathematical Biosciences
, vol.81
, pp. 33-42
-
-
Day, W.1
Johnson, D.2
Sankoff, D.3
-
7
-
-
0004485904
-
The computational complexity of inferring phylogenies by compatibility
-
DAY W., AND SANKOFF, D. 1986. The computational complexity of inferring phylogenies by compatibility. Syst. Zool. 35, 2, 224-229.
-
(1986)
Syst. Zool.
, vol.35
, Issue.2
, pp. 224-229
-
-
Day, W.1
Sankoff, D.2
-
8
-
-
29844440416
-
On the importance of being biased (1.36 hardness of approximating vertex-cover)
-
DINUR I., AND SAFRA, S. 2005. On the importance of being biased (1.36 hardness of approximating vertex-cover). Ann. Math. 162, 439-485.
-
(2005)
Ann. Math.
, vol.162
, pp. 439-485
-
-
Dinur, I.1
Safra, S.2
-
9
-
-
0004128472
-
-
Cambridge University Press, Cambridge, UK
-
EDWARDS, A. W. F. 1972. Likelihood. Cambridge University Press, Cambridge, UK.
-
(1972)
Likelihood
-
-
Edwards, A.W.F.1
-
10
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
FELSENSTEIN, J. 1981. Evolutionary trees from DNA sequences: A maximum likelihood approach. J. Mol. Evol. 77, 368-376.
-
(1981)
J. Mol. Evol.
, vol.77
, pp. 368-376
-
-
Felsenstein, J.1
-
11
-
-
0029901637
-
Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods
-
FELSENSTEIN, J. 1996. Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods. Meth. Enzym. 266, 419-427.
-
(1996)
Meth. Enzym.
, vol.266
, pp. 419-427
-
-
Felsenstein, J.1
-
13
-
-
84959747425
-
Toward defining the course of evolution: Minimum change for specified tree topology
-
FITCH, W. M. 1971. Toward defining the course of evolution: Minimum change for specified tree topology. Syst. Zool. 20, 406-416.
-
(1971)
Syst. Zool.
, vol.20
, pp. 406-416
-
-
Fitch, W.M.1
-
14
-
-
0003081588
-
The Steiner problem in phylogeny is NP-complete
-
FOULDS, L., AND GRAHAM, R. 1982. The Steiner problem in phylogeny is NP-complete. Adv. Appl. Math. 3, 43-49.
-
(1982)
Adv. Appl. Math.
, vol.3
, pp. 43-49
-
-
Foulds, L.1
Graham, R.2
-
15
-
-
0000844603
-
Some optimal inapproximability results
-
HASTAD, J. 2001. Some optimal inapproximability results. J. ACM 48, 798-859.
-
(2001)
J. ACM
, vol.48
, pp. 798-859
-
-
Hastad, J.1
-
16
-
-
0000732090
-
Evolution of protein molecules
-
H. N. Munro, Ed. Academic Press, New York
-
JUKES, T. H. AND CANTOR, C. R. 1969. Evolution of protein molecules. In Mammalian Protein Metabolism. H. N. Munro, Ed. Academic Press, New York, pp. 21-132.
-
(1969)
Mammalian Protein Metabolism
, pp. 21-132
-
-
Jukes, T.H.1
Cantor, C.R.2
-
18
-
-
0029881442
-
Probabilistic reconstruction of ancestral nucleotide and amino acid sequences
-
KOSHI, M., AND GOLDSTEIN, R. 1996. Probabilistic reconstruction of ancestral nucleotide and amino acid sequences. J. Molec. Evol. 42, 313-320.
-
(1996)
J. Molec. Evol.
, vol.42
, pp. 313-320
-
-
Koshi, M.1
Goldstein, R.2
-
19
-
-
0001879933
-
Molecular studies of evolution: A source of novel statistical problems
-
S. Gupta and Y. Jackel, Eds. Academic Press, New York
-
NEYMAN, J. 1971. Molecular studies of evolution: A source of novel statistical problems. In Statistical Decision Theory and Related Topics, S. Gupta and Y. Jackel, Eds. Academic Press, New York, pp. 1-27.
-
(1971)
Statistical Decision Theory and Related Topics
, pp. 1-27
-
-
Neyman, J.1
-
20
-
-
33144459988
-
A short proof that phylogenetic tree reconstruction by maximum likelihood is hard
-
accepted
-
ROCH, S. 2006. A short proof that phylogenetic tree reconstruction by maximum likelihood is hard. IEEE/ACM Trans. Comput. Biol. Bioinformat. 3, 1, 92-94. accepted.
-
(2006)
IEEE/ACM Trans. Comput. Biol. Bioinformat.
, vol.3
, Issue.1
, pp. 92-94
-
-
Roch, S.1
-
21
-
-
52449147252
-
The complexity of reconstructing trees from qualitative characters and subtrees
-
STEEL, M. 1992. The complexity of reconstructing trees from qualitative characters and subtrees. J. Classif. 9, 71-90.
-
(1992)
J. Classif.
, vol.9
, pp. 71-90
-
-
Steel, M.1
-
22
-
-
12044253706
-
The maximum likelihood point for a phlogenetic tree is not unique
-
STEEL, M. 1994. The maximum likelihood point for a phlogenetic tree is not unique. Syst. Biol., 43, 560-564,
-
(1994)
Syst. Biol.
, vol.43
, pp. 560-564
-
-
Steel, M.1
-
23
-
-
0034035066
-
Parsimony, likelihood and the role of models in molecular phylogenetics
-
STEEL, M., AND PENNY, D. 2000. Parsimony, likelihood and the role of models in molecular phylogenetics. Mol. Biol. Evol. 17, 839-850.
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 839-850
-
-
Steel, M.1
Penny, D.2
-
24
-
-
0031149251
-
Link between maximum likelihood and maximum parsimony under a simple model of site substitution
-
TUFFLEY, C., AND STEEL, M. 1997. Link between maximum likelihood and maximum parsimony under a simple model of site substitution. Bull. Math. Biol. 59, 3, 581-607.
-
(1997)
Bull. Math. Biol.
, vol.59
, Issue.3
, pp. 581-607
-
-
Tuffley, C.1
Steel, M.2
-
26
-
-
0028820333
-
A new method of inferring of ancestral nucleotide and amino acid sequences
-
YANG, Z., KUMAR, S., AND NEI, M. 1995. A new method of inferring of ancestral nucleotide and amino acid sequences. Genetics 141, 1641-1650.
-
(1995)
Genetics
, vol.141
, pp. 1641-1650
-
-
Yang, Z.1
Kumar, S.2
Nei, M.3
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