Response of soil microbial communities to different farming systems for upland soybean cultivation

Journal of Applied Biological Chemistry

Volumn 54, Issue 3, 2011, Pages 423-433

  Lee, Young Han ^a   Kim, Hoon ^b  

^a Gyeongsangnam do Agricultural Research and Extension Service   (South Korea)

^b Sunchon National University   (South Korea)

Author keywords

Fatty acid methyl ester; Gram positive bacteria; Microbial community; Organic farming

Indexed keywords

ACTINOBACTERIA; ACTINOBACTERIA (CLASS); ARBUSCULAR; BACTERIA (MICROORGANISMS); FUNGI; GLYCINE MAX; NEGIBACTERIA; POSIBACTERIA; SECALE CEREALE;

EID: 79960474276     PISSN: 19760442     EISSN: None     Source Type: Journal    
DOI: 10.3839/jksabc.2011.066     Document Type: Article

References (52)

1. Allison LE (1965) Organic carbon. In Methods of soil analysis, Black CA et al. (eds.), pp. 1367-1376, ASA Inc., Madison, WI.
2. Altieri MA (2002) Agroecology: The sceience of natural resource managemen for poor farmers in marginal environments. Agric Ecosyst Environ 93, 1-24.
3. Balser T, Treseder KK, and Ekenler M (2005) Using lipid analysis and hyphal length to quantify AM and saprotrophic fungal abundance along a soil chronosequence. Soil Biol Biochem 37, 601-604.
4. Bossio DA and Scow KM (1998) Impacts of carbon and flooding on soil microbial communities: Phospholipid fatty acid profiles and substrate utilization patterns. Microb Ecol 35, 265-278.
5. Bossio DA, Girvan MS, Verchot L, Bullimore J, Borelli T, Albrecht A, Scow KM, Ball AS, Pretty JN, and Osborn AM (2005) Soil microbial community response to land use change in an agricultural landscape of western Kenya. Microbial Ecol 49, 50-62.
6. Bradleya K, Rhae A, Drijberb RA, and Knopsc J (2006) Increased N availability in grassland soils modifies their microbial communities and decreases the abundance of arbuscular mycorrhizal fungi. Soil Biol Biochem 38, 1583-1595.
7. Buyer JS and Drinkwater LE (1997) Comparison of substrate utilization assay and fatty acid analysis of soil microbial communities. J Microbiol Meth 30, 3-11.
8. Cavigelli MA, Robertson GP, and Klug MJ (1995) Fatty acid methyl ester (FAME) profiles as measures of soil microbial community structure. Plant Soil 170, 99-113.
9. Clark MS, Horwath WR, Shennan C, and Scow KM (1998) Changes in soil chemical properties resulting from organic and low-input farming practices. Agron J 90, 662-671.
10. Cobb D, Feber R, Hopkins A, Stockdale L, O'Riordan T, Clements B, Firbank L, Goulding K, Jarvis S, and Macdonald D (1999) Intergrating the environmental and economic consequences of converting to organic agriculture: evidence from a case study. Land Use Policy 16, 207-221.
11. Cycoñ M and Piotrowska-Seget Z (2009) Changes in bacterial diversity and community structure following pesticides addition to soil estimated by cultivation technique. Ecotoxicology 18, 632-642.
12. Douds DD, Galvez L, Janke RR, and Wagoner P (1995) Effect of tillage and farming system upon populations and distribution of vesicular-arbuscular mycorrhizal fungi. Agric Ecosyst Environ 43, 325-335.
13. Drenovsky RE, Vo D, Graham KJ, and Scow KM (2004) Soil water content and organic carbon availability are major determinants of soil microbial community composition. Microb Ecol 48, 424-430.
14. Drinkwater LE, Leturneau DK, Workneh F, Van Bruggen AHC, and Shennan C (1995) Fundamental difference between conventional and organic tomato agroecosystems in California. Ecol Appl 5, 1098-1112.
15. Esperschu{double acute}tz J, Gattinger A, Mäder P, Schloter M, and Flieβbach A (2007) Response of soil microbial biomass and community structures to conventional and organic farming systems under identical crop rotations. FEMS Microbiol Ecol 61, 26-37.
16. Frostegård Å and Bååth E (1996) The use of phospholipid fatty acid analysis to estimate bacterial and fungal biomass in soil. Biol Fertil Soils 22, 59-65.
17. Frostegård Å, Tunlid A, and Bååth E (1993) Phospholipid fatty acid composition, biomass and activity of microbial communities from two soil types experimentally exposed to different heavy metals. Appl Environ Microbiol 59, 3605-3617.
18. Gelsomino CC, Ambrosoli A, Minati R, and Ruggiero P (2004) Functional and molecular responses of soil microbial communities under differing soil management practice. Soil Biol Biochem 36, 1873-1883.
19. Graham JH, Hodge NC, and Morton JB (1995) Fatty acid methyl ester profiles for characterization of glomalean fungi and their endomycorrhizae. Appl Environ Microbiol 61, 58-64.
20. Grogan DW and Cronan JE (1997) Cyclopropane ring formation in membrane lipids of bacteria. Microbiol Mol Biol Rev 61, 429-441.
21. Guckert JB, Hood MA, and White DC (1986) Phospholipid ester-linked fatty acid profile changes during nutrient deprivation of Vibrio cholerae: Increases in cis/trans ratio and proportions of cyclopropyl fatty acid. Appl Environ Microbial 52, 794-801.
22. Haldeman DL, Amy PS, White DC, and Ringelberg DB (1994) Changes in bacteria recoverable from subsurface volcanic rock samples during storage at 4. Appl Environ Microbiol 60, 2697-2703.
23. Hamman ST, Burke IC, and Strombeerger ME (2007) Relationships between microbial community structure and soil environmental conditions in a recently burned system. Soil Biol Biochem 39, 1703-1711.
24. Kieft TL, Wilch E, O'connor K, Ringelberg DB, and White DC (1997) Survival and phospholipid fatty acid profiles of surface and subsurface bacteria in natural sediment microcosms. Appl Environ Microbiol 63, 1531-1542.
25. Li W, Zhan C, Jiang H, Xin G, and Yang Z (2006) Changes in soil microbial community associated with invasion of the exotic weed, Mikania micrantha H.B.K. Plant Soil 281, 309-324.
26. Liu B, Tu C, Hu S, Gumpertz M, and Ristaino JB (2007) Effect of organic, sustainable, and conventional management strategies in grower fields on soil physical, chemical, and biological factors and the incidence of Southern blight. Appl Soil Ecol 37, 202-214.
27. Macalady JL, Fuller ME, and Scow KM (1998) Effects of metam sodium fumigation on soil microbial activity and community structure. J Environ Qual 27, 54-63.
28. Mäder P, Flieâach A, Dubois D, Gunst L, Fried P, and Niggli U (2002) Soil fertility and biodiversity in organic farming. Science 296, 1694-1697.
29. Mechri B, Chehab H, Attia F, Mariem FB, Braham M, and Hammami M (2010) Olive mill wastewater effects on the microbial communities as studied in the field of olive trees by analysis of fatty acid signatures. Eur J Soil Biol 46, 312-318.
30. Meriles JM, Vargas Gil S, Conforto C, Figoni G, Lovera E, March GJ, and Guzmán CA (2009) Soil microbial communities under different soybean cropping systems: Characterization of microbial population dynamics, soil microbial activity, microbial biomass, and fatty acid profiles. Soil Till Res 103, 271-281.
31. 3. Soil Till Res 85, 86-93.
32. Oehl F, Sieverding E, Mader P, Dubois D, Ineichen K, Boller T, and Wiemken A (2004) Impact of long-term conventional and organic farming on the diversity or arbuscular mycorrhizal fungi. Oecologia 138, 574-583.
33. Patra AK, Le Roux X, Grayston SJ, Loiseau P, and Louault F (2008) Unraveling the effects of management regime and plant species on soil organic carbon and microbial phospholipid fatty acid profiles in grassland soils. Bioresource Technol 99, 3545-3551.
34. Pennanen T (2001) Microbial communities in boreal coniferous forest humus exposed to heavy metals and changes in soil pH-a summary of the use of phospholipids fatty acids, Biolog® and 3H-Thymidine incorporation methods in field studies. Geoderma 100, 91-126.
35. Petersen SO, Frohne PS, and Kennedy AC (2002) Dynamics of a soil microbial community under spring wheat. Soil Sci Soc Am J 66, 826-833.
36. Pozo C, Salmeron V, Rodelas B, Martinez-Toledo MV, and Gonzalez-Lopez J (1994) Effects of the herbicide alachlor on soil microbial activities. Ecotocicology 3, 4-10.
37. Reganold JP, Elliott LF, and Unger YL (1987) Long-term effects of organic and conventional farming on soil erosion. Nature 330, 370-372.
38. Rillig MC, Ramsey PW, Morris S, and Paul EA (2003). Glomalin, an arbuscular-mycorrhizal fungal soil protein, responds to land-use change. Plant Soil 253, 293-299.
39. Rillig MC, Wright SF, Nichols KA, Schmidt WF, and Torn MS (2001) Large contribution of arbuscular mycorrhizal fungi to soil carbon pools in tropical forest soils. Plant Soil 233, 167-177.
40. Schutter ME and Dick RP (2000) Comparison of fatty acid methyl ester (FAME) methods for characterizing microbial communities. Soil Sci Soc Am J 64, 1659-1668.
41. Stark C, Condron LM, Stewart A, Di HJ, and O'Callaghan M (2007) Influence of organic and mineral amendments on microbial soil properties and processes. Appl Soil Ecol 35, 79-93.
42. Steenwerth KL, Jackson LE, Calderon FJ, Stromberg MR, and Scow KM (2003) Soil microbial community composition and land use history in cultivated and grassland ecosystems of coastal California. Soil Biol Biochem 35, 489-500.
43. Vargas Gil S, Meriles J, Conforto C, Basanta M, Radl V, Hagn A, Schloter M, and March GJ (2011) Response of soil microbial communities to different management practices in surface soils of a soybean agroecosystem in Argentina. Europ J Soil Biol 47, 55-60.
44. Waldrop MP, Balser TC, and Firestone MK (2000) Linking microbial community composition to function in a tropical soil. Soil Biol Biochem 32, 1837-1846.
45. Wang MC, Liu YH, Wang Q, Gong M, Hua XM, Pang YJ, Hu S, and Yang YH (2008) Impact of methamidophos on the biochemical, catabolic, and genetic characteristics of soil microbial communities. Soil Biol Biochem 40, 778-788.
46. Wohl DL and McArthur JV (2001) Aquatic Actinomycete- Fungal Interactions and Their Effects on Organic Matter Decomposition: A Microcosm Study. Microb Ecol 42, 446-457.
47. Workneh F and van Bruggen AHC (1994) Microbial density, composition, and diversity in organically and conventionally managed rhizosphere soil in relation to supprdssion of corky root of tomatoes. Appl Soil Ecol 1, 219-230.
48. Wright SF and Upadhyaya A (1998) A survey of soils for aggregate stability and glomalin, a glycoprotein produced by hyphae of arbuscular mycorrhizal fungi. Plant Soil 198, 97-107.
49. Wright SF, Franke-Snyder M, Morton JB, and Upadhyaya A (1996) Time-course study and partial characterization of a protein on hyphae of arbuscular mycorrhizal fungi during active colonization of roots. Plant Soil 181, 193-203.
50. Wright SF, Nichols KA, and Schmidt WF (2006) Comparison of efficacy of three extractants to solubilize glomalin on hyphae and in soil. Chemosphere 64, 1219-1224.
51. Wright SF, Starr JL, and Paltineanu IC (1999) Changes in aggregate stability and concentration of glomalin during tillage management transition. Soil Sci Soc Am J 63, 1825-1829.
52. Zelles L (1997) Phospholipid fatty acid profiles in selected members of soil microbial communities. Chemosphere 35, 275-294.