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Volumn 193, Issue 14, 2011, Pages 3446-3452

Comparative genomics of the dormancy regulons in mycobacteria

Author keywords

[No Author keywords available]

Indexed keywords

FERREDOXIN; HEAT SHOCK PROTEIN; NITROREDUCTASE; PHOSPHOTRANSFERASE; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR DOSR; UNCLASSIFIED DRUG; UNIVERSAL STRESS PROTEIN;

EID: 79960388012     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.00179-11     Document Type: Article
Times cited : (43)

References (50)
  • 2
    • 29244443682 scopus 로고    scopus 로고
    • Transcription and autoregulation of the Rv3134c-devR-devS operon of Mycobacterium tuberculosis
    • Bagchi, G., S. Chauhan, D. Sharma, and J. S. Tyagi. 2005. Transcription and autoregulation of the Rv3134c-devR-devS operon of Mycobacterium tuberculosis. Microbiology 151:4045-4053.
    • (2005) Microbiology , vol.151 , pp. 4045-4053
    • Bagchi, G.1    Chauhan, S.2    Sharma, D.3    Tyagi, J.S.4
  • 3
    • 67650588768 scopus 로고    scopus 로고
    • The DosR regulon of M. tuberculosis and antibacterial tolerance
    • Bartek, I. L., et al. 2009. The DosR regulon of M. tuberculosis and antibacterial tolerance. Tuberculosis (Edinburgh) 89:310-316.
    • (2009) Tuberculosis (Edinburgh) , vol.89 , pp. 310-316
    • Bartek, I.L.1
  • 5
    • 77649141318 scopus 로고    scopus 로고
    • Unique flexibility in energy metabolism allows mycobacteria to combat starvation and hypoxia
    • Berney, M., and G. M. Cook. 2010. Unique flexibility in energy metabolism allows mycobacteria to combat starvation and hypoxia. PLoS One 5:e8614.
    • (2010) PLoS One , vol.5
    • Berney, M.1    Cook, G.M.2
  • 7
    • 0036951936 scopus 로고    scopus 로고
    • Mycobacterium bovis BCG response regulator essential for hypoxic dormancy
    • Boon, C., and T. Dick. 2002. Mycobacterium bovis BCG response regulator essential for hypoxic dormancy. J. Bacteriol. 184:6760-6767.
    • (2002) J. Bacteriol. , vol.184 , pp. 6760-6767
    • Boon, C.1    Dick, T.2
  • 8
    • 0035931926 scopus 로고    scopus 로고
    • Massive gene decay in the leprosy bacillus
    • Cole, S. T., et al. 2001. Massive gene decay in the leprosy bacillus. Nature 409:1007-1011.
    • (2001) Nature , vol.409 , pp. 1007-1011
    • Cole, S.T.1
  • 10
    • 3242750587 scopus 로고    scopus 로고
    • Induction of a novel class of diacylglycerol acyltransferases and triacylglycerol accumulation in Mycobacterium tuberculosis as it goes into a dormancy-like state in culture
    • Daniel, J., et al. 2004. Induction of a novel class of diacylglycerol acyltransferases and triacylglycerol accumulation in Mycobacterium tuberculosis as it goes into a dormancy-like state in culture. J. Bacteriol. 186:5017-5030.
    • (2004) J. Bacteriol. , vol.186 , pp. 5017-5030
    • Daniel, J.1
  • 11
    • 75549088819 scopus 로고    scopus 로고
    • MicrobesOnline: an integrated portal for comparative and functional genomics
    • Dehal, P. S., et al. 2010. MicrobesOnline: an integrated portal for comparative and functional genomics. Nucleic Acids Res. 38:D396-D400.
    • (2010) Nucleic Acids Res , vol.38
    • Dehal, P.S.1
  • 12
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: a multiple sequence alignment method with reduced time and space complexity
    • Edgar, R. C. 2004. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinform. 5:113.
    • (2004) BMC Bioinform , vol.5 , pp. 113
    • Edgar, R.C.1
  • 13
    • 0042825331 scopus 로고    scopus 로고
    • A family of acr-coregulated Mycobacterium tuberculosis genes shares a common DNA motif and requires Rv3133c (dosR or devR) for expression
    • Florczyk, M. A., et al. 2003. A family of acr-coregulated Mycobacterium tuberculosis genes shares a common DNA motif and requires Rv3133c (dosR or devR) for expression. Infect. Immun. 71:5332-5343.
    • (2003) Infect. Immun. , vol.71 , pp. 5332-5343
    • Florczyk, M.A.1
  • 14
    • 0347091999 scopus 로고    scopus 로고
    • M. tuberculosis persistence, latency, and drug tolerance
    • Gomez, J. E., and J. D. McKinney. 2004. M. tuberculosis persistence, latency, and drug tolerance. Tuberculosis (Edinburgh) 84:29-44.
    • (2004) Tuberculosis (Edinburgh) , vol.84 , pp. 29-44
    • Gomez, J.E.1    McKinney, J.D.2
  • 15
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon, S., and O. Gascuel. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52:696-704.
    • (2003) Syst. Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 16
    • 0344780881 scopus 로고    scopus 로고
    • Nitrate and nitrite control of respiratory nitrate reduction in denitrifying Pseudomonas stutzeri by a two-component regulatory system homologous to NarXL of Escherichia coli
    • Hartig, E., U. Schiek, K. U. Vollack, and W. G. Zumft. 1999. Nitrate and nitrite control of respiratory nitrate reduction in denitrifying Pseudomonas stutzeri by a two-component regulatory system homologous to NarXL of Escherichia coli. J. Bacteriol. 181:3658-3665.
    • (1999) J. Bacteriol. , vol.181 , pp. 3658-3665
    • Hartig, E.1    Schiek, U.2    Vollack, K.U.3    Zumft, W.G.4
  • 17
    • 78649647277 scopus 로고    scopus 로고
    • DosS responds to a reduced electron transport system to induce the Mycobacterium tuberculosis DosR regulon
    • Honaker, R. W., R. K. Dhiman, P. Narayanasamy, D. C. Crick, and M. I. Voskuil. 2010. DosS responds to a reduced electron transport system to induce the Mycobacterium tuberculosis DosR regulon. J. Bacteriol. 192: 6447-6455.
    • (2010) J. Bacteriol. , vol.192 , pp. 6447-6455
    • Honaker, R.W.1    Dhiman, R.K.2    Narayanasamy, P.3    Crick, D.C.4    Voskuil, M.I.5
  • 18
    • 67651202584 scopus 로고    scopus 로고
    • Unique roles of DosT and DosS in DosR regulon induction and Mycobacterium tuberculosis dormancy
    • Honaker, R. W., R. L. Leistikow, I. L. Bartek, and M. I. Voskuil. 2009. Unique roles of DosT and DosS in DosR regulon induction and Mycobacterium tuberculosis dormancy. Infect. Immun. 77:3258-3263.
    • (2009) Infect. Immun. , vol.77 , pp. 3258-3263
    • Honaker, R.W.1    Leistikow, R.L.2    Bartek, I.L.3    Voskuil, M.I.4
  • 19
    • 46249094753 scopus 로고    scopus 로고
    • Mycobacterium bovis BCG vaccine strains lack narK2 and narX induction and exhibit altered phenotypes during dormancy
    • Honaker, R. W., et al. 2008. Mycobacterium bovis BCG vaccine strains lack narK2 and narX induction and exhibit altered phenotypes during dormancy. Infect. Immun. 76:2587-2593.
    • (2008) Infect. Immun. , vol.76 , pp. 2587-2593
    • Honaker, R.W.1
  • 20
    • 38649092410 scopus 로고    scopus 로고
    • Dendroscope: an interactive viewer for large phylogenetic trees
    • Huson, D. H., et al. 2007. Dendroscope: an interactive viewer for large phylogenetic trees. BMC Bioinform. 8:460.
    • (2007) BMC Bioinform , vol.8 , pp. 460
    • Huson, D.H.1
  • 21
    • 3042713693 scopus 로고    scopus 로고
    • The Mycobacterium tuberculosis dosRS twocomponent system is induced by multiple stresses
    • Kendall, S. L., et al. 2004. The Mycobacterium tuberculosis dosRS twocomponent system is induced by multiple stresses. Tuberculosis (Edinburgh) 84:247-255.
    • (2004) Tuberculosis (Edinburgh) , vol.84 , pp. 247-255
    • Kendall, S.L.1
  • 22
    • 77957327437 scopus 로고    scopus 로고
    • Different roles of DosS and DosT in the hypoxic adaptation of Mycobacteria
    • Kim, M. J., K. J. Park, I. J. Ko, Y. M. Kim, and J. I. Oh. 2010. Different roles of DosS and DosT in the hypoxic adaptation of Mycobacteria. J. Bacteriol. 192:4868-4875.
    • (2010) J. Bacteriol. , vol.192 , pp. 4868-4875
    • Kim, M.J.1    Park, K.J.2    Ko, I.J.3    Kim, Y.M.4    Oh, J.I.5
  • 24
    • 36448991500 scopus 로고    scopus 로고
    • Clustal W and Clustal X version 2.0
    • Larkin, M. A., et al. 2007. Clustal W and Clustal X version 2.0. Bioinformatics 23:2947-2948.
    • (2007) Bioinformatics , vol.23 , pp. 2947-2948
    • Larkin, M.A.1
  • 25
    • 53849141480 scopus 로고    scopus 로고
    • O2-and NO-sensing mechanism through the DevSR two-component system in Mycobacterium smegmatis
    • Lee, J. M., et al. 2008. O2- and NO-sensing mechanism through the DevSR two-component system in Mycobacterium smegmatis. J. Bacteriol. 190:6795-6804.
    • (2008) J. Bacteriol. , vol.190 , pp. 6795-6804
    • Lee, J.M.1
  • 26
    • 0142011067 scopus 로고    scopus 로고
    • Evolution and classification of P-loop kinases and related proteins
    • Leipe, D. D., E. V. Koonin, and L. Aravind. 2003. Evolution and classification of P-loop kinases and related proteins. J. Mol. Biol. 333:781-815.
    • (2003) J. Mol. Biol. , vol.333 , pp. 781-815
    • Leipe, D.D.1    Koonin, E.V.2    Aravind, L.3
  • 27
    • 77956163145 scopus 로고    scopus 로고
    • Biological and structural characterization of the Mycobacterium smegmatis nitroreductase NfnB, and its role in benzothiazinone resistance
    • Manina, G., et al. 2010. Biological and structural characterization of the Mycobacterium smegmatis nitroreductase NfnB, and its role in benzothiazinone resistance. Mol. Microbiol. 77:1172-1185.
    • (2010) Mol. Microbiol. , vol.77 , pp. 1172-1185
    • Manina, G.1
  • 28
    • 0030052038 scopus 로고    scopus 로고
    • Isolation of an oxygen-sensitive FNR protein of Escherichia coli: interaction at activator and repressor sites of FNR-controlled genes
    • Melville, S. B., and R. P. Gunsalus. 1996. Isolation of an oxygen-sensitive FNR protein of Escherichia coli: interaction at activator and repressor sites of FNR-controlled genes. Proc. Natl. Acad. Sci. U. S. A. 93:1226-1231.
    • (1996) Proc. Natl. Acad. Sci. U. S. A. , vol.93 , pp. 1226-1231
    • Melville, S.B.1    Gunsalus, R.P.2
  • 29
    • 0033565546 scopus 로고    scopus 로고
    • Computer analysis of transcription regulatory patterns in completely sequenced bacterial genomes
    • Mironov, A. A., E. V. Koonin, M. A. Roytberg, and M. S. Gelfand. 1999. Computer analysis of transcription regulatory patterns in completely sequenced bacterial genomes. Nucleic Acids Res. 27:2981-2989.
    • (1999) Nucleic Acids Res , vol.27 , pp. 2981-2989
    • Mironov, A.A.1    Koonin, E.V.2    Roytberg, M.A.3    Gelfand, M.S.4
  • 30
    • 0034147960 scopus 로고    scopus 로고
    • Software for analysis of bacterial genomes
    • Mironov, A. A., N. P. Vinokurova, and M. S. Gelfand. 2000. Software for analysis of bacterial genomes. Mol. Biol. 34:222-231.
    • (2000) Mol. Biol. , vol.34 , pp. 222-231
    • Mironov, A.A.1    Vinokurova, N.P.2    Gelfand, M.S.3
  • 31
    • 70349924052 scopus 로고    scopus 로고
    • Function prediction of Rv0079, a hypothetical Mycobacterium tuberculosis DosR regulon protein
    • Mishra, S. 2009. Function prediction of Rv0079, a hypothetical Mycobacterium tuberculosis DosR regulon protein. J. Biomol. Struct. Dyn. 27:283-292.
    • (2009) J. Biomol. Struct. Dyn. , vol.27 , pp. 283-292
    • Mishra, S.1
  • 32
    • 75549086541 scopus 로고    scopus 로고
    • RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes
    • Novichkov, P. S., et al. 2010. RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes. Nucleic Acids Res. 38:D111-D118.
    • (2010) Nucleic Acids Res , vol.38
    • Novichkov, P.S.1
  • 33
    • 0035945257 scopus 로고    scopus 로고
    • Comparative analysis of FUR regulons in gamma-proteobacteria
    • Panina, E. M., A. A. Mironov, and M. S. Gelfand. 2001. Comparative analysis of FUR regulons in gamma-proteobacteria. Nucleic Acids Res. 29:5195-5206.
    • (2001) Nucleic Acids Res , vol.29 , pp. 5195-5206
    • Panina, E.M.1    Mironov, A.A.2    Gelfand, M.S.3
  • 34
    • 0038349268 scopus 로고    scopus 로고
    • Rv3133c/dosR is a transcription factor that mediates the hypoxic response of Mycobacterium tuberculosis
    • Park, H. D., et al. 2003. Rv3133c/dosR is a transcription factor that mediates the hypoxic response of Mycobacterium tuberculosis. Mol. Microbiol. 48: 833-843.
    • (2003) Mol. Microbiol. , vol.48 , pp. 833-843
    • Park, H.D.1
  • 35
    • 31844441997 scopus 로고    scopus 로고
    • Unique transcriptome signature of Mycobacterium tuberculosis in pulmonary tuberculosis
    • Rachman, H., et al. 2006. Unique transcriptome signature of Mycobacterium tuberculosis in pulmonary tuberculosis. Infect. Immun. 74:1233-1242.
    • (2006) Infect. Immun. , vol.74 , pp. 1233-1242
    • Rachman, H.1
  • 36
    • 33847670273 scopus 로고    scopus 로고
    • Comparative genomic analysis of regulation of anaerobic respiration in ten genomes from three families of gamma-proteobacteria (Enterobacteriaceae, Pasteurellaceae, Vibrionaceae)
    • Ravcheev, D. A., A. V. Gerasimova, A. A. Mironov, and M. S. Gelfand. 2007. Comparative genomic analysis of regulation of anaerobic respiration in ten genomes from three families of gamma-proteobacteria (Enterobacteriaceae, Pasteurellaceae, Vibrionaceae). BMC Genomics 8:54.
    • (2007) BMC Genomics , vol.8 , pp. 54
    • Ravcheev, D.A.1    Gerasimova, A.V.2    Mironov, A.A.3    Gelfand, M.S.4
  • 37
    • 33744500236 scopus 로고    scopus 로고
    • Bacillus subtilis Fnr senses oxygen via a [4Fe-4S] cluster coordinated by three cysteine residues without change in the oligomeric state
    • Reents, H., et al. 2006. Bacillus subtilis Fnr senses oxygen via a [4Fe-4S] cluster coordinated by three cysteine residues without change in the oligomeric state. Mol. Microbiol. 60:1432-1445.
    • (2006) Mol. Microbiol. , vol.60 , pp. 1432-1445
    • Reents, H.1
  • 38
    • 2542475060 scopus 로고    scopus 로고
    • Two sensor kinases contribute to the hypoxic response of Mycobacterium tuberculosis
    • Roberts, D. M., R. P. Liao, G. Wisedchaisri, W. G. Hol, and D. R. Sherman. 2004. Two sensor kinases contribute to the hypoxic response of Mycobacterium tuberculosis. J. Biol. Chem. 279:23082-23087.
    • (2004) J. Biol. Chem. , vol.279 , pp. 23082-23087
    • Roberts, D.M.1    Liao, R.P.2    Wisedchaisri, G.3    Hol, W.G.4    Sherman, D.R.5
  • 39
    • 0035748547 scopus 로고    scopus 로고
    • The biochemical properties and phylogenies of phosphofructokinases from extremophiles
    • Ronimus, R. S., and H. W. Morgan. 2001. The biochemical properties and phylogenies of phosphofructokinases from extremophiles. Extremophiles 5:357-373.
    • (2001) Extremophiles , vol.5 , pp. 357-373
    • Ronimus, R.S.1    Morgan, H.W.2
  • 40
    • 0043142536 scopus 로고    scopus 로고
    • Transcriptional adaptation of Mycobacterium tuberculosis within macrophages: insights into the phagosomal environment
    • Schnappinger, D., et al. 2003. Transcriptional adaptation of Mycobacterium tuberculosis within macrophages: insights into the phagosomal environment. J. Exp. Med. 198:693-704.
    • (2003) J. Exp. Med. , vol.198 , pp. 693-704
    • Schnappinger, D.1
  • 41
    • 0344666693 scopus 로고    scopus 로고
    • Role of narK2X and narGHJI in hypoxic upregulation of nitrate reduction by Mycobacterium tuberculosis
    • Sohaskey, C. D., and L. G. Wayne. 2003. Role of narK2X and narGHJI in hypoxic upregulation of nitrate reduction by Mycobacterium tuberculosis. J. Bacteriol. 185:7247-7256.
    • (2003) J. Bacteriol. , vol.185 , pp. 7247-7256
    • Sohaskey, C.D.1    Wayne, L.G.2
  • 42
    • 34547568747 scopus 로고    scopus 로고
    • DosT and DevS are oxygen-switched kinases in Mycobacterium tuberculosis
    • Sousa, E. H., J. R. Tuckerman, G. Gonzalez, and M. A. Gilles-Gonzalez. 2007. DosT and DevS are oxygen-switched kinases in Mycobacterium tuberculosis. Protein Sci. 16:1708-1719.
    • (2007) Protein Sci , vol.16 , pp. 1708-1719
    • Sousa, E.H.1    Tuckerman, J.R.2    Gonzalez, G.3    Gilles-Gonzalez, M.A.4
  • 43
    • 0030660581 scopus 로고    scopus 로고
    • A genomic perspective on protein families
    • Tatusov, R. L., E. V. Koonin, and D. J. Lipman. 1997. A genomic perspective on protein families. Science 278:631-637.
    • (1997) Science , vol.278 , pp. 631-637
    • Tatusov, R.L.1    Koonin, E.V.2    Lipman, D.J.3
  • 44
    • 75549092201 scopus 로고    scopus 로고
    • The MiST2 database: a comprehensive genomics resource on microbial signal transduction
    • Ulrich, L. E., and I. B. Zhulin. 2010. The MiST2 database: a comprehensive genomics resource on microbial signal transduction. Nucleic Acids Res. 38:D401-D407.
    • (2010) Nucleic Acids Res , vol.38
    • Ulrich, L.E.1    Zhulin, I.B.2
  • 45
    • 46249101936 scopus 로고    scopus 로고
    • Expression of the Mycobacterium tuberculosis acr-coregulated genes from the DevR (DosR) regulon is controlled by multiple levels of regulation
    • Vasudeva-Rao, H. M., and K. A. McDonough. 2008. Expression of the Mycobacterium tuberculosis acr-coregulated genes from the DevR (DosR) regulon is controlled by multiple levels of regulation. Infect. Immun. 76: 2478-2489.
    • (2008) Infect. Immun. , vol.76 , pp. 2478-2489
    • Vasudeva-Rao, H.M.1    McDonough, K.A.2
  • 46
    • 3042750016 scopus 로고    scopus 로고
    • Mycobacterium tuberculosis gene expression during environmental conditions associated with latency
    • Voskuil, M. I. 2004. Mycobacterium tuberculosis gene expression during environmental conditions associated with latency. Tuberculosis (Edinburgh) 84:138-143.
    • (2004) Tuberculosis (Edinburgh) , vol.84 , pp. 138-143
    • Voskuil, M.I.1
  • 47
    • 0042140672 scopus 로고    scopus 로고
    • Inhibition of respiration by nitric oxide induces a Mycobacterium tuberculosis dormancy program
    • Voskuil, M. I., et al. 2003. Inhibition of respiration by nitric oxide induces a Mycobacterium tuberculosis dormancy program. J. Exp. Med. 198:705-713.
    • (2003) J. Exp. Med. , vol.198 , pp. 705-713
    • Voskuil, M.I.1
  • 48
    • 3042838120 scopus 로고    scopus 로고
    • Mycobacterium tuberculosis gene expression during adaptation to stationary phase and lowoxygen dormancy
    • Voskuil, M. I., K. C. Visconti, and G. K. Schoolnik. 2004. Mycobacterium tuberculosis gene expression during adaptation to stationary phase and lowoxygen dormancy. Tuberculosis (Edinburgh) 84:218-227.
    • (2004) Tuberculosis (Edinburgh) , vol.84 , pp. 218-227
    • Voskuil, M.I.1    Visconti, K.C.2    Schoolnik, G.K.3
  • 49
    • 0034780485 scopus 로고    scopus 로고
    • Nonreplicating persistence of Mycobacterium tuberculosis
    • Wayne, L. G., and C. D. Sohaskey. 2001. Nonreplicating persistence of Mycobacterium tuberculosis. Annu. Rev. Microbiol. 55:139-163.
    • (2001) Annu. Rev. Microbiol. , vol.55 , pp. 139-163
    • Wayne, L.G.1    Sohaskey, C.D.2
  • 50
    • 79851486240 scopus 로고    scopus 로고
    • Nitric oxide dioxygenation reaction in DevS and the initial response to nitric oxide in Mycobacterium tuberculosis
    • Yukl, E. T., et al. 2011. Nitric oxide dioxygenation reaction in DevS and the initial response to nitric oxide in Mycobacterium tuberculosis. Biochemistry 15:1023-1028.
    • (2011) Biochemistry , vol.15 , pp. 1023-1028
    • Yukl, E.T.1


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