-
1
-
-
59649110315
-
The roles of pore ring and plug in the SecY protein-conducting channel
-
Gumbart, J., and K. Schulten. 2008. The roles of pore ring and plug in the SecY protein-conducting channel. J. Gen. Physiol. 132:709-719.
-
(2008)
J. Gen. Physiol.
, vol.132
, pp. 709-719
-
-
Gumbart, J.1
Schulten, K.2
-
2
-
-
34249873947
-
Translocation of proteins into mitochondria
-
Neupert, W., and J. M. Herrmann. 2007. Translocation of proteins into mitochondria. Annu. Rev. Biochem. 76:723-749.
-
(2007)
Annu. Rev. Biochem.
, vol.76
, pp. 723-749
-
-
Neupert, W.1
Herrmann, J.M.2
-
3
-
-
6144254211
-
Polymer translocation through a pore in a membrane
-
Sung, W., and P. J. Park. 1996. Polymer translocation through a pore in a membrane. Phys. Rev. Lett. 77:783-786.
-
(1996)
Phys. Rev. Lett.
, vol.77
, pp. 783-786
-
-
Sung, W.1
Park, P.J.2
-
4
-
-
0029979607
-
Common principles of protein translocation across membranes
-
Schatz, G., and B. Dobberstein. 1996. Common principles of protein translocation across membranes. Science. 271:1519-1526. (Pubitemid 26097210)
-
(1996)
Science
, vol.271
, Issue.5255
, pp. 1519-1526
-
-
Schatz, G.1
Dobberstein, B.2
-
5
-
-
0032845645
-
Driven polymer translocation through a narrow pore
-
Lubensky, D. K., and D. R. Nelson. 1999. Driven polymer translocation through a narrow pore. Biophys. J. 77:1824-1838. (Pubitemid 29463147)
-
(1999)
Biophysical Journal
, vol.77
, Issue.4
, pp. 1824-1838
-
-
Lubensky, D.K.1
Nelson, D.R.2
-
6
-
-
79051470426
-
Driven polymer translocation through a nanopore: A manifestation of anomalous diffusion
-
Dubbeldam, J., A. Milchev, ..., T. Vilgis. 2007. Driven polymer translocation through a nanopore: A manifestation of anomalous diffusion. Europhys. Lett. 79:18002.
-
(2007)
Europhys. Lett.
, vol.79
, pp. 18002
-
-
Dubbeldam, J.1
Milchev, A.2
Vilgis, T.3
-
8
-
-
28544442609
-
Protein translocation across biological membranes
-
DOI 10.1126/science.1113752
-
Wickner, W., and R. Schekman. 2005. Protein translocation across biological membranes. Science. 310:1452-1456. (Pubitemid 41746334)
-
(2005)
Science
, vol.310
, Issue.5753
, pp. 1452-1456
-
-
Wickner, W.1
Schekman, R.2
-
9
-
-
33645765294
-
Simulation of polymer translocation through protein channels
-
Muthukumar, M., and C. Y. Kong. 2006. Simulation of polymer translocation through protein channels. Proc. Natl. Acad. Sci. USA. 103:5273-5278.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 5273-5278
-
-
Muthukumar, M.1
Kong, C.Y.2
-
10
-
-
0141611113
-
Simulation studies of polymer translocation through a channel
-
Loebl, H. C., R. Randel, ..., C. C. Matthai. 2003. Simulation studies of polymer translocation through a channel. Phys. Rev. E. 67:041913.
-
(2003)
Phys. Rev. E
, vol.67
, pp. 041913
-
-
Loebl, H.C.1
Randel, R.2
Matthai, C.C.3
-
11
-
-
0014979468
-
Purification of Intact Flagella from Escherichia coli and Bacillus subtilis
-
DePamphilis, M., and J. Alder. 1971. Purification of Intact Flagella from Escherichia coli and Bacillus subtilis. J. Bacteriol. 105:376-383.
-
(1971)
J. Bacteriol.
, vol.105
, pp. 376-383
-
-
DePamphilis, M.1
Alder, J.2
-
12
-
-
0037715359
-
Flagellar movement driven by proton translocation
-
DOI 10.1016/S0014-5793(03)00397-1
-
Blair, D. F. 2003. Flagellar movement driven by proton translocation. FEBS Lett. 545:86-95. (Pubitemid 36629640)
-
(2003)
FEBS Letters
, vol.545
, Issue.1
, pp. 86-95
-
-
Blair, D.F.1
-
13
-
-
14844293874
-
Building the atomic model for the bacterial flagellar filament by electron cryomicroscopy and image analysis
-
DOI 10.1016/j.str.2005.02.003
-
Yonekura, K., S. Maki-Yonekura, and K. Namba. 2005. Building the atomic model for the bacterial flagellar filament by electron cryomicroscopy and image analysis. Structure. 13:407-412. (Pubitemid 40342880)
-
(2005)
Structure
, vol.13
, Issue.3
, pp. 407-412
-
-
Yonekura, K.1
Maki-Yonekura, S.2
Namba, K.3
-
14
-
-
33845381177
-
Coarse-grained molecular dynamics simulations of a rotating bacterial flagellum
-
DOI 10.1529/biophysj.106.093443
-
Arkhipov, A., P. L. Freddolino, ..., K. Schulten. 2006. Coarse-grained molecular dynamics simulations of a rotating bacterial flagellum. Biophys. J. 91:4589-4597. (Pubitemid 44904243)
-
(2006)
Biophysical Journal
, vol.91
, Issue.12
, pp. 4589-4597
-
-
Arkhipov, A.1
Freddolino, P.L.2
Imada, K.3
Namba, K.4
Schulten, K.5
-
15
-
-
0024326483
-
Structure of the core and central channel of bacterial flagella
-
DOI 10.1038/342648a0
-
Namba, K., I. Yamashita, and F. Vonderviszt. 1989. Structure of the core and central channel of bacterial flagella. Nature. 342:648-654. (Pubitemid 20001580)
-
(1989)
Nature
, vol.342
, Issue.6250
, pp. 648-654
-
-
Namba, K.1
Yamashita, I.2
Vonderviszt, F.3
-
16
-
-
0016370644
-
Assembly of Salmonella flagellin in vitro and in vivo
-
Iino, T. 1974. Assembly of Salmonella flagellin in vitro and in vivo. J. Supramol. Struct. 2:372-384.
-
(1974)
J. Supramol. Struct.
, vol.2
, pp. 372-384
-
-
Iino, T.1
-
17
-
-
0042238051
-
Complete atomic model of the bacterial flagellar filament by electron cryomicroscopy
-
DOI 10.1038/nature01830
-
Yonekura, K., S. Maki-Yonekura, and K. Namba. 2003. Complete atomic model of the bacterial flagellar filament by electron cryomicroscopy. Nature. 424:643-650. (Pubitemid 36987983)
-
(2003)
Nature
, vol.424
, Issue.6949
, pp. 643-650
-
-
Yonekura, K.1
Maki-Yonekura, S.2
Namba, K.3
-
18
-
-
0029039662
-
The structure of the Rtype straight flagellar filament of Salmonella at 9Å. resolution by electron cryomicroscopy
-
Mimori, Y., I. Yamashita, ..., K. Namba. 1995. The structure of the Rtype straight flagellar filament of Salmonella at 9Å. resolution by electron cryomicroscopy. J. Mol. Biol. 249:69-87.
-
(1995)
J. Mol. Biol.
, vol.249
, pp. 69-87
-
-
Mimori, Y.1
Yamashita, I.2
Namba, K.3
-
19
-
-
0035868953
-
Structure of the bacterial flagellar protofilament and implications for a switch for supercoiling
-
DOI 10.1038/35066504
-
Samatey, F. A., K. Imada, ..., K. Namba. 2001. Structure of the bacterial flagellar protofilament and implications for a switch for supercoiling. Nature. 410:331-337. (Pubitemid 32246042)
-
(2001)
Nature
, vol.410
, Issue.6826
, pp. 331-337
-
-
Samatey, F.A.1
Imada, K.2
Nagashima, S.3
Vonderviszt, F.4
Kumasaka, T.5
Yamamoto, M.6
Namba, K.7
-
20
-
-
10344249890
-
Process of protein transport by the type III secretion system
-
DOI 10.1128/MMBR.68.4.771-795.2004
-
Ghosh, P. 2004. Process of protein transport by the type III secretion system. Microbiol. Mol. Biol. Rev. 68:771-795. (Pubitemid 39628536)
-
(2004)
Microbiology and Molecular Biology Reviews
, vol.68
, Issue.4
, pp. 771-795
-
-
Ghosh, P.1
-
21
-
-
3343019337
-
Domain organization and function of Salmonella FliK, a flagellar hook-length control protein
-
DOI 10.1016/j.jmb.2004.06.012, PII S002228360400676X
-
Minamino, T., Y. Saijo-Hamano, ..., K. Namba. 2004. Domain organization and function of Salmonella FliK, a flagellar hook-length control protein. J. Mol. Biol. 341:491-502. (Pubitemid 38987785)
-
(2004)
Journal of Molecular Biology
, vol.341
, Issue.2
, pp. 491-502
-
-
Minamino, T.1
Saijo-Hamano, Y.2
Furukawa, Y.3
Gonzalez-Pedrajo, B.4
Macnab, R.M.5
Namba, K.6
-
22
-
-
0037387967
-
Substrate specificity classes and the recognition signal for Salmonella type III flagellar export
-
DOI 10.1128/JB.185.8.2485-2492.2003
-
Hirano, T., T. Minamino, ..., R. Macnab. 2003. Substrate specificity classes and the recognition signal for Salmonella type III flagellar export. J. Bacteriol. 185:2485-2492. (Pubitemid 36417972)
-
(2003)
Journal of Bacteriology
, vol.185
, Issue.8
, pp. 2485-2492
-
-
Hirano, T.1
Minamino, T.2
Namba, K.3
Macnab, R.M.4
-
24
-
-
0035131438
-
Roles of partly unfolded conformations in macromolecular self-assembly
-
DOI 10.1046/j.1365-2443.2001.00384.x
-
Namba, K. 2001. Roles of partly unfolded conformations in macromolecular self-assembly. Genes Cells. 6:1-12. (Pubitemid 32156749)
-
(2001)
Genes to Cells
, vol.6
, Issue.1
, pp. 1-12
-
-
Namba, K.1
-
25
-
-
43849090358
-
Thermal unfolding simulations of bacterial flagellin: Insight into its refolding before assembly
-
Chng, C., and A. Kitao. 2008. Thermal unfolding simulations of bacterial flagellin: insight into its refolding before assembly. Biophys. J. 94:3858-3871.
-
(2008)
Biophys. J.
, vol.94
, pp. 3858-3871
-
-
Chng, C.1
Kitao, A.2
-
27
-
-
0015978443
-
Flagellar elongation: An example of controlled growth
-
Levy, E. M. 1973. Flagellar elongation: an example of controlled growth. J. Theor. Biol. 43:133-149.
-
(1973)
J. Theor. Biol.
, vol.43
, pp. 133-149
-
-
Levy, E.M.1
-
28
-
-
0016255858
-
Flagellar elongation as a moving boundary problem
-
Levy, E. M. 1974. Flagellar elongation as a moving boundary problem. Bull. Math. Biol. 36:265-273.
-
(1974)
Bull. Math. Biol.
, vol.36
, pp. 265-273
-
-
Levy, E.M.1
-
29
-
-
0343681011
-
Atomic-scale friction of a tungsten tip on a graphite surface
-
Mate, C. M., G. M. McClelland, ..., S. Chiang. 1987. Atomic-scale friction of a tungsten tip on a graphite surface. Phys. Rev. Lett. 59: 1942-1945.
-
(1987)
Phys. Rev. Lett.
, vol.59
, pp. 1942-1945
-
-
Mate, C.M.1
McClelland, G.M.2
Chiang, S.3
-
30
-
-
15744396812
-
Velocity dependence of atomic-scale friction: A comparative study of the one- and two-dimensional Tomlinson model
-
Fusco, C., and A. Fasolino. 2005. Velocity dependence of atomic-scale friction: a comparative study of the one- and two-dimensional Tomlinson model. Phys. Rev. B. 71:045413.
-
(2005)
Phys. Rev. B
, vol.71
, pp. 045413
-
-
Fusco, C.1
Fasolino, A.2
-
31
-
-
0343390680
-
Creep, stick-slip, and dry-friction dynamics: Experiments and a heuristic model
-
Heslot, F., T. Baumberger, ..., C. Caroli. 1994. Creep, stick-slip, and dry-friction dynamics: experiments and a heuristic model. Phys. Rev. E. 49:4973-4988.
-
(1994)
Phys. Rev. E.
, vol.49
, pp. 4973-4988
-
-
Heslot, F.1
Baumberger, T.2
Caroli, C.3
-
32
-
-
0030213133
-
Creeplike relaxation at the interface between rough solids under shear
-
Baumberger, T., and L. Gauthier. 1996. Creeplike relaxation at the interface between rough solids under shear. J. Phys. I (Fr.). 6:1021- 1030. (Pubitemid 126793438)
-
(1996)
Journal de Physique I
, vol.6
, Issue.8
, pp. 1021-1030
-
-
Baumberger, T.1
Gauthier, L.2
-
33
-
-
51649094324
-
How static is static friction?
-
Muser, M. H. 2008. How static is static friction? Proc. Natl. Acad. Sci. USA. 105:13187-13188.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 13187-13188
-
-
Muser, M.H.1
-
36
-
-
24144478521
-
Mechanism of force generation of a viral DNA packaging motor
-
DOI 10.1016/j.cell.2005.06.024, PII S0092867405006434
-
Chemla, Y. R., K. Aathavan, ..., C. Bustamante. 2005. Mechanism of force generation of a viral DNA packaging motor. Cell. 122:683-692. (Pubitemid 41242634)
-
(2005)
Cell
, vol.122
, Issue.5
, pp. 683-692
-
-
Chemla, Y.R.1
Aathavan, K.2
Michaelis, J.3
Grimes, S.4
Jardine, P.J.5
Anderson, D.L.6
Bustamante, C.7
-
37
-
-
21244473581
-
Forces during bacteriophage DNA packaging and ejection
-
DOI 10.1529/biophysj.104.047134
-
Purohit, P. K., M. M. Inmdar, ..., R. Phillips. 2005. Forces during bacteriophage DNA packaging and ejection. Biophys. J. 88:851-866. (Pubitemid 40975923)
-
(2005)
Biophysical Journal
, vol.88
, Issue.2
, pp. 851-866
-
-
Purohit, P.K.1
Inamdar, M.M.2
Grayson, P.D.3
Squires, T.M.4
Kondev, J.5
Phillips, R.6
-
39
-
-
27344436659
-
Scalable molecular dynamics with NAMD
-
DOI 10.1002/jcc.20289
-
Phillips, J. C., R. Braun, ..., K. Schulten. 2005. Scalable molecular dynamics with NAMD. J. Comput. Chem. 26:1781-1802. (Pubitemid 43078511)
-
(2005)
Journal of Computational Chemistry
, vol.26
, Issue.16
, pp. 1781-1802
-
-
Phillips, J.C.1
Braun, R.2
Wang, W.3
Gumbart, J.4
Tajkhorshid, E.5
Villa, E.6
Chipot, C.7
Skeel, R.D.8
Kale, L.9
Schulten, K.10
-
40
-
-
0041784950
-
All-atom empirical potential for molecular modeling and dynamics studies of proteins
-
MacKerell, Jr., A. D., D. Bashford, ..., M. Karplus. 1998. All-atom empirical potential for molecular modeling and dynamics studies of proteins. J. Phys. Chem. B. 102:3586-3616. (Pubitemid 128576688)
-
(1998)
Journal of Physical Chemistry B
, vol.102
, Issue.18
, pp. 3586-3616
-
-
MacKerell Jr., A.D.1
Bashford, D.2
Bellott, M.3
Dunbrack Jr., R.L.4
Evanseck, J.D.5
Field, M.J.6
Fischer, S.7
Gao, J.8
Guo, H.9
Ha, S.10
Joseph-McCarthy, D.11
Kuchnir, L.12
Kuczera, K.13
Lau, F.T.K.14
Mattos, C.15
Michnick, S.16
Ngo, T.17
Nguyen, D.T.18
Prodhom, B.19
Reiher III, W.E.20
Roux, B.21
Schlenkrich, M.22
Smith, J.C.23
Stote, R.24
Straub, J.25
Watanabe, M.26
Wiorkiewicz-Kuczera, J.27
Yin, D.28
Karplus, M.29
more..
-
41
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
Jorgensen, W. L., J. Chandrasekhar, ..., M. L. Klein. 1983. Comparison of simple potential functions for simulating liquid water. J. Chem. Phys. 79:926-935.
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Klein, M.L.3
-
42
-
-
0029042213
-
Structure of bacterial flagellar filaments at 11 Å. resolution: Packing of the a-helices
-
Morgan, D., C. Owen, ..., D. DeRosier. 1995. Structure of bacterial flagellar filaments at 11 Å. resolution: packing of the a-helices. J. Mol. Biol. 249:88-110.
-
(1995)
J. Mol. Biol.
, vol.249
, pp. 88-110
-
-
Morgan, D.1
Owen, C.2
DeRosier, D.3
-
43
-
-
0035312645
-
Steered molecular dynamics and mechanical functions of proteins
-
DOI 10.1016/S0959-440X(00)00194-9
-
Isralewitz, B., M. Gao, and K. Schulten. 2001. Steered molecular dynamics and mechanical functions of proteins. Curr. Opin. Struct. Biol. 11:224-230. (Pubitemid 32289426)
-
(2001)
Current Opinion in Structural Biology
, vol.11
, Issue.2
, pp. 224-230
-
-
Isralewitz, B.1
Gao, M.2
Schulten, K.3
-
44
-
-
1842479952
-
Exploring Protein Native States and Large-Scale Conformational Changes with a Modified Generalized Born Model
-
DOI 10.1002/prot.20033
-
Onufriev, A., D. Bashford, and D. A. Case. 2004. Exploring protein native states and large-scale conformational changes with a modified generalized Born model. Proteins. 55:383-394. (Pubitemid 38437495)
-
(2004)
Proteins: Structure, Function and Genetics
, vol.55
, Issue.2
, pp. 383-394
-
-
Onufriev, A.1
Bashford, D.2
Case, D.A.3
-
45
-
-
0031002460
-
Folding-unfolding transitions in single titin molecules characterized with laser tweezers
-
DOI 10.1126/science.276.5315.1112
-
Kellermayer, M., S. Smith, ..., C. Bustamante. 1997. Folding-unfolding transition in single titin modules characterized with laser tweezers. Science. 276:1112-1116. (Pubitemid 27218119)
-
(1997)
Science
, vol.276
, Issue.5315
, pp. 1112-1116
-
-
Kellermayer, M.S.Z.1
Smith, S.B.2
Granzier, H.L.3
Bustamante, C.4
-
46
-
-
0037194788
-
Reverse engineering of the giant muscle protein titin
-
DOI 10.1038/nature00938
-
Li, H., W. Linke, ..., J. M. Fernandez. 2002. Reverse engineering of the giant muscle protein titin. Nature. 418:998-1002. (Pubitemid 34976037)
-
(2002)
Nature
, vol.418
, Issue.6901
, pp. 998-1002
-
-
Li, H.1
Linke, W.A.2
Oberhauser, A.F.3
Carrion-Vazquez, M.4
Kerkvliet, J.G.5
Lu, H.6
Marszalek, P.E.7
Fernandez, J.M.8
-
47
-
-
33644849450
-
Nanospring behavior of ankyrin repeats
-
Lee, G., K. Abdi, ..., P. E. Marszalek. 2006. Nanospring behavior of ankyrin repeats. Nature. 440:246-249.
-
(2006)
Nature
, vol.440
, pp. 246-249
-
-
Lee, G.1
Abdi, K.2
Marszalek, P.E.3
-
49
-
-
33749442647
-
MultiSeq: Unifying sequence and structure data for evolutionary analysis
-
Roberts, E., J. Eargle, ..., Z. Luthey-Schulten. 2006. MultiSeq: unifying sequence and structure data for evolutionary analysis. BMC Bioinform. 7:382.
-
(2006)
BMC Bioinform
, vol.7
, pp. 382
-
-
Roberts, E.1
Eargle, J.2
Luthey-Schulten, Z.3
|