Building the atomic model for the bacterial flagellar filament by electron cryomicroscopy and image analysis

Structure

Volumn 13, Issue 3, 2005, Pages 407-412

  Yonekura, Koji ^a,b,c   Maki Yonekura, Saori ^a,c   Namba, Keiichi ^b,c  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b OSAKA UNIVERSITY   (Japan)

^c JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ALPHA HELIX; ARTICLE; BACTERIAL FLAGELLUM; CRYOELECTRON MICROSCOPY; IMAGE ANALYSIS; IMAGE QUALITY; IMAGING SYSTEM; MACROMOLECULE; MOLECULAR MODEL; OPTICAL RESOLUTION; PRIORITY JOURNAL; STRUCTURE ANALYSIS;

EID: 14844293874     PISSN: 09692126     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.str.2005.02.003     Document Type: Article

References (28)

1. S. Asakura Polymerization of flagellin and polymorphism of flagella Adv. Biophys. 1 1970 99 155
2. H.C. Berg, and R.A. Anderson Bacteria swim by rotating their flagellar filaments Nature 245 1973 380 382
3. R. Beroukhim, and N. Unwin Distortion correction of tubular crystals: improvements in the acetylcholine receptor structure Ultramicroscopy 70 1997 57 81
4. M.J. Borgnia, D. Shi, P. Zhang, and J.L. Milne Visualization of α-helical features in a density map constructed using 9 molecular images of the 1.8 MDa icosahedral core of pyruvate dehydrogenase J. Struct. Biol. 147 2004 136 145
5. A.T. Brünger, J. Kuriyan, and M. Karplus Crystallography R factor refinement by molecular dynamics Science 235 1987 458 460
6. C.R. Calladine Construction of bacterial flagella Nature 225 1975 121 124
7. C.R. Calladine Design requirements for the construction of bacterial flagella J. Theor. Biol. 57 1976 469 489
8. C.R. Calladine Change of waveform in bacterial flagella: the role of mechanics at the molecular level J. Mol. Biol. 118 1978 457 479
9. Y. Fujiyoshi The structural study of membrane proteins by electron crystallography Adv. Biophys. 35 1998 25 80
10. R. Henderson, J.M. Baldwin, T.A. Ceska, F. Zemlin, E. Beckmann, and K.H. Downing Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy J. Mol. Biol 213 1990 899 929
11. H.C. Hyman, and S. Trachtenberg Point mutations that lock Salmonella typhimurium flagellar filaments in the straight right-handed and left-handed forms and their relation to filament superhelicity J. Mol. Biol. 220 1991 79 88
12. S. Kanto, H. Okino, S.-I. Aizawa, and S. Yamaguchi Amino acids responsible for flagellar shape are distributed in terminal regions of flagellin J. Mol. Biol. 219 1991 471 480
13. S. Kudo, Y. Magariyama, and S.-I. Aizawa Abrupt changes in flagellar rotation observed by laser darkfield microscopy Nature 346 1990 677 680
14. W. Kühlbrandt, D.N. Wang, and Y. Fujiyoshi Atomic model of plant light-harvesting complex by electron crystallography Nature 367 1994 614 621
15. S.H. Larsen, R.W. Reader, E.N. Kort, W.W. Tso, and J. Adler Change in direction of flagellar rotation is the basis of the chemotactic response in Escherichia coli Nature 249 1974 74 77
16. R.M. Macnab, and M.K. Ornston Normal-to-curly flagellar transitions and their role in bacterial tumbling. Stabilization of an alternative quaternary structure by mechanical force J. Mol. Biol. 112 1977 1 30
17. K. Murata, K. Mitsuoka, T. Hirai, T. Walz, P. Agre, J.B. Heymann, J.B. Engel, and A. Fujiyoshi Structural determinants of water permeation through aquaporin-1 Nature 407 2000 599 605
18. E. Nogales, S.G. Wolf, and K.H. Downing Structure of the αβ tubulin dimer by electron crystallography Nature 391 1998 199 203
19. E.J. O'Brien, and P.M. Bennett Structure of straight flagella from a mutant Salmonella J. Mol. Biol. 70 1972 133 152
20. W.S. Ryu, R.M. Berry, and H.C. Berg Torque-generating units of the flagellar motor of Escherichia coli have a high duty ratio Nature 403 2000 444 447
21. F.A. Samatey, K. Imada, S. Nagashima, F. Vonderviszt, T. Kumasaka, M. Yamamoto, and K. Namba Structure of the bacterial flagellar protofilament and implications for a switch for supercoiling Nature 410 2001 331 337
22. M. Silverman, and M. Simon Flagellar rotation and the mechanism of bacterial motility Nature 249 1974 73 74
23. L. Turner, W.S. Ryu, and H.C. Berg Real-time imaging of fluorescent flagellar filaments J. Bacteriol. 182 2000 2793 2801
24. H. Wang, and G. Stubbs Molecular dynamics in refinement against fiber diffraction data Acta Crystallogr. A 49 1993 504 513
25. I. Yamashita, K. Hasegawa, H. Suzuki, F. Vonderviszt, Y. Mimori-Kiyosue, and K. Namba Structure and switching of bacterial flagellar filament studied by X-ray fiber diffraction Nat. Struct. Biol. 5 1998 125 132
26. K. Yonekura, and C. Toyoshima Structure determination of tubular crystals of membrane proteins. III. Solvent flattening Ultramicroscopy 84 2000 29 45
27. K. Yonekura, S. Maki-Yonekura, and K. Namba Complete atomic model of the bacterial flagellar filament by electron cryomicroscopy Nature 424 2003 643 650
28. K. Yonekura, C. Toyoshima, S. Maki-Yonekura, and K. Namba GUI programs for processing individual images in early stages of helical image reconstruction - for high-resolution structure analysis J. Struct. Biol. 144 2003 184 194