-
1
-
-
0342723790
-
Frequent alternative splicing of human genes
-
DOI 10.1101/gr.9.12.1288
-
Mironov, A., Fickett, J. and Gelfand, M. (1999) Frequent alternative splicing of human genes. Genome Res., 9, 1288-1293. (Pubitemid 30042512)
-
(1999)
Genome Research
, vol.9
, Issue.12
, pp. 1288-1293
-
-
Mironov, A.A.1
Fickett, J.W.2
Gelfand, M.S.3
-
2
-
-
0036712421
-
Genome-wide detection of tissue-specific alternative splicing in the human transcriptome
-
Xu, Q., Modrek, B. and Lee, C. (2002) Genome-wide detection of tissue-specific alternative splicing in the human transcriptome. Nucleic Acids Res., 30, 3754-3766. (Pubitemid 35012448)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.17
, pp. 3754-3766
-
-
Xu, Q.1
Modrek, B.2
Lee, C.3
-
3
-
-
0038617729
-
Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss
-
DOI 10.1038/ng1159
-
Modrek, B. and Lee, C. (2003) Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss. Nat. Genet., 34, 177-180. (Pubitemid 36666928)
-
(2003)
Nature Genetics
, vol.34
, Issue.2
, pp. 177-180
-
-
Modrek, B.1
Lee, C.J.2
-
4
-
-
2542603045
-
Evidence for a subpopulation of conserved alternative splicing events under selection pressure for protein reading frame preservation
-
DOI 10.1093/nar/gkh284
-
Resch, A., Xing, Y., Alekseyenko, A., Modrek, B. and Lee, C. (2004) Evidence for a subpopulation of conserved alternative splicing events under selection pressure for protein reading frame preservation. Nucleic Acids Res., 32, 1261-1269. (Pubitemid 38854727)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.4
, pp. 1261-1269
-
-
Resch, A.1
Xing, Y.2
Alekseyenko, A.3
Modrek, B.4
Lee, C.5
-
5
-
-
0037422575
-
Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans
-
DOI 10.1073/pnas.0136770100
-
Lewis, B., Green, R. and Brenner, S. (2003) Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans. Proc. Natl Acad. Sci. USA, 100, 189-192. (Pubitemid 36078050)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.1
, pp. 189-192
-
-
Lewis, B.P.1
Green, R.E.2
Brenner, S.E.3
-
6
-
-
56549101959
-
Alternative isoform regulation in human tissue transcriptomes
-
DOI 10.1038/nature07509, PII NATURE07509
-
Wang, E., Sandberg, R., Luo, S., Khrebtukova, I., Zhang, L., Mayr, C., Kingsmore, S., Schroth, G. and Burge, C. (2008) Alternative isoform regulation in human tissue transcriptomes. Nature, 456, 470-476. (Pubitemid 352759009)
-
(2008)
Nature
, vol.456
, Issue.7221
, pp. 470-476
-
-
Wang, E.T.1
Sandberg, R.2
Luo, S.3
Khrebtukova, I.4
Zhang, L.5
Mayr, C.6
Kingsmore, S.F.7
Schroth, G.P.8
Burge, C.B.9
-
7
-
-
1942533477
-
Detection and evaluation of intron retention events in the human transcriptome
-
DOI 10.1261/rna.5123504
-
Galante, P., Sakabe, N., Kirschbaum-Slager, N. and de Souza, S. (2004) Detection and evaluation of intron retention events in the human transcriptome. RNA, 10, 757-765. (Pubitemid 38529738)
-
(2004)
RNA
, vol.10
, Issue.5
, pp. 757-765
-
-
Galante, P.A.F.1
Sakabe, N.J.2
Kirschbaum-Slager, N.3
De Souza, S.J.4
-
8
-
-
9144271133
-
ORESTES are enriched in rare exon usage variants affecting the encoded proteins
-
DOI 10.1016/j.crvi.2003.09.027
-
Sakabe, N., de Souza, J., Galante, P., de Oliveira, P., Passetti, F., Brentani, H., Osório, E., Zaiats, A., Leerkes, M., Kitajima, J. et al. (2003) ORESTES are enriched in rare exon usage variants affecting the encoded proteins. C R Biol., 326, 979-985. (Pubitemid 38016453)
-
(2003)
Comptes Rendus - Biologies
, vol.326
, Issue.10-11
, pp. 979-985
-
-
Sakabe, N.J.1
De Souza, J.E.S.2
Galante, P.A.F.3
De Oliveira, P.S.L.4
Passetti, F.5
Brentani, H.6
Osorio, E.C.7
Zaiats, A.C.8
Leerkes, M.R.9
Kitajima, J.P.10
Brentani, R.R.11
Strausberg, R.L.12
Simpson, A.J.G.13
De Souza, S.J.14
-
9
-
-
1942467065
-
Genomic variants in exons and introns: Identifying the splicing spoilers
-
DOI 10.1038/nrg1327
-
Pagani, F. and Baralle, F. (2004) Genomic variants in exons and introns: identifying the splicing spoilers. Nat. Rev. Genet., 5, 389-396. (Pubitemid 38529410)
-
(2004)
Nature Reviews Genetics
, vol.5
, Issue.5
, pp. 389-396
-
-
Pagani, F.1
Baralle, F.E.2
-
10
-
-
42449098125
-
Splicing regulation: From a parts list of regulatory elements to an integrated splicing code
-
DOI 10.1261/rna.876308
-
Wang, Z. and Burge, C. (2008) Splicing regulation: from a parts list of regulatory elements to an integrated splicing code. RNA, 14, 802-813. (Pubitemid 351574901)
-
(2008)
RNA
, vol.14
, Issue.5
, pp. 802-813
-
-
Wang, Z.1
Burge, C.B.2
-
11
-
-
76349090209
-
Divergence of exonic splicing elements after gene duplication and the impact on gene structures
-
Zhang, Z., Zhou, L., Wang, P., Liu, Y., Chen, X., Hu, L. and Kong, X. (2009) Divergence of exonic splicing elements after gene duplication and the impact on gene structures. Genome Biol., 10, R120.
-
(2009)
Genome Biol.
, vol.10
-
-
Zhang, Z.1
Zhou, L.2
Wang, P.3
Liu, Y.4
Chen, X.5
Hu, L.6
Kong, X.7
-
12
-
-
60849108914
-
Splicing of designer exons reveals unexpected complexity in pre-mRNA splicing
-
Zhang, X., Arias, M., Ke, S. and Chasin, L. (2009) Splicing of designer exons reveals unexpected complexity in pre-mRNA splicing. RNA, 15, 367-376.
-
(2009)
RNA
, vol.15
, pp. 367-376
-
-
Zhang, X.1
Arias, M.2
Ke, S.3
Chasin, L.4
-
13
-
-
33749056769
-
An RNA map predicting Nova-dependent splicing regulation
-
DOI 10.1038/nature05304, PII NATURE05304
-
Ule, J., Stefani, G., Mele, A., Ruggiu, M., Wang, X., Taneri, B., Gaasterland, T., Blencowe, B. and Darnell, R. (2006) An RNA map predicting Nova-dependent splicing regulation. Nature, 444, 580-586. (Pubitemid 44864431)
-
(2006)
Nature
, vol.444
, Issue.7119
, pp. 580-586
-
-
Ule, J.1
Stefani, G.2
Mele, A.3
Ruggiu, M.4
Wang, X.5
Taneri, B.6
Gaasterland, T.7
Blencowe, B.J.8
Darnell, R.B.9
-
14
-
-
21244470351
-
Identification of human exons overexpressed in tumors through the use of genome and expressed sequence data
-
DOI 10.1152/physiolgenomics.00237.2004
-
Kirschbaum-Slager, N., Parmigiani, R., Camargo, A. and de Souza, S. (2005) Identification of human exons overexpressed in tumors through the use of genome and expressed sequence data. Physiol. Genomics, 21, 423-432. (Pubitemid 40898503)
-
(2005)
Physiological Genomics
, vol.21
, pp. 423-432
-
-
Kirschbaum-Slager, N.1
Parmigiani, R.B.2
Camargo, A.A.3
De Souza, S.J.4
-
15
-
-
34250212945
-
Sense-antisense pairs in mammals: Functional and evolutionary considerations
-
Galante, P., Vidal, D., de Souza, J., Camargo, A. and de Souza, S. (2007) Sense-antisense pairs in mammals: functional and evolutionary considerations. Genome Biol., 8, R40.
-
(2007)
Genome Biol.
, vol.8
-
-
Galante, P.1
Vidal, D.2
De Souza, J.3
Camargo, A.4
De Souza, S.5
-
16
-
-
0032128255
-
Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins
-
Liu, H., Zhang, M. and Krainer, A. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev., 12, 1998-2012. (Pubitemid 28323874)
-
(1998)
Genes and Development
, vol.12
, Issue.13
, pp. 1998-2012
-
-
Liu, H.-X.1
Zhang, M.2
Krainer, A.R.3
-
17
-
-
0033963336
-
Exonic splicing enhancer motif recognized by human SC35 under splicing conditions
-
DOI 10.1128/MCB.20.3.1063-1071.2000
-
Liu, H., Chew, S., Cartegni, L., Zhang, M. and Krainer, A. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol. Cell. Biol., 20, 1063-1071. (Pubitemid 30044243)
-
(2000)
Molecular and Cellular Biology
, vol.20
, Issue.3
, pp. 1063-1071
-
-
Liu, H.-X.1
Chew, S.L.2
Cartegni, L.3
Zhang, M.Q.4
Krainer, A.R.5
-
18
-
-
0037047644
-
Predictive identification of exonic splicing enhancers in human genes
-
DOI 10.1126/science.1073774
-
Fairbrother, W., Yeh, R., Sharp, P. and Burge, C. (2002) Predictive identification of exonic splicing enhancers in human genes. Science, 297, 1007-1013. (Pubitemid 34856033)
-
(2002)
Science
, vol.297
, Issue.5583
, pp. 1007-1013
-
-
Fairbrother, W.G.1
Yeh, R.-F.2
Sharp, P.A.3
Burge, C.B.4
-
19
-
-
2642525438
-
Computational definition of sequence motifs governing constitutive exon splicing
-
DOI 10.1101/gad.1195304
-
Zhang, X. and Chasin, L. (2004) Computational definition of sequence motifs governing constitutive exon splicing. Genes Dev., 18, 1241-1250. (Pubitemid 38720592)
-
(2004)
Genes and Development
, vol.18
, Issue.11
, pp. 1241-1250
-
-
Zhang, X.H.-F.1
Chasin, L.A.2
-
20
-
-
10944256767
-
Systematic identification and analysis of exonic splicing silencers
-
DOI 10.1016/j.cell.2004.11.010, PII S0092867404010566
-
Wang, Z., Rolish, M., Yeo, G., Tung, V., Mawson, M. and Burge, C. (2004) Systematic identification and analysis of exonic splicing silencers. Cell, 119, 831-845. (Pubitemid 40017689)
-
(2004)
Cell
, vol.119
, Issue.6
, pp. 831-845
-
-
Wang, Z.1
Rolish, M.E.2
Yeo, G.3
Tung, V.4
Mawson, M.5
Burge, C.B.6
-
21
-
-
33747891736
-
An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers
-
DOI 10.1093/hmg/ddl171
-
Smith, P., Zhang, C., Wang, J., Chew, S., Zhang, M. and Krainer, A. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum. Mol. Genet., 15, 2490-2508. (Pubitemid 44288702)
-
(2006)
Human Molecular Genetics
, vol.15
, Issue.16
, pp. 2490-2508
-
-
Smith, P.J.1
Zhang, C.2
Wang, J.3
Chew, S.L.4
Zhang, M.Q.5
Krainer, A.R.6
-
22
-
-
39549117801
-
Computational analysis of splicing errors and mutations in human transcripts
-
Kurmangaliyev, Y. and Gelfand, M. (2008) Computational analysis of splicing errors and mutations in human transcripts. BMC Genomics, 9, 13.
-
(2008)
BMC Genomics
, vol.9
, pp. 13
-
-
Kurmangaliyev, Y.1
Gelfand, M.2
-
23
-
-
24944433166
-
Distribution of SR protein exonic splicing enhancer motifs in human protein-coding genes
-
DOI 10.1093/nar/gki810
-
Wang, J., Smith, P., Krainer, A. and Zhang, M. (2005) Distribution of SR protein exonic splicing enhancer motifs in human protein-coding genes. Nucleic Acids Res., 33, 5053-5062. (Pubitemid 41487813)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.16
, pp. 5053-5062
-
-
Wang, J.1
Smith, P.J.2
Krainer, A.R.3
Zhang, M.Q.4
-
24
-
-
34548738566
-
Population genomics of human gene expression
-
DOI 10.1038/ng2142, PII NG2142
-
Stranger, B., Nica, A., Forrest, M., Dimas, A., Bird, C., Beazley, C., Ingle, C., Dunning, M., Flicek, P., Koller, D. et al. (2007) Population genomics of human gene expression. Nat. Genet., 39, 1217-1224. (Pubitemid 47482691)
-
(2007)
Nature Genetics
, vol.39
, Issue.10
, pp. 1217-1224
-
-
Stranger, B.E.1
Nica, A.C.2
Forrest, M.S.3
Dimas, A.4
Bird, C.P.5
Beazley, C.6
Ingle, C.E.7
Dunning, M.8
Flicek, P.9
Koller, D.10
Montgomery, S.11
Tavare, S.12
Deloukas, P.13
Dermitzakis, E.T.14
-
25
-
-
70149112830
-
Tissue effect on genetic control of transcript isoform variation
-
Kwan, T., Grundberg, E., Koka, V., Ge, B., Lam, K., Dias, C., Kindmark, A., Mallmin, H., Ljunggren, O., Rivadeneira, F. et al. (2009) Tissue effect on genetic control of transcript isoform variation. PLoS Genet., 5, e1000608.
-
(2009)
PLoS Genet.
, vol.5
-
-
Kwan, T.1
Grundberg, E.2
Koka, V.3
Ge, B.4
Lam, K.5
Dias, C.6
Kindmark, A.7
Mallmin, H.8
Ljunggren, O.9
Rivadeneira, F.10
-
26
-
-
70350651269
-
Global patterns of cis variation in human cells revealed by high-density allelic expression analysis
-
Ge, B., Pokholok, D., Kwan, T., Grundberg, E., Morcos, L., Verlaan, D., Le, J., Koka, V., Lam, K., Gagné, V. et al. (2009) Global patterns of cis variation in human cells revealed by high-density allelic expression analysis. Nat. Genet., 41, 1216-1222.
-
(2009)
Nat. Genet.
, vol.41
, pp. 1216-1222
-
-
Ge, B.1
Pokholok, D.2
Kwan, T.3
Grundberg, E.4
Morcos, L.5
Verlaan Le, D.J.6
Koka, V.7
Lam, K.8
Gagné, V.9
-
27
-
-
74249100914
-
Fine-scale variation and genetic determinants of alternative splicing across individuals
-
Coulombe-Huntington, J., Lam, K., Dias, C. and Majewski, J. (2009) Fine-scale variation and genetic determinants of alternative splicing across individuals. PLoS Genet., 5, e1000766.
-
(2009)
PLoS Genet.
, vol.5
-
-
Coulombe-Huntington, J.1
Lam, K.2
Dias, C.3
Majewski, J.4
-
28
-
-
77949480756
-
Genomic features defining exonic variants that modulate splicing
-
Woolfe, A., Mullikin, J. and Elnitski, L. (2010) Genomic features defining exonic variants that modulate splicing. Genome Biol., 11, R20.
-
(2010)
Genome Biol.
, vol.11
-
-
Woolfe, A.1
Mullikin, J.2
Elnitski, L.3
-
29
-
-
19344367734
-
Single nucleotide polymorphism-based validation of exonic splicing enhancers
-
Fairbrother, W., Holste, D., Burge, C. and Sharp, P. (2004) Single nucleotide polymorphism-based validation of exonic splicing enhancers. PLoS Biol., 2, E268.
-
(2004)
PLoS Biol.
, vol.2
-
-
Fairbrother, W.1
Holste, D.2
Burge, C.3
Sharp, P.4
|