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Volumn 20, Issue 3, 2000, Pages 1063-1071

Exonic splicing enhancer motif recognized by human SC35 under splicing conditions

Author keywords

[No Author keywords available]

Indexed keywords

IMMUNOGLOBULIN M; RNA BINDING PROTEIN;

EID: 0033963336     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.20.3.1063-1071.2000     Document Type: Article
Times cited : (186)

References (45)
  • 1
    • 0028895417 scopus 로고
    • Exon recognition in vertebrate splicing
    • Berget, S. M. 1995. Exon recognition in vertebrate splicing. J. Biol. Chem. 270:2411-2414.
    • (1995) J. Biol. Chem. , vol.270 , pp. 2411-2414
    • Berget, S.M.1
  • 2
    • 0029382603 scopus 로고
    • Finding splice sites within a wilderness of RNA
    • Black, D. L. 1995. Finding splice sites within a wilderness of RNA. RNA 1:763-771.
    • (1995) RNA , vol.1 , pp. 763-771
    • Black, D.L.1
  • 3
    • 0001468848 scopus 로고    scopus 로고
    • Splicing of precursors to mRNAs by the spliceosomes
    • R. F. Gesteland, T. R. Cech, and J. F. Atkins (ed.). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
    • Burge, C. B., T. Tuschl, and P. A. Sharp. 1999. Splicing of precursors to mRNAs by the spliceosomes, p. 525-559. In R. F. Gesteland, T. R. Cech, and J. F. Atkins (ed.), The RNA world, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
    • (1999) The RNA World, 2nd Ed. , pp. 525-559
    • Burge, C.B.1    Tuschl, T.2    Sharp, P.A.3
  • 4
    • 0030585734 scopus 로고    scopus 로고
    • Evaluation of gene structure prediction programs
    • Burset, M., and R. Guigo. 1996. Evaluation of gene structure prediction programs. Genomics 34:353-367.
    • (1996) Genomics , vol.34 , pp. 353-367
    • Burset, M.1    Guigo, R.2
  • 5
    • 0028077730 scopus 로고
    • Regulation of alternative splicing in vivo by overexpression of antagonistic splicing factors
    • Cáceres, J. F., S. Stamm, D. M. Helfman, and A. R. Krainer. 1994. Regulation of alternative splicing in vivo by overexpression of antagonistic splicing factors. Science 265:1706-1709.
    • (1994) Science , vol.265 , pp. 1706-1709
    • Cáceres, J.F.1    Stamm, S.2    Helfman, D.M.3    Krainer, A.R.4
  • 6
    • 0030891302 scopus 로고    scopus 로고
    • RNA splicing specificity determined by the coordinated action of RNA recognition motifs in SR proteins
    • Chandler, S. D., A. Mayeda, J. M. Yeakley, A. R. Krainer, and X.-D. Fu. 1997. RNA splicing specificity determined by the coordinated action of RNA recognition motifs in SR proteins. Proc. Natl. Acad. Sci. USA 94:3596-3601.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 3596-3601
    • Chandler, S.D.1    Mayeda, A.2    Yeakley, J.M.3    Krainer, A.R.4    Fu, X.-D.5
  • 7
    • 0032873673 scopus 로고    scopus 로고
    • Evidence for the function of an exonic splicing enhancer after the first catalytic step of pre-mRNA splicing
    • Chew, S. L., H.-L. Liu, A. Mayeda, and A. R. Krainer. 1999. Evidence for the function of an exonic splicing enhancer after the first catalytic step of pre-mRNA splicing. Proc. Natl. Acad. Sci. USA 96:10655-10660.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 10655-10660
    • Chew, S.L.1    Liu, H.-L.2    Mayeda, A.3    Krainer, A.R.4
  • 8
    • 0029006578 scopus 로고
    • A two-step mechanism for 5′ and 3′ splice-site pairing
    • Chiara, M. D., and R. Reed. 1995. A two-step mechanism for 5′ and 3′ splice-site pairing. Nature 375:510-513.
    • (1995) Nature , vol.375 , pp. 510-513
    • Chiara, M.D.1    Reed, R.2
  • 9
    • 0030988942 scopus 로고    scopus 로고
    • Identification of a new class of exonic splicing enhancers by in vivo selection
    • Erratum, 17:3468
    • Coulter, L. R., M. A. Landree, and T. A. Cooper. 1997. Identification of a new class of exonic splicing enhancers by in vivo selection. Mol. Cell. Biol. 17:2143-2150. (Erratum, 17:3468.)
    • (1997) Mol. Cell. Biol. , vol.17 , pp. 2143-2150
    • Coulter, L.R.1    Landree, M.A.2    Cooper, T.A.3
  • 10
    • 0024452160 scopus 로고
    • Alterations in the poly-pyrimidine sequence affect the in vitro splicing reactions catalyzed by HeLa cell-free preparations
    • Freyer, G. A., J. P. O'Brien, and J. Hurwitz. 1989. Alterations in the poly-pyrimidine sequence affect the in vitro splicing reactions catalyzed by HeLa cell-free preparations. J. Biol. Chem. 264:14631-14637.
    • (1989) J. Biol. Chem. , vol.264 , pp. 14631-14637
    • Freyer, G.A.1    O'Brien, J.P.2    Hurwitz, J.3
  • 11
    • 0025827463 scopus 로고
    • Primary structure of the human splicing factor ASF reveals similarities with drosophila regulators
    • Ge, H., P. Zuo, and J. L. Manley. 1991. Primary structure of the human splicing factor ASF reveals similarities with Drosophila regulators. Cell 66: 373-382.
    • (1991) Cell , vol.66 , pp. 373-382
    • Ge, H.1    Zuo, P.2    Manley, J.L.3
  • 12
    • 0029935065 scopus 로고    scopus 로고
    • Interactions among SR proteins, an exonic splicing enhancer, and a lentivirus Rev protein regulate alternative splicing
    • Gontarek, R. R., and D. Derse. 1996. Interactions among SR proteins, an exonic splicing enhancer, and a lentivirus Rev protein regulate alternative splicing. Mol. Cell. Biol. 16:2325-2331.
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 2325-2331
    • Gontarek, R.R.1    Derse, D.2
  • 13
    • 0031473030 scopus 로고    scopus 로고
    • Displaying the information contents of structural RNA alignments: The structure logos
    • Gorodkin, J., L. J. Heyer, S. Brunak, and G. D. Stormo. 1997. Displaying the information contents of structural RNA alignments: the structure logos. Comput. Appl. Biosci. 13:583-586.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 583-586
    • Gorodkin, J.1    Heyer, L.J.2    Brunak, S.3    Stormo, G.D.4
  • 14
    • 0344074646 scopus 로고    scopus 로고
    • Regulated tissue-specific expression of antagonistic pre-mRNA splicing factors
    • Hanamura, A., J. F. Cáceres, A. Mayeda, B. R. Franza, Jr., and A. R. Krainer. 1998. Regulated tissue-specific expression of antagonistic pre-mRNA splicing factors. RNA 4:430-444.
    • (1998) RNA , vol.4 , pp. 430-444
    • Hanamura, A.1    Cáceres, J.F.2    Mayeda, A.3    Franza B.R., Jr.4    Krainer, A.R.5
  • 15
    • 0033557806 scopus 로고    scopus 로고
    • Pre-mRNA splicing of IgM exons M1 and M2 is directed by a juxtaposed splicing enhancer and inhibitor
    • Ran, J. L., and M. R. Green. 1999. Pre-mRNA splicing of IgM exons M1 and M2 is directed by a juxtaposed splicing enhancer and inhibitor. Genes Dev. 13:462-471.
    • (1999) Genes Dev. , vol.13 , pp. 462-471
    • Ran, J.L.1    Green, M.R.2
  • 17
    • 0025743575 scopus 로고
    • Functional expression of cloned human splicing factor SF2: Homology to RNA-binding proteins, U1 70K, and Drosophila splicing regulators
    • Krainer, A. R., A. Mayeda, D. Kozak, and G. Binns. 1991. Functional expression of cloned human splicing factor SF2: homology to RNA-binding proteins, U1 70K, and Drosophila splicing regulators. Cell 66:383-394.
    • (1991) Cell , vol.66 , pp. 383-394
    • Krainer, A.R.1    Mayeda, A.2    Kozak, D.3    Binns, G.4
  • 18
    • 0027143943 scopus 로고
    • A splicing enhancer in the human fibronectin alternate ED1 exon interacts with SR proteins and stimulates U2 snRNP binding
    • Lavigueur, A., H. La Branche, A. R. Kornblihtt, and B. Chabot. 1993. A splicing enhancer in the human fibronectin alternate ED1 exon interacts with SR proteins and stimulates U2 snRNP binding. Genes Dev. 7:2405-2417.
    • (1993) Genes Dev. , vol.7 , pp. 2405-2417
    • Lavigueur, A.1    La Branche, H.2    Kornblihtt, A.R.3    Chabot, B.4
  • 19
    • 0027912333 scopus 로고
    • Detecting subtle sequence signals: A Gibbs sampling strategy for multiple alignment
    • Lawrence, C. E., S. F. Altschul, M. S. Boguski, J. S. Liu, A. F. Neuwald, and J. C. Wootton. 1993. Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment. Science 262:208-214.
    • (1993) Science , vol.262 , pp. 208-214
    • Lawrence, C.E.1    Altschul, S.F.2    Boguski, M.S.3    Liu, J.S.4    Neuwald, A.F.5    Wootton, J.C.6
  • 20
    • 0032128255 scopus 로고    scopus 로고
    • Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins
    • Liu, H.-X., M. Zhang, and A. R. Krainer. 1998. Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12:1998-2012.
    • (1998) Genes Dev. , vol.12 , pp. 1998-2012
    • Liu, H.-X.1    Zhang, M.2    Krainer, A.R.3
  • 21
    • 0029858338 scopus 로고    scopus 로고
    • Assembly of specific SR protein complexes on distinct regulatory elements of the Drosophila doublesex splicing enhancer
    • Lynch, K. W., and T. Maniatis. 1996. Assembly of specific SR protein complexes on distinct regulatory elements of the Drosophila doublesex splicing enhancer. Genes Dev. 10:2089-2101.
    • (1996) Genes Dev. , vol.10 , pp. 2089-2101
    • Lynch, K.W.1    Maniatis, T.2
  • 22
    • 0027151934 scopus 로고
    • Modulation of exon skipping and inclusion by heterogeneous nuclear ribonucleoprotein A1 and pre-mRNA splicing factor SF2/ASF
    • Erratum, 13:4458
    • Mayeda, A., D. M. Helfman, and A. R. Krainer. 1993. Modulation of exon skipping and inclusion by heterogeneous nuclear ribonucleoprotein A1 and pre-mRNA splicing factor SF2/ASF. Mol. Cell. Biol. 13:2993-3001. (Erratum, 13:4458.)
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 2993-3001
    • Mayeda, A.1    Helfman, D.M.2    Krainer, A.R.3
  • 23
    • 0032648206 scopus 로고    scopus 로고
    • Preparation of Hela cell nuclear and cytosolic S100 extracts for in vitro splicing
    • Mayeda, A., and A. R. Krainer. 1999. Preparation of Hela cell nuclear and cytosolic S100 extracts for in vitro splicing. Methods Mol. Biol. 118:309-314.
    • (1999) Methods Mol. Biol. , vol.118 , pp. 309-314
    • Mayeda, A.1    Krainer, A.R.2
  • 24
    • 0032623342 scopus 로고    scopus 로고
    • Mammalian in vitro splicing assays
    • Mayeda, A., and A. R. Krainer. 1999. Mammalian in vitro splicing assays. Methods Mol. Biol. 118:315-322.
    • (1999) Methods Mol. Biol. , vol.118 , pp. 315-322
    • Mayeda, A.1    Krainer, A.R.2
  • 25
    • 0026543785 scopus 로고
    • Regulation of alternative pre-mRNA splicing by hnRNP A1 and splicing factor SF2
    • Mayeda, A., and A. R. Krainer. 1992. Regulation of alternative pre-mRNA splicing by hnRNP A1 and splicing factor SF2. Cell 68:365-375.
    • (1992) Cell , vol.68 , pp. 365-375
    • Mayeda, A.1    Krainer, A.R.2
  • 26
    • 0033013977 scopus 로고    scopus 로고
    • Substrate specificities of SR proteins in constitutive splicing are determined by their RNA recognition motifs and composite pre-mRNA exonic elements
    • Mayeda, A., G. R. Screaton, S. D. Chandler, X.-D. Fu, and A. R. Krainer. 1999. Substrate specificities of SR proteins in constitutive splicing are determined by their RNA recognition motifs and composite pre-mRNA exonic elements. Mol. Cell. Biol. 19:1853-1863.
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 1853-1863
    • Mayeda, A.1    Screaton, G.R.2    Chandler, S.D.3    Fu, X.-D.4    Krainer, A.R.5
  • 27
    • 0029144216 scopus 로고
    • A subset of SR proteins activates splicing of the cardiac troponin T alternative exon by direct interactions with an exonic enhancer
    • Ramchatesingh, J., A. M. Zahler, K. M. Neugebauer, M. B. Roth, and T. A. Cooper. 1995. A subset of SR proteins activates splicing of the cardiac troponin T alternative exon by direct interactions with an exonic enhancer. Mol. Cell. Biol. 15:4898-4907.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 4898-4907
    • Ramchatesingh, J.1    Zahler, A.M.2    Neugebauer, K.M.3    Roth, M.B.4    Cooper, T.A.5
  • 28
    • 0032947182 scopus 로고    scopus 로고
    • Multiple distinct splicing enhancers in the protein-coding sequences of a constitutively spliced pre-mRNA
    • Schaal, T. D., and T. Maniatis. 1999. Multiple distinct splicing enhancers in the protein-coding sequences of a constitutively spliced pre-mRNA. Mol. Cell. Biol. 19:261-273.
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 261-273
    • Schaal, T.D.1    Maniatis, T.2
  • 29
    • 0033019048 scopus 로고    scopus 로고
    • Selection and characterization of pre-mRNA splicing enhancers: Identification of novel SR protein-specific enhancer sequences
    • Schaal, T. D., and T. Maniatis. 1999. Selection and characterization of pre-mRNA splicing enhancers: identification of novel SR protein-specific enhancer sequences. Mol. Cell. Biol. 19:1705-1719.
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 1705-1719
    • Schaal, T.D.1    Maniatis, T.2
  • 31
    • 0018801111 scopus 로고
    • BKV splice sequences based on analysis of preferred donor and acceptor sites
    • Seif, I., G. Khoury, and R. Dhar. 1979. BKV splice sequences based on analysis of preferred donor and acceptor sites. Nucleic Acids Res. 6:3387-3398.
    • (1979) Nucleic Acids Res. , vol.6 , pp. 3387-3398
    • Seif, I.1    Khoury, G.2    Dhar, R.3
  • 32
    • 0028006713 scopus 로고
    • SR proteins promote the first specific recognition of pre-mRNA and are present together with the U1 small nuclear ribonucleoprotein particle in a general splicing enhancer complex
    • Staknis, D., and R. Reed. 1994. SR proteins promote the first specific recognition of pre-mRNA and are present together with the U1 small nuclear ribonucleoprotein particle in a general splicing enhancer complex. Mol. Cell. Biol. 14:7670-7682.
    • (1994) Mol. Cell. Biol. , vol.14 , pp. 7670-7682
    • Staknis, D.1    Reed, R.2
  • 33
    • 0025342573 scopus 로고
    • Consensus patterns in DNA
    • Stormo, G. D. 1990. Consensus patterns in DNA. Methods Enzymol. 183: 211-237.
    • (1990) Methods Enzymol. , vol.183 , pp. 211-237
    • Stormo, G.D.1
  • 34
    • 0027715743 scopus 로고
    • General splicing factor SF2/ASF promotes alternative splicing by binding to an exonic splicing enhancer
    • Sun, Q., A. Mayeda, R. K. Hampson, A. R. Krainer, and F. M. Rottman. 1993. General splicing factor SF2/ASF promotes alternative splicing by binding to an exonic splicing enhancer. Genes Dev. 7:2598-2608.
    • (1993) Genes Dev. , vol.7 , pp. 2598-2608
    • Sun, Q.1    Mayeda, A.2    Hampson, R.K.3    Krainer, A.R.4    Rottman, F.M.5
  • 35
    • 0029064220 scopus 로고
    • The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities
    • Tacke, R., and J. L. Manley. 1995. The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14:3540-3551.
    • (1995) EMBO J. , vol.14 , pp. 3540-3551
    • Tacke, R.1    Manley, J.L.2
  • 36
    • 0028805223 scopus 로고
    • Selection of novel exon recognition elements from a pool of random sequences
    • Tian, H., and R. Kole. 1995. Selection of novel exon recognition elements from a pool of random sequences. Mol. Cell. Biol. 15:6291-6298.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 6291-6298
    • Tian, H.1    Kole, R.2
  • 37
    • 0027185151 scopus 로고
    • A splicing enhancer complex controls alternative splicing of doublesex pre-mRNA
    • Tian, M., and T. Maniatis. 1993. A splicing enhancer complex controls alternative splicing of doublesex pre-mRNA. Cell 74:105-114.
    • (1993) Cell , vol.74 , pp. 105-114
    • Tian, M.1    Maniatis, T.2
  • 38
    • 0028025033 scopus 로고
    • A splicing enhancer exhibits both constitutive and regulated activities
    • Tian, M., and T. Maniatis. 1994. A splicing enhancer exhibits both constitutive and regulated activities. Genes Dev. 8:1703-1712.
    • (1994) Genes Dev. , vol.8 , pp. 1703-1712
    • Tian, M.1    Maniatis, T.2
  • 39
    • 0027288912 scopus 로고
    • The role of exon sequences in splice site selection
    • Watakabe, A., K. Tanaka, and Y. Shimura. 1993. The role of exon sequences in splice site selection. Genes Dev. 7:407-418.
    • (1993) Genes Dev. , vol.7 , pp. 407-418
    • Watakabe, A.1    Tanaka, K.2    Shimura, Y.3
  • 40
    • 0024465787 scopus 로고
    • A secondary structure at the 3′ splice site affects the in vitro splicing reaction of mouse immunoglobulin μ chain pre-mRNAs
    • Watakabe, A., K. Inoue, H. Sakamoto, and Y. Shimura. 1989. A secondary structure at the 3′ splice site affects the in vitro splicing reaction of mouse immunoglobulin μ chain pre-mRNAs. Nucleic Acids Res. 17:8159-8169.
    • (1989) Nucleic Acids Res. , vol.17 , pp. 8159-8169
    • Watakabe, A.1    Inoue, K.2    Sakamoto, H.3    Shimura, Y.4
  • 41
    • 0027137934 scopus 로고
    • Specific interactions between proteins implicated in splice site selection and regulated alternative splicing
    • Wu, J. Y., and T. Maniatis. 1993. Specific interactions between proteins implicated in splice site selection and regulated alternative splicing. Cell 75:1061-1070.
    • (1993) Cell , vol.75 , pp. 1061-1070
    • Wu, J.Y.1    Maniatis, T.2
  • 42
    • 0027175502 scopus 로고
    • The cardiac troponin T alternative exon contains a novel purine-rich positive splicing element
    • Xu, R., J. Teng, and T. A. Cooper. 1993. The cardiac troponin T alternative exon contains a novel purine-rich positive splicing element. Mol. Cell. Biol. 13:3660-3674.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 3660-3674
    • Xu, R.1    Teng, J.2    Cooper, T.A.3
  • 43
    • 0027160003 scopus 로고
    • Distinct functions of SR proteins in alternative pre-mRNA splicing
    • Zahler, A. M., K. M. Nengebauer, W. S. Lane, and M. B. Roth. 1993. Distinct functions of SR proteins in alternative pre-mRNA splicing. Science 260:219-222.
    • (1993) Science , vol.260 , pp. 219-222
    • Zahler, A.M.1    Nengebauer, K.M.2    Lane, W.S.3    Roth, M.B.4
  • 44
    • 0002862339 scopus 로고
    • UACUAAC is the preferred branch site for mammalian mRNA splicing
    • Zhuang, Y. A., A. M. Goldstein, and A. M. Weiner. 1989. UACUAAC is the preferred branch site for mammalian mRNA splicing. Proc. Natl. Acad. Sci. USA 86:2752-2756.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 2752-2756
    • Zhuang, Y.A.1    Goldstein, A.M.2    Weiner, A.M.3
  • 45
    • 0029665533 scopus 로고    scopus 로고
    • The splicing factor U2AF35 mediates critical protein-protein interactions in constitutive and enhancer-dependent splicing
    • Zuo, P., and T. Maniatis. 1996. The splicing factor U2AF35 mediates critical protein-protein interactions in constitutive and enhancer-dependent splicing. Genes Dev. 10:1356-1368.
    • (1996) Genes Dev. , vol.10 , pp. 1356-1368
    • Zuo, P.1    Maniatis, T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.