TMPIT1 from wild emmer wheat: First characterisation of a stress-inducible integral membrane protein

Gene

Volumn 483, Issue 1-2, 2011, Pages 22-28

  Lucas, Stuart ^a   Dogan, Esen ^a   Budak, Hikmet ^a  

^a SABANCI UNIVERSITY   (Turkey)

Author keywords

Cellular localisation; Drought stress; TdicTMPIT1; Transmembrane protein; Triticum turgidum subsp. dicoccoides

Indexed keywords

ENHANCED GREEN FLUORESCENT PROTEIN; MEMBRANE PROTEIN; STRESS INDUCIBLE INTEGRAL MEMBRANE PROTEIN; TUMOR NECROSIS FACTOR ALPHA; UNCLASSIFIED DRUG;

ARTICLE; CELLULAR DISTRIBUTION; CONFOCAL LASER MICROSCOPY; CONTROLLED STUDY; DROUGHT STRESS; ESCHERICHIA COLI; GENOTYPE; MOLECULAR CLONING; NONHUMAN; PLANT ROOT; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; REAL TIME POLYMERASE CHAIN REACTION; SACCHAROMYCES CEREVISIAE; SEQUENCE ANALYSIS; WHEAT;

BASE SEQUENCE; DROUGHTS; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; MEMBRANE PROTEINS; MOLECULAR SEQUENCE DATA; PLANT ROOTS; SEQUENCE ALIGNMENT; STRESS, PHYSIOLOGICAL; TRITICUM;

ESCHERICHIA COLI; SACCHAROMYCES CEREVISIAE; TRITICUM AESTIVUM; TRITICUM TURGIDUM SUBSP. DICOCCOIDES; TRITICUM TURGIDUM SUBSP. DURUM;

EID: 79960201971     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2011.05.003     Document Type: Article

References (19)

1. Budak H., Kasap Z., Shearman R.C., Dweikat I., Sezerman U., Mahmood A. Molecular characterization of cDNA encoding resistance gene-like sequences in Buchloe dactyloides. Mol. Biotechnol. 2006, 34:293-301.
2. Budak H., Su Y., Ergen N. Revealing constitutively expressed resistance genes in Agrostis species using PCR-based motif-directed RNA fingerprinting. Genet. Res. 2006, 88:165-175.
3. Cebeci O., Kokturk B., Ergen N., Ozturk L., Cakmak I., Budak H. Differential expression of wheat transcriptomes in response to varying cadmium concentrations. Biol. Plant. 2008, 52:703-708.
4. Chou K.-C., Shen H.-B. Large-scale plant protein subcellular location prediction. J. Cell. Biochem. 2007, 100:665-678.
5. Chou K.-C., Shen H.-B. Plant-mPLoc: a top-down strategy to augment the power for predicting plant protein subcellular localization. PLoS ONE 2010, 5:e11335.
6. Drew D., Newstead S., Sonoda Y., Kim H., von Heijne G., Iwata S. GFP-based optimization scheme for the overexpression and purification of eukaryotic membrane proteins in Saccharomyces cerevisiae. Nat. Protoc. 2008, 3:784-798.
7. Ergen N.Z., Budak H. Sequencing over 13,000 expressed sequence tags from six subtractive cDNA libraries of wild and modern wheats following slow drought. Plant Cell Environ. 2009, 32:220-236.
8. Ergen N.Z., Thimmapuram J., Bohnert H.J., Budak H. Transcriptome pathways unique to dehydration tolerant relatives of modern wheat. Funct. Integr. Genomics 2009, 9:377-396.
9. Hofmann K., Stoffel W. TMbase-a database of membrane spanning proteins segments. Biol. Chem. Hoppe Seyler 1993, 374:166.
10. Larkin M.A., et al. ClustalW and ClustalX version 2.0. Bioinformatics 2007, 23:2947-2948.
11. Lucas S.J., Durmaz E., Akpinar B.A., Budak H. The drought response displayed by a DRE-binding protein from Triticum dicoccoides. Plant Physiol. Biochem. 2011, 49:346-351.
12. Marchler-Bauer A., et al. CDD: specific functional annotation with the Conserved Domain Database. Nucleic Acids Res. 2009, 37:205-210.
13. Neufeld H.S., Chappelka A.H., Somers G.L., Burkey K.O., Davison A.W., Finkelstein P.L. Visible foliar injury caused by ozone alters the relationship between SPAD meter readings and chlorophyll concentrations in cutleaf coneflower. Photosynth. Res. 2006, 87:281-286.
14. Pffafl M.W. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res. 2001, 29:2002-2007.
15. Sambrook J., Russell D. Molecular Cloning: A Laboratory Manual 2001, Cold Spring Harbor Laboratory Press, Woodbury, NY, USA. third ed.
16. Sayed O.H. Chlorophyll fluorescence as a tool in cereal crop research. Photosynthetica 2003, 41:321-330.
17. Stelzl U., et al. A human protein-protein interaction network: a resource for annotating the proteome. Cell 2005, 122:957-968.
18. Tanksley S.D., McCouch S.M. Seed banks and molecular maps: unlocking genetic potential from the wild. Science 1997, 277:1063-1066.
19. Tusnady G.E., Simon I. The HMMTOP transmembrane topology prediction server. Bioinformatics 2001, 17:849-850.