Molecular characterization of cDNA encoding resistance gene-like sequences in Buchloe dactyloides

Molecular Biotechnology

Volumn 34, Issue 3, 2006, Pages 293-301

  Budak, Hikmet ^a   Kasap, Zeynep ^a   Shearman, Robert C ^b   Dweikat, Ismail ^b   Sezerman, Ugur ^a   Mahmood, Abid ^b  

^a SABANCI UNIVERSITY   (Turkey)

^b UNIVERSITY OF NEBRASKA LINCOLN   (United States)

Author keywords

Buffalograss; cDNA; Molecular evolution; RACE; Resistance genes

Indexed keywords

BUFFALOGRASS; CDNA; MOLECULAR EVOLUTION; RESISTANCE GENES;

AMINO ACIDS; BIOMARKERS; CLONING; DNA SEQUENCES; GENES; MOLECULAR STRUCTURE;

PLANTS (BOTANY);

COMPLEMENTARY DNA; PROTEIN DERIVATIVE; PROTEIN L6; PROTEIN MLA6; PROTEIN RMP1; PROTEIN RPS2; PROTEIN XA1; RESISTANCE PROTEIN; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; BUCHLOE DACTYLOIDES; DNA SEQUENCE; GENE AMPLIFICATION; GENE ISOLATION; GENE SEQUENCE; GENETIC ANALYSIS; GRASS; MARKER GENE; MOLECULAR CLONING; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT DISEASE; PROTEIN FUNCTION; REGULATORY SEQUENCE; SEQUENCE ANALYSIS; TATA BOX;

AMINO ACID SEQUENCE; CLONING, MOLECULAR; DNA PRIMERS; DNA, COMPLEMENTARY; DNA, PLANT; EVOLUTION, MOLECULAR; GENE AMPLIFICATION; GENES, PLANT; GENES, REGULATOR; GENETIC MARKERS; IMMUNITY, NATURAL; MOLECULAR SEQUENCE DATA; PLANT DISEASES; POACEAE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID;

BUCHLOE; BUCHLOE DACTYLOIDES;

EID: 33846853709     PISSN: 10736085     EISSN: None     Source Type: Journal    
DOI: 10.1385/MB:34:3:293     Document Type: Article

References (55)

1. Wenger, L. E. (1943) Buffalograss. Kansas Agr. Expt. Sta. Bul. 321, 1-78.
2. Beard, J. B. (1973) Turfgrass: science and culture. Prentice-Hall, Englewood Cliffs, NJ.
3. Riordan, T. (1991). Buffalograss. Grounds Maint. 26, 12-14.
4. Baxendale, F. P., Heng-Moss, T. M., and Riordan, T. P. (1999) Blissus occiduus (Hemiptera: Lygaeidae): a chinch bug pest new to buffalograss turf. J. Econ. Entomol. 92, 1172-1176.
5. Johnson-Cicalese, J. M., Baxendale, F. P., Riordan, T. P., and Heng-Moss, T. M. (1998) Identification of mealybug (Homoptera: Pseudococcidae) resistant turf-type buffalograss germplasm. J. Econ. Entomol. 91, 340-346.
6. Schuler, T. H. and Poppy, G. M. (1998) Insect-resistant transgenic plants. Tibtech 16, 168-175.
7. Budak, H., Shearman, R. C., and Dweikat, I. (2004) Cloning and characterization of resistance gene like sequences in warm season turfgrass species. Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Science, Las Vegas, NV, pp. 225-230.
8. Flor, H. H. (1971) Current status of the gene for gene concept. Annu. Rev. Phytopathol. 9, 275-296.
9. Keen, N. T. (1990) Gene-for-gene complimentary in plant-pathogen interactions. Annu. Rev. Genet. 24, 447-463.
10. Islam, M. R. and Mayo, G. M. E. (1990) A compendium on host genes in flax conferring resistance to flax rust. Plant Breeding 104, 89-100.
11. Islam, M. R. and Shepherd, K. W. (1991) Present status of genetic of rust resistance in flax. Euphytica 55, 255-268.
12. Hulbert, S. H., Webb, C. A., Smith, S. M., and Sun, Q. (2001) Resistance gene complexes: evolution and utilization. Annu. Rev. Phytopathol. 39, 285-312.
13. Hammond-Kosack K. and Jones, J. (1997) Plant disease resistance genes. Annu. Rev. Plant Physiol. Plant Mol. Biol. 48, 575-608.
14. Richter, T. E. and Ronald, P. C. (2000) The evolution of disease resistance genes. Plant Mol. Biol. 42, 195-204.
15. Baker, B., Zambryski, P., Staskawicz, B., and Dinesh-Kumar, S. P. (1997) Signaling in plant-microbe interactions. Science 276, 726-733.
16. Saraste, M., Sibbald, P. R., and Wittinghofer, A. (1990) The P-loop - a common motif in ATP- and GTP-binding proteins. Trends Biochem. Sci. 15, 430-434.
17. Tameling, W. I., Elzinga, S. D., Darmin, P. S., et al. (2002) The tomato R gene products I-2 and MI-1 are functional ATP binding proteins with ATPase activitiy. Plant Cell 14, 2929-2939.
18. Jones, D. A. and Jones, J. D. G. (1997) The role of leucine-rich repeats proteins in plant defenses. Adv. Bot. Res. 24, 89-167.
19. Kajava, A. V. (1998) Structural diversity of leucine-rich repeat proteins. J. Mol. Biol. 277, 519-527.
20. Liu, J. J. and Ekramoddoullah, A. K. M. (2003) Isolation, genetic variation and expression of TIR-NBS-LRR resistance gene analogs from western white pine (Pinus monticola Dougl. ex. D. Don.). Mol. Gen. Genomics 270, 432-441.
21. Meyers, B. C., Dickerman, A. W., Michelmore, R. W., Sivaramakrishnan, S., Sobral, B. W., and Young, N. D. (1999) Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily. Plant J. 20, 317-332.
22. Pan, Q., Liu, Y. S., Budai-Hadrian, O., et al. (2000) Comparative genetics of nucleotide binding site-leucine rich repeat resistance gene homologues in the genomes of two dicotyledons: tomato and Arabidopsis. Genetics 155, 309-322.
23. Cannon, S. B., Zhu, H., Baumgarten, A. M., Spangler, R., May, G., Cook, D. R., and Young, N. D. (2002) Diversity, distribution, and ancient taxonomic relationships within the TIR and non-TIR NBS-LRR resistance gene subfamilies. J. Mol. Evol. 54, 548-562.
24. Donald, T. M., Pellerone, F., Adam-Blondon, A-F, Boquet, A., Thomas, M. R., and Dry, I. B. (2002) Identification of resistance gene analogs linked to a powdery mildew resistance locus in grapevine. Theor. Appl. Genet. 104, 610-618.
25. Kanazin, V., Marek, L. F., and Shoemaker, R. C. (1996) Resistance gene analogs are conserved and clustered in soybean. Proc. Nat. Acad. Sci. USA 93, 11746-11750.
26. Yu Y. G., Bussand G. R., and Maroof, M. A. (1996) Isolation of a superfamily of candidate disease-resistance genes in soybean based on a conserved nucleotide-binding site. Proc. Natl. Acad. Sci. USA 93, 11,751-11,756.
27. Reeder, J. R. (1971) Notes on Mexican grasses. IX. Miscellaneous chromosome numbers. Brittonia 23, 105-117.
28. Huff, D. R., Peakall, R., and Smouse, P. E. (1993) RAPD variation within and among natural populations of outcrossing buffalograss [Buchloe dactyloides (Nutt.) Engelm.]. Theor. Appl. Genet. 86, 927-934.
29. Johnson, P. G., Riordan, T. P., and Arumuganathan, K. (1998) Ploidy level determinations in buffalograss clones and populations. Crop Sci. 38, 478-482.
30. Johnson, P. G. and Riordan, T. P. (2001) Effect of unbalanced chromosome number and inbreeding on fertility and plant vigor in buffalograss. Intl. Turf. Res. J. 9, 176-179.
31. Budak, H., Shearman, R. C., Parmaksiz, I., Gaussoin, R. E., Riordan, T. P., and Dweikat, I. (2004) Molecular characterization of buffalograss germplasm using sequence related amplified polymorphism markers. Theor. Appl. Genet. 108, 328-334.
32. Budak, H., Shearman, R. C., Parmaksiz, I., and Dweikat, I. (2004) Comparative analysis of seeded and vegetative biotype buffalograsses based on phylogenetic relationship using using ISSRs, SSRs, RAPDs, SRAPs. Theor. Appl. Genet. 109, 280-288.
33. Altschul, S. F., Madden, T. L., Schaffer, A. A., et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
34. Budak, H., Shearman, R. C., and Dweikat, I. (2005) Comparative sequence analysis to identify functional elements for functional genomics. Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Science, Las Vegas, NV, pp. 3-7.
35. Traut, T. W. (1994) The functions and consensus motifs of nine types of peptide segments that form different types of nucleotide binding sites. Eur. J. Biochem. 222, 9-19.
36. Kinoshita, K., Sdanami, K., Kidera, A., and Go, N. (1999) Structural motif of phosphate binding site common to various protein super families: all against all structural comparison of protein mononucleotide complexes. Protein Eng. 12, 11-14.
37. Meyers, B. C., Kozik, A., Griego, A., Kuang, H., and Michelmore, R. W. (2003) Genome wide analysis of NBS-LRR encoding genes in Arabidopsis. Plant Cell 15, 809-834.
38. Parniske, M., Hammond-Kossack, K. E., Golstein, C., et al. (1997) Novel disease resistance specificities result from the sequence exchange between tandemly repeated genes at the Cf-4/9 locus of tomato. Cell 91, 821-832.
39. Song, W. Y., Pi, L. Y., Wang, G. L., Gardner, J., Holsten, T., and Ronal, P. C. (1997) Evolution of the rice Xa21 disease resistance gene family. Plant Cell 9, 1279-1287.
40. Meyers, B. C., Shen, K. A., Rohani, P., Gaut, B., and Michelmore, R. W. (1998) Receptor like genes in the major resistance locus of lettuce are subject to divergent selection. Plant Cell 10, 1833-1846.
41. Shen, K. A., Chin, D. B., Arroyo-Garcia, R., Ochoa, O. E., and Lavelle, D. O. (2002) Dm3 is one member of a large constituvely expressed family of nucleotide binding site-leucine rich repeat encoding genes. Mol. Plant Microbe Interact. 15, 251-261.
42. Seah, S., Bariana, H., Jahier, J., Sivasithamparam, K., and Lagudah, E. S. (2001) Cloning and characterization a family of disease resistance gene analogs from wheat and barley. Theor. Appl. Genet. 97, 937-945.
43. Zhang, L. P., Khan, A., Nino-Liu, D., and Foolad, M. R. (2002) A molecular linkage map of tomato displaying chromosomal locations of resistance gene analogs based on a Lycopersicon esculantum x Lycopersicon hirsutum cross. Genome 45, 133-146.
44. Lopez, C. E., Acosta, I. F., Jara, C., et al. (2003) Identifying resistance gene analogs associated with the resistance to different pathogens in common bean. Phytopathology 93, 88-95.
45. Ramalingam, J., Vera-Cruz, C. M., Kukreja, K., et al. (2003) Candidate defense genes from rice, barley and maize and their association with qualitative and quantitative resistance in rice. Mol. Plant Microbe Interact. 16, 14-24.
46. Lagudah, E. S., Moullet, O., and Appels, R. (1997) Map-based cloning of a gene sequence encoding a nucleotide-binding domain and a leucine-rich region at the Cre3 nematode resistance locus of wheat. Genome 40, 659-665.
47. Halterman, D., Zhou, D., Wei, F., Wise, R. P., and Schulze-Lefert, P. (2001) The MLA6 coiled-coil, NBS-LRR protein confers AvrMla6-dependent resistance specificity to Blumeria graminis f. sp. hordei in barley and wheat. Plant J. 25, 335-348.
48. Yoshimura, S., Yamanouchi, U., Katayose, Y., et al. (1998) Expression of Xa1, a bacterial blight-resistance gene in rice, is induced by bacterial inoculation. Proc. Natl. Acad. Sci. USA 95, 1663-1668.
49. Sakamoto, K., Tada, Y., Yokozeki, Y., et al. (1999) Chemical induction of disease resistance in rice is correlated with the expression of a gene encoding a nucleotide binding site and leucine-rich repeats. Plant Mol. Biol. 40, 847-855.
50. Botella, M. A., Coleman, M. J., Hughes, D. E., Nishimura, M. T., Jones, J. D., and Somerville, S. C. (1997) Map positions of 47 Arabidopsis sequences with sequence similarity to disease resistance genes. Plant J. 12, 1197-1211.
51. Bent, A. F., Kunkel, B. N., Dahlbeck, D., et al. (1994) RPS2 of Arabidopsis thaliana: a leucine-rich repeat class of plant disease resistance genes. Science 265, 1856-1860.
52. Warren, R. F., Henk A., Mowery P., Holub, E., and Innes R. W. (1998) A mutation within the leucine-rich repeat domain of the Arabidopsis disease resistance gene RPS5 partially suppresses multiple bacterial and downy mildew resistance genes. Plant Cell 10, 1439-1452.
53. McDowell, J. M., Dhandaydham, M., Long, T. A., et al. (1998) Intragenic recombination and diversifying selection contribute to the evolution of downy mildew resistance at the RPP8 locus of Arabidopsis. Plant Cell 10, 1861-1874.
54. Grant, M. R., Godiard, L., Straube, E., et al. (1995) Structure of the Arabidopsis RPM1 gene enabling dual specificity disease resistance. Science 269, 843-846.
55. Lawrence, G. J., Finnegan, E. J., Ayliffe M. A., and Ellis, J. G. (1995) The L6 gene for flax rust resistance is related to the Arabidopsis bacterial resistance gene RPS2 and the tobacco viral resistance gene N. Plant Cell 7, 1195-1206.