메뉴 건너뛰기




Volumn 27, Issue 14, 2011, Pages 1957-1963

The strength of chemical linkage as a criterion for pruning metabolic graphs

Author keywords

[No Author keywords available]

Indexed keywords

ESCHERICHIA COLI;

EID: 79960138128     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btr271     Document Type: Article
Times cited : (4)

References (25)
  • 1
    • 23344438932 scopus 로고    scopus 로고
    • Scale-freeness and biological networks
    • Arita,M. (2005) Scale-freeness and biological networks. J. Biochem., 138, 1-4.
    • (2005) J. Biochem. , vol.138 , pp. 1-4
    • Arita, M.1
  • 2
    • 47549099578 scopus 로고    scopus 로고
    • Using atom mapping rules for an improved detection of relevant routes in weighted metabolic networks
    • Blum,T. and Kohlbacher,O. (2008) Using atom mapping rules for an improved detection of relevant routes in weighted metabolic networks. J. Comput. iol., 15, 565-576.
    • (2008) J. Comput. Biol. , vol.15 , pp. 565-576
    • Blum, T.1    Kohlbacher, O.2
  • 3
    • 77957237619 scopus 로고    scopus 로고
    • An open-source java platform for automated reaction mapping
    • Crabtree,J.D. et al. (2010) An open-source java platform for automated reaction mapping. J. Chem. Inform. Model., 50, 1751-1756.
    • (2010) J. Chem. Inform. Model. , vol.50 , pp. 1751-1756
    • Crabtree, J.D.1
  • 4
    • 30344456708 scopus 로고    scopus 로고
    • Inferring meaningful pathways in weighted metabolic networks
    • Croes,D. et al. (2006) Inferring meaningful pathways in weighted metabolic networks. J. Mol. Biol., 356, 222-236.
    • (2006) J. Mol. Biol. , vol.356 , pp. 222-236
    • Croes, D.1
  • 5
    • 0347506655 scopus 로고    scopus 로고
    • An overview of data models for the analysis of biochemical pathways
    • Deville,Y. et al. (2003) An overview of data models for the analysis of biochemical pathways. Brief. Bioinform., 4, 246-259.
    • (2003) Brief. Bioinform. , vol.4 , pp. 246-259
    • Deville, Y.1
  • 6
    • 34447502516 scopus 로고    scopus 로고
    • A network perspective on the evolution of metabolism by gene duplication
    • Diaz-Mejia,J. et al. (2007) A network perspective on the evolution of metabolism by gene duplication. Genome Biol., 8, R26.
    • (2007) Genome Biol. , vol.8
    • Diaz-Mejia, J.1
  • 7
    • 18244404606 scopus 로고    scopus 로고
    • Structural analysis of expanding metabolic networks
    • Ebenhh,O. et al. (2004) Structural analysis of expanding metabolic networks. Genome Inform., 15, 35-45.
    • (2004) Genome Inform. , vol.15 , pp. 35-45
    • Ebenhh, O.1
  • 8
    • 64449087758 scopus 로고    scopus 로고
    • Metabolic pathfinding using rpair annotation
    • Faust,K. et al. (2009) Metabolic pathfinding using rpair annotation. J. Mol. Biol., 388, 390-414.
    • (2009) J. Mol. Biol. , vol.388 , pp. 390-414
    • Faust, K.1
  • 9
    • 53749085229 scopus 로고    scopus 로고
    • A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology
    • Herrgard,M.J. et al. (2008) A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology. Nat. iotechnol., 26, 1155-1160.
    • (2008) Nat. Biotechnol. , vol.26 , pp. 1155-1160
    • Herrgard, M.J.1
  • 10
    • 70349759581 scopus 로고    scopus 로고
    • Model validation of simple-graph representations of metabolism
    • Holme,P. (2009) Model validation of simple-graph representations of metabolism. J. R. Soc. Inter., 6, 1027-1034.
    • (2009) J. R. Soc. Inter. , vol.6 , pp. 1027-1034
    • Holme, P.1
  • 11
    • 0034609791 scopus 로고    scopus 로고
    • The large-scale organization of metabolic networks
    • Jeong,H. et al. (2000) The large-scale organization of metabolic networks. Nature, 407, 651-654.
    • (2000) Nature , vol.407 , pp. 651-654
    • Jeong, H.1
  • 12
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto Encyclopaedia of Genes and Genomes
    • Kanehisa,M. and Goto,S. (2000) KEGG: Kyoto Encyclopaedia of Genes and Genomes. Nucleic Acids Res., 28, 27-30.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 13
    • 45249101693 scopus 로고    scopus 로고
    • RPAIR: a reactant-pair database representing chemical changes in enzymatic reactions
    • Kotera,M. et al. (2004) RPAIR: a reactant-pair database representing chemical changes in enzymatic reactions. Genome Inform., 15, P062.
    • (2004) Genome Inform. , vol.15
    • Kotera, M.1
  • 14
    • 33645958298 scopus 로고    scopus 로고
    • Biowarehouse: a bioinformatics database warehouse toolkit
    • Lee,T. et al. (2006) Biowarehouse: a bioinformatics database warehouse toolkit. BMC Bioinformatics, 7, 170.
    • (2006) BMC Bioinformatics , vol.7 , pp. 170
    • Lee, T.1
  • 15
    • 0345863903 scopus 로고    scopus 로고
    • The aMAZE LightBench: a web interface to a relational database of cellular processes
    • Lemer,C. et al. (2004) The aMAZE LightBench: a web interface to a relational database of cellular processes. Nucleic Acids Res., 32 (Suppl. 1), 443-D448.
    • (2004) Nucleic Acids Res. , vol.32 , Issue.SUPPL. 1
    • Lemer, C.1
  • 16
    • 0037316239 scopus 로고    scopus 로고
    • Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms
    • Ma,H.W. and Zeng,A.P. (2003) Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms. ioinformatics, 19, 270-277.
    • (2003) Bioinformatics , vol.19 , pp. 270-277
    • Ma, H.W.1    Zeng, A.P.2
  • 17
    • 33747199651 scopus 로고    scopus 로고
    • Challenges to be faced in the reconstruction of metabolic networks from public databases
    • Poolman,M.G. et al. (2006) Challenges to be faced in the reconstruction of metabolic networks from public databases. IEEE Proc. Sys. Biol., 153, 79-384.
    • (2006) IEEE Proc. Sys. Biol. , vol.153 , pp. 379-384
    • Poolman, M.G.1
  • 18
    • 16344376028 scopus 로고    scopus 로고
    • Metabolic pathway analysis web service (Pathway Hunter Tool at CUBIC)
    • Rahman,S.A. et al. (2005) Metabolic pathway analysis web service (Pathway Hunter Tool at CUBIC). Bioinformatics, 21, 1189-1193.
    • (2005) Bioinformatics , vol.21 , pp. 1189-1193
    • Rahman, S.A.1
  • 19
    • 0037199968 scopus 로고    scopus 로고
    • Hierarchical organization of modularity in metabolic networks
    • Ravasz,E. et al. (2002) Hierarchical organization of modularity in metabolic networks. Science, 297, 1551-1555.
    • (2002) Science , vol.297 , pp. 1551-1555
    • Ravasz, E.1
  • 20
    • 18144413962 scopus 로고    scopus 로고
    • Scale-rich metabolic networks
    • Tanaka,R. (2005) Scale-rich metabolic networks. Phys. Rev. Lett., 94, 168101.
    • (2005) Phys. Rev. Lett. , vol.94 , pp. 168101
    • Tanaka, R.1
  • 21
    • 0036047979 scopus 로고    scopus 로고
    • Graph-based analysis of metabolic networks
    • van Helden,J. et al. (2002) Graph-based analysis of metabolic networks. Ernst Schering Res Found Workshop, 38, 245-274.
    • (2002) Ernst Schering Res Found Workshop , vol.38 , pp. 245-274
    • van Helden, J.1
  • 23
    • 33748673577 scopus 로고    scopus 로고
    • Hierarchical modularity of nested bow-ties in metabolic networks
    • Zhao,J. et al. (2006) Hierarchical modularity of nested bow-ties in metabolic networks. BMC Bioinformatics, 7, 386.
    • (2006) BMC Bioinformatics , vol.7 , pp. 386
    • Zhao, J.1
  • 24
    • 35548939345 scopus 로고    scopus 로고
    • Modular co-evolution of metabolic networks
    • Zhao,J. et al. (2007) Modular co-evolution of metabolic networks. BMC Bioinformatics, 8, 311.
    • (2007) BMC Bioinformatics , vol.8 , pp. 311
    • Zhao, J.1
  • 25
    • 13244265564 scopus 로고    scopus 로고
    • Structural comparison of metabolic networks in selected single cell organisms
    • Zhu,D. and Qin,Z.S. (2005) Structural comparison of metabolic networks in selected single cell organisms. BMC Bioinformatics, 6, 1471-2105.
    • (2005) BMC Bioinformatics , vol.6 , pp. 1471-2105
    • Zhu, D.1    Qin, Z.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.