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Volumn 6, Issue 40, 2009, Pages 1027-1034

Model validation of simple-graph representations of metabolism

Author keywords

Chemical networks; Chemical reaction systems; Complex networks; Statistical graph methods

Indexed keywords

BIOCHEMISTRY; GRAFTING (CHEMICAL); METABOLISM; NEWTONIAN FLOW; REDUCTION; SUBSTRATES; SYNTHESIS (CHEMICAL);

EID: 70349759581     PISSN: 17425689     EISSN: 17425662     Source Type: Journal    
DOI: 10.1098/rsif.2008.0489     Document Type: Article
Times cited : (24)

References (20)
  • 1
    • 39149113411 scopus 로고    scopus 로고
    • Modular cell biology: Retroactivity and insulation
    • doi:10.1038/msb4100204
    • Del Vecchio, D., Ninfa, A. & Sontag, E. 2008 Modular cell biology: retroactivity and insulation. Mol. Syst. Biol. 4, 4 100 204. (doi:10.1038/msb4100204)
    • (2008) Mol. Syst. Biol. , vol.4 , pp. 4100204
    • Del Vecchio, D.1    Ninfa, A.2    Sontag, E.3
  • 2
    • 32844469384 scopus 로고    scopus 로고
    • Evolutionary origin of power-laws in a biochemical reaction network: Embedding the distribution of abundance into topology
    • doi:10.1103/PhysRevE.73.011912
    • Furusawa, C.& Kaneko, K. 2006 Evolutionary origin of power-laws in a biochemical reaction network: embedding the distribution of abundance into topology. Phys. Rev. E 73, 011 912. (doi:10.1103/PhysRevE.73.011912)
    • (2006) Phys. Rev. E , vol.73 , pp. 011912
    • Furusawa, C.1    Kaneko, K.2
  • 3
    • 34249936874 scopus 로고    scopus 로고
    • Scaling theory of transport in complex biological networks
    • doi:10.1073/pnas. 0700250104
    • Gallos, L. K., Song, C., Havlin, S. & Makse, H. A. 2007 Scaling theory of transport in complex biological networks. Proc. Natl Acad. Sci. USA 104, 7746-7751. (doi:10.1073/pnas. 0700250104)
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 7746-7751
    • Gallos, L.K.1    Song, C.2    Havlin, S.3    Makse, H.A.4
  • 4
    • 0037062448 scopus 로고    scopus 로고
    • Community structure in social and biological networks
    • doi:10.1073/pnas.122653799
    • Girvan, M. & Newman, M. E. J. 2002 Community structure in social and biological networks. Proc. Natl Acad. Sci. USA 99, 7821-7826. (doi:10.1073/pnas.122653799)
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 7821-7826
    • Girvan, M.1    Newman, M.E.J.2
  • 5
    • 42449123222 scopus 로고    scopus 로고
    • Reconstruction and analysis of the genetic and metabolic regulatory networks of the central metabolism of Bacillus subtilis
    • doi:10.1186/ 1752-0509-2-20
    • Goelzer, A., Brikci, F. B., Martin-Verstraete, I., Noirot, P., Bessières, P., Aymerich, S. & Fromion, V. 2008 Reconstruction and analysis of the genetic and metabolic regulatory networks of the central metabolism of Bacillus subtilis. BMC Syst. Biol. 2, 20. (doi:10.1186/ 1752-0509-2-20)
    • (2008) BMC Syst. Biol. , vol.2 , pp. 20
    • Goelzer, A.1    Brikci, F.B.2    Martin-Verstraete, I.3    Noirot, P.4    Bessières, P.5    Aymerich, S.6    Fromion, V.7
  • 6
    • 42749102413 scopus 로고    scopus 로고
    • Networking the seceder model: Group formation in social and economic systems
    • doi:10.1103/PhysRevE.70.036108
    • Grönlund, A. & Holme, P. 2004 Networking the seceder model: group formation in social and economic systems. Phys. Rev. E 70, 036 108. (doi:10.1103/PhysRevE.70.036108)
    • (2004) Phys. Rev. E , vol.70 , pp. 036108
    • Grönlund, A.1    Holme, P.2
  • 7
    • 3042848952 scopus 로고    scopus 로고
    • Evidence for dynamically organized modularity in the yeast protein-protein interaction network
    • doi:10.1038/nature02555
    • Han, J.-D. J. et al. 2004 Evidence for dynamically organized modularity in the yeast protein-protein interaction network. Nature 430, 88-93. (doi:10.1038/nature02555)
    • (2004) Nature , vol.430 , pp. 88-93
    • Han, J.-D.J.1
  • 9
    • 34548425218 scopus 로고    scopus 로고
    • Currency and commodity metabolites: Their identification and relation to the modularity of metabolic networks
    • doi:10.1049/iet-syb:20060077
    • Huss, M. & Holme, P. 2007 Currency and commodity metabolites: their identification and relation to the modularity of metabolic networks. IET Syst. Biol. 1, 280-285. (doi:10.1049/iet-syb:20060077)
    • (2007) IET Syst. Biol. , vol.1 , pp. 280-285
    • Huss, M.1    Holme, P.2
  • 10
    • 0036699526 scopus 로고    scopus 로고
    • Revealing modular organization in the yeast transcriptional network
    • doi:10.1038/ng941
    • Ihmels, J., Friedlander, G., Bergmann, S., Sarig, O., Ziv, Y. & Barkai, N. 2002 Revealing modular organization in the yeast transcriptional network. Nat. Genet. 31, 370-377. (doi:10.1038/ng941)
    • (2002) Nat. Genet. , vol.31 , pp. 370-377
    • Ihmels, J.1    Friedlander, G.2    Bergmann, S.3    Sarig, O.4    Ziv, Y.5    Barkai, N.6
  • 11
    • 7644238181 scopus 로고    scopus 로고
    • Biological robustness
    • doi:10.1038/nrg1471
    • Kitano, H. 2004 Biological robustness. Nat. Rev. Genet. 5, 826-837. (doi:10.1038/nrg1471)
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 826-837
    • Kitano, H.1
  • 12
    • 34047224656 scopus 로고    scopus 로고
    • Limited resolution in complex network community detection with potts model approach
    • doi:10.1140/epjb/e2007-00088-4
    • Kumpula, J., Saramäki, J., Kaski, K. & Kertész, J. 2007 Limited resolution in complex network community detection with potts model approach. Eur. Phys. J. B 56, 41. (doi:10.1140/epjb/e2007-00088-4)
    • (2007) Eur. Phys. J. B , vol.56 , pp. 41
    • Kumpula, J.1    Saramäki, J.2    Kaski, K.3    Kertész, J.4
  • 13
    • 0037012880 scopus 로고    scopus 로고
    • Specificity and stability in topology of protein networks
    • DOI 10.1126/science.1065103
    • Maslov, S. & Sneppen, K. 2002 Specificity and stability in topology of protein networks. Science 296, 910-913. (doi:10. 1126/science.1065103) (Pubitemid 34464896)
    • (2002) Science , vol.296 , Issue.5569 , pp. 910-913
    • Maslov, S.1    Sneppen, K.2
  • 14
    • 33745012299 scopus 로고    scopus 로고
    • Modularity and community structure in networks
    • doi:10.1073/pnas.0601602103
    • Newman, M. E. J. 2006 Modularity and community structure in networks. Proc. Natl Acad. Sci. USA 103, 8577-8582. (doi:10.1073/pnas.0601602103)
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 8577-8582
    • Newman, M.E.J.1
  • 15
    • 0000812783 scopus 로고
    • Partitioning sparse matrices with eigenvectors of graphs
    • doi:10.1137/0611030
    • Pothen, A., Simon, H. & Liou, K. 1990 Partitioning sparse matrices with eigenvectors of graphs. SIAM J. Matrix Anal. 11, 430. (doi:10.1137/0611030)
    • (1990) SIAM J. Matrix Anal. , vol.11 , pp. 430
    • Pothen, A.1    Simon, H.2    Liou, K.3
  • 16
    • 34250655368 scopus 로고    scopus 로고
    • An information-theoretic framework for resolving community structure in complex networks
    • doi:10.1073/pnas.0611034104
    • Rosvall, M. & Bergstrom, C. T. 2007 An information-theoretic framework for resolving community structure in complex networks. Proc. Natl Acad. Sci. USA 104, 7327-7331. (doi:10.1073/pnas.0611034104)
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 7327-7331
    • Rosvall, M.1    Bergstrom, C.T.2
  • 17
    • 7444246261 scopus 로고    scopus 로고
    • The large-scale organization of chemical reaction networks in astrophysics
    • doi:10.1209/epl/i2004-10241-3
    • Solé, R. V. & Munteanu, A. 2004 The large-scale organization of chemical reaction networks in astrophysics. Europhys. Lett. 68, 170-176. (doi:10.1209/epl/i2004-10241-3)
    • (2004) Europhys. Lett. , vol.68 , pp. 170-176
    • Solé, R.V.1    Munteanu, A.2
  • 18
    • 33748673577 scopus 로고    scopus 로고
    • Hierarchical modularity of nested bow-ties in metabolic networks
    • DOI 10.1186/1471-2105-7-386
    • Zhao, J., Yu, H., Luo, J.-H., Cao, Z.-W. & Li, Y.-X. 2006 Hierarchical modularity of nested bow-ties in metabolic networks. BMC Bioinform. 7, 386. (doi:10.1186/1471-2105-7-386) (Pubitemid 44382755)
    • (2006) BMC Bioinformatics , vol.7 , pp. 386
    • Zhao, J.1    Yu, H.2    Luo, J.-H.3    Cao, Z.-W.4    Li, Y.-X.5
  • 20
    • 45849155039 scopus 로고    scopus 로고
    • Information-theoretic approach to network modularity
    • doi:10.1103/PhysRevE.71.046117
    • Ziv, E., Middendorf, M. & Wiggins, C. H. 2005 Information-theoretic approach to network modularity. Phys. Rev. E 71, 046 117. (doi:10.1103/PhysRevE. 71.046117)
    • (2005) Phys. Rev. E , vol.71 , pp. 046117
    • Ziv, E.1    Middendorf, M.2    Wiggins, C.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.