Comparative whole genome sequence analysis of the carcinogenic bacterial model pathogen Helicobacter felis

Genome Biology and Evolution

Volumn 3, Issue 1, 2011, Pages 302-308

  Arnold, Isabelle C ^a   Zigova, Zuzana ^a   Holden, Matthew ^b   Lawley, Trevor D ^b   Rad, Roland ^b   Dougan, Gordon ^b   Falkow, Stanley ^c   Bentley, Stephen D ^b   Müller, Anne ^a  

^a UNIVERSITY OF ZURICH   (Switzerland)

^b WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^c STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Bacteriophage; Comparative genomics; Genome sequence analysis; Helicobacter felis; Horizontal gene transfer; Mobile elements

Indexed keywords

BACTERIAL ANTIGEN; BACTERIAL DNA; BACTERIAL PROTEIN; CAGA PROTEIN, HELICOBACTER PYLORI; COLLAGENASE; GAMMA GLUTAMYLTRANSFERASE; VACA PROTEIN, HELICOBACTER PYLORI;

ANIMAL; ARTICLE; BACTERIAL GENOME; CAT; CELL TRANSFORMATION; COMPARATIVE STUDY; DNA SEQUENCE; DOG; GENETICS; HELICOBACTER FELIS; HELICOBACTER PYLORI; HUMAN; MICROBIOLOGY; MOLECULAR GENETICS; MOUSE; NUCLEOTIDE SEQUENCE; STOMACH MUCOSA; STOMACH TUMOR;

ANIMALS; ANTIGENS, BACTERIAL; BACTERIAL PROTEINS; BASE SEQUENCE; CATS; CELL TRANSFORMATION, NEOPLASTIC; COLLAGENASES; DNA, BACTERIAL; DOGS; GAMMA-GLUTAMYLTRANSFERASE; GASTRIC MUCOSA; GENOME, BACTERIAL; HELICOBACTER FELIS; HELICOBACTER PYLORI; HUMANS; MICE; MOLECULAR SEQUENCE DATA; SEQUENCE ANALYSIS, DNA; STOMACH NEOPLASMS;

BACTERIA (MICROORGANISMS); CAMPYLOBACTER; CANIS FAMILIARIS; HELICOBACTER; HELICOBACTER FELIS; HELICOBACTER PYLORI; MUS; NEGIBACTERIA;

EID: 79960098094     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evr022     Document Type: Article

References (42)

1. Alm RA, et al. 1999. Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori. Nature 397:176-180.
2. Baar C, et al. 2003. Complete genome sequence and analysis of Wolinella succinogenes. Proc Natl Acad Sci U S A. 100:11690-11695. (Pubitemid 37205996)
3. Baltrus DA, et al. 2009. The complete genome sequence of Helicobacter pylori strain G27. J Bacteriol. 191:447-448.
4. Bateman A, et al. 2004. The Pfam protein families database. Nucleic Acids Res. 32:D138-D141. (Pubitemid 38081623)
5. Craig VJ, et al. 2010a. B-cell receptor signaling and CD40 ligandindependent T cell help cooperate in Helicobacter-induced MALT lymphomagenesis. Leukemia 24:1186-1196.
6. Craig VJ, et al. 2010b. Gastric MALT lymphoma B cells express polyreactive, somatically mutated immunoglobulins. Blood. 115(3):581-591.
7. De Ungria MC, et al. 1998. A novel method of extracting plasmid DNA from Helicobacter species. Helicobacter 3:269-277. (Pubitemid 128656779)
8. Enno A, et al. 1998. Antigen-dependent progression of mucosaassociated lymphoid tissue (MALT)-type lymphoma in the stomach. Effects of antimicrobial therapy on gastric MALT lymphoma in mice. Am J Pathol. 152:1625-1632. (Pubitemid 28275020)
9. Enno A, et al. 1995. MALToma-like lesions in the murine gastric mucosa after long-term infection with Helicobacter felis. A mouse model of Helicobacter pylori-induced gastric lymphoma. Am J Pathol. 147:217-222.
10. Eppinger M, et al. 2006. Who ate whom? Adaptive Helicobactergenomic changes that accompanied a host jump from early humans to large felines. PLoS Genet. 2:e120.
11. Farnbacher M, et al. 2010. Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8. BMC Genomics. 11:335.
12. Fischer W, et al. 2010. Strain-specific genes of Helicobacter pylori: genome evolution driven by a novel type IV secretion system and genomic island transfer. Nucleic Acids Res. 38(18):6089-101.
13. Fox JG, et al. 2000. Concurrent enteric helminth infection modulates inflammation and gastric immune responses and reduces helicobacter-induced gastric atrophy. Nat Med. 6:536-542. (Pubitemid 30305903)
14. Fox JG, et al. 2002. Germ-line p53-targeted disruption inhibits helicobacter-induced premalignant lesions and invasive gastric carcinoma through down-regulation of Th1 proinflammatory responses. Cancer Res. 62:696-702. (Pubitemid 34126943)
15. Giannakis M, et al. 2008. Helicobacter pylori evolution during progression from chronic atrophic gastritis to gastric cancer and its impact on gastric stem cells. Proc Natl Acad Sci U S A. 105:4358-4363. (Pubitemid 351754385)
16. Gong M, et al. 2010. Helicobacter pylori gamma-glutamyl transpeptidase is a pathogenic factor in the development of peptic ulcer disease. Gastroenterology 139:564-573.
17. Hofreuter D, Karnholz A, Haas R. 2003. Topology and membrane interaction of Helicobacter pylori ComB proteins involved in natural transformation competence. Int J Med Microbiol. 293:153-165. (Pubitemid 36807108)
18. Hofreuter D, Odenbreit S, Henke G, Haas R. 1998. Natural competence for DNA transformation in Helicobacter pylori: identification and genetic characterization of the comB locus. Mol Microbiol. 28:1027-1038. (Pubitemid 28258999)
19. Houghton J, et al. 2004. Gastric cancer originating from bone marrowderived cells. Science 306:1568-1571. (Pubitemid 39564955)
20. Hoy B, et al. Helicobacter pylori HtrA is a new secreted virulence factor that cleaves E-cadherin to disrupt intercellular adhesion. EMBO Rep. 11:798-804.
21. Karita M, Tsuda M, Nakazawa T. 1995. Essential role of urease in vitro and in vivo Helicobacter pylori colonization study using a wild-type and isogenic urease mutant strain. J Clin Gastroenterol. 21(Suppl 1):S160-S163. (Pubitemid 26001738)
22. Karnholz A, et al. 2006. Functional and topological characterization of novel components of the comB DNA transformation competence system in Helicobacter pylori. J Bacteriol. 188:882-893. (Pubitemid 43146403)
23. Lee A, et al. 1993. Long-term infection of the gastric mucosa with Helicobacter species does induce atrophic gastritis in an animal model of Helicobacter pylori infection. Zentralbl Bakteriol. 280:38-50.
24. Lee A, Fox JG, Otto G, Murphy J. 1990. A small animal model of human Helicobacter pylori active chronic gastritis. Gastroenterology 99:1315-1323. (Pubitemid 20381865)
25. Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25:955-964. (Pubitemid 27298263)
26. Markowitz VM, et al. 2009. The integrated microbial genomes system: an expanding comparative analysis resource. Nucleic Acids Res. 38:D382-D390.
27. Marshall BJ, Warren JR. 1984. Unidentified curved bacilli in the stomach of patients with gastritis and peptic ulceration. Lancet 1:1311-1315.
28. Montecucco C, De Bernard M, Papini E, Zoratti M. 2001. Helicobacter pylori vacuolating cytotoxin: cell intoxication and anion-specific channel activity. Curr Top Microbiol Immunol. 257:113-129.
29. Oh JD, et al. 2006. The complete genome sequence of a chronic atrophic gastritis Helicobacter pylori strain: evolution during disease progression. Proc Natl Acad Sci U S A. 103:9999-10004. (Pubitemid 43993612)
30. O'Toole PW, Lane MC, Porwollik S. 2000. Helicobacter pylori motility. Microbes Infect. 2:1207-1214.
31. O'Toole PW, et al. 2010. Comparative genomics and proteomics of Helicobacter mustelae, an ulcerogenic and carcinogenic gastric pathogen. BMC Genomics. 11:164.
32. Parkhill J, et al. 2000. The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences. Nature 403:665-668. (Pubitemid 30104008)
33. Parsonnet J, et al. 1991. Helicobacter pylori infection and the risk of gastric carcinoma. N Engl J Med. 325:1127-1131.
34. Parsonnet J, et al. 1994. Helicobacter pylori infection and gastric lymphoma. N Engl J Med. 330:1267-1271. (Pubitemid 24129959)
35. Rutherford K, et al. 2000. Artemis: sequence visualization and annotation. Bioinformatics 16:944-945.
36. Satin B, et al. 2000. The neutrophil-activating protein (HP-NAP) of Helicobacter pylori is a protective antigen and a major virulence factor. J Exp Med. 191:1467-1476. (Pubitemid 30257344)
37. Sayi A, et al. 2009. The CD4 T cell-mediated IFN-gamma response to Helicobacter infection is essential for clearance and determines gastric cancer risk. J Immunol. 182:7085-7101.
38. Stoof J, et al. 2008. Inverse nickel-responsive regulation of two urease enzymes in the gastric pathogen Helicobacter mustelae. Environ Microbiol. 10:2586-2597.
39. Suerbaum S, et al. 2003. The complete genome sequence of the carcinogenic bacterium Helicobacter hepaticus. Proc Natl Acad Sci U S A. 100:7901-7906. (Pubitemid 36760067)
40. Toller IM, Altmeyer M, Kohler E, Hottiger MO, Müller A. 2010. Inhibition of ADP ribosylation prevents and cures helicobacter-induced gastric preneoplasia. Cancer Res. 70:5912-5922.
41. Toller IM, Hitzler I, Sayi A, Mueller A. 2010. Prostaglandin E2 prevents Helicobacter-induced gastric preneoplasia and facilitates persistent infection in a mouse model. Gastroenterology 138:1455-1467.
42. Tomb JF, et al. 1997. The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature 388:539-547.