Escherichia coli topoisomerase i is an iron and zinc binding protein

BioMetals

Volumn 24, Issue 4, 2011, Pages 729-736

  Lu, Jianxin ^a   Wang, Wu ^a,b   Tan, Guoqiang ^a   Landry, Aaron P ^b   Yi, Peng ^a   Si, Fan ^a   Ren, Yaguang ^a   Ding, Huangen ^a,b  

^a WENZHOU MEDICAL UNIVERSITY   (China)

^b LOUISIANA STATE UNIVERSITY   (United States)

Author keywords

Iron; Metalloprotein; Topoisomerase I; Zinc

Indexed keywords

BACTERIAL DNA; DNA TOPOISOMERASE; IRON; ZINC;

ARTICLE; BACTERIAL CELL; BINDING COMPETITION; CELL GROWTH; CHEMICAL ANALYSIS; CHEMICAL BINDING; CONTROLLED STUDY; CULTURE MEDIUM; DNA SUPERCOILING; ENZYME ACTIVITY; ENZYME BINDING; ENZYME PURIFICATION; ESCHERICHIA COLI; IRON BINDING; METAL BINDING; NONHUMAN;

BINDING SITES; DNA TOPOISOMERASES, TYPE I; ESCHERICHIA COLI; IRON; SPECTROPHOTOMETRY, ULTRAVIOLET; ZINC;

ESCHERICHIA COLI;

EID: 79960091043     PISSN: 09660844     EISSN: 15728773     Source Type: Journal    
DOI: 10.1007/s10534-011-9425-6     Document Type: Article

References (30)

1. A Ahumada YC Tse-Dinh 2002 The role of the Zn(II) binding domain in the mechanism of E. coli DNA topoisomerase I BMC Biochem 3 13 12052259 10.1186/1471-2091-3-13
2. JB Bae JH Park MY Hahn MS Kim JH Roe 2004 Redox-dependent changes in RsrA, an anti-sigma factor in Streptomyces coelicolor: zinc release and disulfide bond formation J Mol Biol 335 425 435 14672653 10.1016/j.jmb.2003.10. 065 1:CAS:528:DC%2BD3sXps1eqsrw%3D (Pubitemid 37532646)
3. NM Baker R Rajan A Mondragon 2009 Structural studies of type I topoisomerases Nucleic Acids Res 37 693 701 19106140 10.1093/nar/gkn1009 1:CAS:528:DC%2BD1MXisFektL8%3D
4. JM Berg Y Shi 1996 The galvanization of biology: a growing appreciation for the roles of zinc Science 271 1081 1085 8599083 10.1126/science.271.5252. 1081 1:CAS:528:DyaK28Xht1GksLk%3D (Pubitemid 26075222)
5. AN Besold SJ Lee SL Michel NL Sue HJ Cymet 2010 Functional characterization of iron-substituted neural zinc finger factor 1: metal and DNA binding J Biol Inorg Chem 15 583 590 20229093 10.1007/s00775-010-0626-1 1:CAS:528:DC%2BC3cXjtFOhsbc%3D
6. JJ Champoux 2001 DNA topoisomerases: structure, function, and mechanism Annu Rev Biochem 70 369 413 11395412 10.1146/annurev.biochem.70.1.369 1:CAS:528:DC%2BD3MXlsVeht7Y%3D (Pubitemid 32662215)
7. B Cheng CX Zhu C Ji A Ahumada YC Tse-Dinh 2003 Direct interaction between Escherichia coli RNA polymerase and the zinc ribbon domains of DNA topoisomerase I J Biol Chem 278 30705 30710 12788950 10.1074/jbc.M303403200 1:CAS:528:DC%2BD3sXmtFeqsL8%3D (Pubitemid 36994576)
8. D Conte S Narindrasorasak B Sarkar 1996 In vivo and in vitro iron-replaced zinc finger generates free radicals and causes DNA damage J Biol Chem 271 5125 5130 8617792 10.1074/jbc.271.9.5125 1:CAS:528:DyaK28XhtlOmsro%3D (Pubitemid 26075008)
9. RE Cowart FL Singleton JS Hind 1993 A comparison of bathophenanthrolinedisulfonic acid and ferrozine as chelators of iron(II) in reduction reactions Anal Biochem 211 151 155 8323027 10.1006/abio.1993.1246 1:CAS:528:DyaK3sXktVCgt7Y%3D (Pubitemid 23189343)
10. Z Dauter KS Wilson LC Sieker JM Moulis J Meyer 1996 Zinc- and iron-rubredoxins from Clostridium pasteurianum at atomic resolution: a high-precision model of a ZnS4 coordination unit in a protein Proc Natl Acad Sci USA 93 8836 8840 8799113 10.1073/pnas.93.17.8836 1:CAS:528:DyaK28Xlt1CitLg%3D (Pubitemid 26281977)
11. RC diTargiani SJ Lee S Wassink SL Michel 2006 Functional characterization of iron-substituted tristetraprolin-2D (TTP-2D, NUP475-2D): RNA binding affinity and selectivity Biochemistry 45 13641 13649 17087518 10.1021/bi060747n 1:CAS:528:DC%2BD28XhtFSgu7%2FE (Pubitemid 44748510)
12. X Duan J Yang B Ren G Tan H Ding 2009 Reactivity of nitric oxide with the [4Fe-4S] cluster of dihydroxyacid dehydratase from Escherichia coli Biochem J 417 783 789 18945212 10.1042/BJ20081423 1:CAS:528:DC%2BD1MXlvFOgtQ%3D%3D
13. P Forterre D Gadelle 2009 Phylogenomics of DNA topoisomerases: their origin and putative roles in the emergence of modern organisms Nucleic Acids Res 37 679 692 19208647 10.1093/nar/gkp032 1:CAS:528:DC%2BD1MXisFekurw%3D
14. AI Graham S Hunt SL Stokes N Bramall J Bunch AG Cox CW McLeod RK Poole 2009 Severe zinc depletion of Escherichia coli: roles for high affinity zinc binding by ZinT, Zinc transport and zinc-independent proteins J Biol Chem 284 18377 18389 19377097 10.1074/jbc.M109.001503 1:CAS:528:DC%2BD1MXnslegur4%3D
15. JS Hanas DJ Hazuda DF Bogenhagen FY Wu CW Wu 1983 Xenopus transcription factor A requires zinc for binding to the 5S RNA gene J Biol Chem 258 14120 14125 6196359 1:CAS:528:DyaL3sXmtVOgs74%3D
16. CD Lima JC Wang A Mondragon 1994 Three-dimensional structure of the 67 K N-terminal fragment of E. coli DNA topoisomerase I Nature 367 138 146 8114910 10.1038/367138a0 1:CAS:528:DyaK2cXhtVSnu70%3D (Pubitemid 24031694)
17. IF Liu T Annamalai JH Sutherland YC Tse-Dinh 2009 Hydroxyl radicals are involved in cell killing by bacterial topoisomerase I cleavage complex J Bacteriol 191 5315 5319 19525344 10.1128/JB.00559-09 1:CAS:528: DC%2BD1MXhtVSis73I
18. Mitscher LA (2005) Bacterial topoisomerase inhibitors: quinolone and pyridone antibacterial agents. Chem Rev 105:559-592 (Pubitemid 40351634)
19. Nitiss JL (2002) DNA topoisomerases in cancer chemotherapy: using enzymes to generate selective DNA damage. Curr Opin Investig Drugs 3:1512-1516
20. JG Omichinski C Trainor T Evans AM Gronenborn GM Clore G Felsenfeld 1993 A small single-"finger" peptide from the erythroid transcription factor GATA-1 binds specifically to DNA as a zinc or iron complex Proc Natl Acad Sci USA 90 1676 1680 8446581 10.1073/pnas.90.5.1676 1:CAS:528: DyaK3sXit1Ogt7o%3D (Pubitemid 23069919)
21. CE Outten TV O'Halloran 2001 Femtomolar sensitivity of metalloregulatory proteins controlling zinc homeostasis Science 292 2488 2492 11397910 10.1126/science.1060331 1:CAS:528:DC%2BD3MXkvFWlsrk%3D (Pubitemid 32605687)
22. Pommier Y (2006) Topoisomerase I inhibitors: camptothecins and beyond. Nat Rev Cancer 6:789-802 (Pubitemid 44450467)
23. H Qi R Menzel YC Tse-Dinh 1999 Increased thermosensitivity associated with topoisomerase I deletion and promoter mutations in Escherichia coli FEMS Microbiol Lett 178 141 146 10483733 10.1111/j.1574-6968.1999.tb13770.x 1:CAS:528:DyaK1MXltlCrtb4%3D (Pubitemid 29381501)
24. AJ Schoeffler JM Berger 2008 DNA topoisomerases: harnessing and constraining energy to govern chromosome topology Q Rev Biophys 41 41 101 18755053 10.1017/S003358350800468X 1:CAS:528:DC%2BD1cXhtVGnsbfE
25. VA Stupina JC Wang 2005 Viability of Escherichia coli topA mutants lacking DNA topoisomerase I J Biol Chem 280 355 360 15522872 1:CAS:528:DC%2BD2cXhtFGgu7vF (Pubitemid 40164999)
26. YC Tse-Dinh 1991 Zinc (II) coordination in Escherichia coli DNA topoisomerase I is required for cleavable complex formation with DNA J Biol Chem 266 14317 14320 1650356 1:CAS:528:DyaK3MXltV2htbk%3D
27. YC Tse-Dinh 2000 Increased sensitivity to oxidative challenges associated with topA deletion in Escherichia coli J Bacteriol 182 829 832 10633122 10.1128/JB.182.3.829-832.2000 1:CAS:528:DC%2BD3cXltFGisA%3D%3D (Pubitemid 30054019)
28. YC Tse-Dinh 2009 Bacterial topoisomerase I as a target for discovery of antibacterial compounds Nucleic Acids Res 37 731 737 19042977 10.1093/nar/gkn936 1:CAS:528:DC%2BD1MXisFekt7g%3D
29. YC Tse-Dinh RK Beran-Steed 1988 Escherichia coli DNA topoisomerase I is a zinc metalloprotein with three repetitive zinc-binding domains J Biol Chem 263 15857 15859 2846526 1:CAS:528:DyaL1cXls1KgtLg%3D (Pubitemid 18261993)
30. JC Wang 2002 Cellular roles of DNA topoisomerases: a molecular perspective Nat Rev Mol Cell Biol 3 430 440 12042765 10.1038/nrm831 1:CAS:528:DC%2BD38XltlartLw%3D (Pubitemid 34685700)