Zinc- and iron-rubredoxins from Clostridium pasteurianum at atomic resolution: A high-precision model of a ZnS4 coordination unit in a protein

Proceedings of the National Academy of Sciences of the United States of America

Volumn 93, Issue 17, 1996, Pages 8836-8840

  Dauter, Zbigniew ^a   Wilson, Keith S ^a   Sieker, Larry C ^b   Moulis, Jean Marc ^c   Meyer, Jacques ^c  

^a DESY   (Germany)

^b UNIVERSITY OF WASHINGTON   (United States)

^c Dept de Biol Molec et Structurale   (France)

Author keywords

iron sulfur; metal homeostasis; x ray crystallography; zinc fingers

Indexed keywords

CYSTEINE; IRON; POLYPEPTIDE; RUBREDOXIN; ZINC; ZINC FINGER PROTEIN;

ANISOTROPY; ARTICLE; CLOSTRIDIUM PASTEURIANUM; CRYSTAL STRUCTURE; HYDROGEN BOND; METAL BINDING; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN FOLDING; X RAY CRYSTALLOGRAPHY;

BACTERIAL PROTEINS; CLOSTRIDIUM; CRYSTALLOGRAPHY, X-RAY; CYSTEINE; IRON; MODELS, MOLECULAR; OXIDATION-REDUCTION; PROTEIN CONFORMATION; RECOMBINANT PROTEINS; REPRODUCIBILITY OF RESULTS; RUBREDOXINS; ZINC;

CLOSTRIDIUM PASTEURIANUM; ESCHERICHIA COLI;

EID: 0029787099     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.93.17.8836     Document Type: Article

References (44)

1. Vallee, B. L. & Auld, D. S. (1993) Acc. Chem. Res. 26, 543-551.
2. Luisi, B. F., Xu, W. X., Otwinowski, Z., Freedman, L. P., Yamamoto, K. R. & Sigler, P. B. (1991) Nature (London) 352, 497-505.
3. Omichinski, J. G., Clore, G. M., Schaad, O., Felsenfeld, G., Trainor, C., Appella, E., Stahl, S. J. & Gronenborn, A. M. (1993) Science 261, 438-446.
4. O'Halloran, T. V. (1993) Science 261, 715-725.
5. Perez-Alvarado, G. C., Miles, C., Michelsen, J. W., Louis, H. A., Winge, D. R., Beckerle, M. C. & Summers, M. F. (1994) Nat. Struct. Biol. 1, 388-398.
6. Landro, J. A., Schmidt, E., Schimmel, P., Tierney, D. L. & Penner-Hahn, J. E. (1994) Biochemistry 33, 14213-14220.
7. Tsukihara, T., Aoyama, H., Yamashita, E., Tomizaki, T., Yamaguchi, H., Shinzawa-Itoh, K., Nakashima, R., Yaono, R. & Yoshikawa, S. (1995) Science 269, 1069-1074.
8. Myers, L. C., Terranova, M. P., Ferentz, A. E., Wagner, G. & Verdine, G. L. (1993) Science 261, 1164-1167.
9. Eklund, H., Nordström, B., Zeppezauer, E., Söderlund, G., Ohlsson, I., Boiwe, T., Söderberg, B.-O., Tapia, O., Brändén, C-I. & Åkeson, Å (1976) J. Mol. Biol. 102, 27-59.
10. Monaco, H. L., Crawford, J. L. & Lipscomb, W. N. (1978) Proc. Natl. Acad. Sci. USA 75, 5276-5280.
11. Al-Karadaghi, S., Cedergren-Zeppezauer, E. S., Hövmoller, S., Petratos, K., Terry, H. & Wilson, K. S. (1994) Acta Cryslallogr. D 50, 793-807.
12. Watenpaugh, K. D., Sieker, L. C. & Jensen, L. H. (1980) J. Mol. Biol. 138, 615-633.
13. Frey, M., Sieker, L., Payan, F., Haser, R., Bruschi, M., Pepe, G. & LeGall, J. (1990) J. Mol. Biol. 197, 525-541.
14. Stenkamp, R. E., Sieker, L. C. & Jensen, L. H. (1990) Proteins Struct. Fund. Genet. 8, 352-364.
15. Adman, E. T., Sieker, L. C. & Jensen, L. H. (1991) J. Mol. Biol. 217, 337-352.
16. Dauter, Z., Sieker, L. C. & Wilson, K. S. (1992) Acta Crystallogr. B 48, 42-59.
17. Day, M. W., Hsu, B. T., Joshua-Tor, L., Park, J.-B., Zhou, Z. H., Adams, M. W. W. & Rees, D. C. (1992) Protein Sci. 1, 1494-1507.
18. Sieker, L. C., Stenkamp, R. E. & LeGall, J. (1994) Methods Enzymol. 243, 203-216.
19. Schwabe, J. W. R. & Klug, A. (1994) Nat. Struct. Biol. 1, 345-349.
20. May, S. W. & Kuo, J.-Y. (1978) Biochemistry 17, 3333-3338.
21. Kowal, A. T., Zambrano, I. C., Moura, I., Moura, J. J. G., LeGall, J. & Johnson, M. K. (1988) Inorg. Chem. 27, 1162-1166.
22. Blake, P. R., Park, J.-B., Zhou, Z. H., Hare, D. R., Adams, M. W. W. & Summers M. F. (1992) Protein Sci. 1, 1508-1521.
23. Mathieu, I., Meyer, J. & Moulis, J.-M. (1992) Biochem. J. 285, 255-262.
24. Eidsness, M. K., O'Dell, S. E., Kurtz, D. M., Jr., Robson, R. L. & Scott, R. A. (1992) Protein Eng. 5, 367-371.
25. Mathieu, I. & Meyer, J. (1993) FEMS Microbiol. Lett. 112, 223-228.
26. Moulis, J.-M., Davasse, V. & De Jésus, F. (1994) BioMetals 7, 272-278.
27. Pétillot, V., Forest, E., Mathieu, I., Meyer, J. & Moulis, J.-M. (1993) Biochem. J. 296, 657-661.
28. Herriott, J. R., Sieker, L. C., Jensen, L. H. & Lovenberg, W. (1970) J. Mol. Biol. 50, 391-406.
29. Otwinowski, Z. & Minor, W. (1993) DENZO: A Film Processing Program for Macromolecular Crystallography. (Yale Univ. Press, New Haven, CT).
30. Wilson, A. J. C. (1942) Nature (London) 150, 151-152.
31. Bernstein, F. C., Koetzle, T. F., Williams, G. J. B., Mayer, E. F., Brice, M. D., Rodgers, J. R., Kennard, O., Simanouchi, T. & Tasumi, M. (1977) J. Mol. Biol. 112, 535-542.
32. Engh, R. A. & Huber, R. (1991) Acta Crystallogr. A. 47, 392-400.
33. Konnert, J. H. & Hendrickson, W. A. (1980) Acta Crystallogr. A 36, 344-350.
34. Lamzin, V. S. & Wilson, K. S. (1993) Acta Crystallogr. D 49, 129-147.
35. Sheldrick, G. M. & Schneider, T. R (1996) Methods Enzymol., in press.
36. Jones, T. A. (1985) Methods Enzymol. 115, 157-171.
37. Brünger, A. (1993) Acta Crystallogr. D 49, 24-36.
38. Read, R. J. (1986) Acta Crystallogr. A 42, 140-149.
39. Lane, R. W., Ibers, J. A., Frankel, R. B., Papaefthymiou, G. C. & Holm, R. H. (1977) J. Am. Chem. Soc. 99, 84-98.
40. Swenson, D., Baenziger, N. C. & Coucouvannis, D. (1978) J. Am. Chem. Soc. 100, 1932-1934.
41. Gruff, E. S. & Koch, S.A. (1989) J. Am. Chem. Soc. 111, 8762-8763.
42. Noodleman, L., Norman, J. G., Jr., Osborne, J. H., Aizman, A. & Case, D. A. (1985) J. Am. Chem. Soc. 107, 3418-3426.
43. Zeng, J., Vallee, B. L. & Kägi, J. H. R. (1991) Proc. Natl. Acad. Sci. USA 88, 9984-9988.
44. Meyer, J., Gaillard, J. & Lutz, M. (1995) Biochem. Biophys. Res. Commun. 212, 827-833.