Gadolinium tagging for high-precision measurements of 6 nm distances in protein assemblies by EPR

Journal of the American Chemical Society

Volumn 133, Issue 27, 2011, Pages 10418-10421

  Yagi, Hiromasa ^a   Banerjee, Debamalya ^c   Graham, Bim ^b   Huber, Thomas ^a   Goldfarb, Daniella ^c   Otting, Gottfried ^a  

^a AUSTRALIAN NATIONAL UNIVERSITY   (Australia)

^b MONASH UNIVERSITY   (Australia)

^c WEIZMANN INSTITUTE OF SCIENCE   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

BIO-MOLECULAR; DIMER INTERFACE; DISTANCE DISTRIBUTIONS; DOUBLE ELECTRON-ELECTRON RESONANCE; HIGH-PRECISION MEASUREMENT; PARAMAGNETIC NMR; PROTEIN ASSEMBLY; PROTEIN COMPLEXES;

DIMERS; ELECTRON RESONANCE; ELECTRON SPIN RESONANCE SPECTROSCOPY; GADOLINIUM; METAL IONS; NUCLEAR MAGNETIC RESONANCE; PARAMAGNETISM; SINGLE CRYSTALS; THREE DIMENSIONAL;

PROTEINS;

1,4,7,10 TETRAAZACYCLODODECANE 1,4,7,10 TETRAACETIC ACID; CHAPERONE; CYSTEINE; ERP29 PROTEIN; GADOLINIUM; LYSINE; METAL ION; NITROGEN 15; PROTEIN; UNCLASSIFIED DRUG;

ACCURACY; ARTICLE; CHELATION; CHEMICAL STRUCTURE; CRYSTAL STRUCTURE; DOUBLE ELECTRON ELECTRON RESONANCE; ELECTRON SPIN RESONANCE; ENDOPLASMIC RETICULUM; HUMAN; ISOTOPE LABELING; MEASUREMENT; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PROTEIN ASSEMBLY; THREE DIMENSIONAL IMAGING; X RAY CRYSTALLOGRAPHY;

ANIMALS; CRYSTALLOGRAPHY, X-RAY; ELECTRON SPIN RESONANCE SPECTROSCOPY; GADOLINIUM; HEAT-SHOCK PROTEINS; HUMANS; MUTATION; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN STRUCTURE, SECONDARY; RATS;

EID: 79960059173     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja204415w     Document Type: Article

References (36)

1. Altenbach, C.; Kusnetzow, A. K.; Ernst, O. P.; Hofmann, K. P.; Hubbell, W. L. Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 7439
2. Borbat, P. P.; Mchaourab, H. S.; Freed, J. H. J. Am. Chem. Soc. 2002, 124, 5304
3. Dockter, C.; Volkov, A.; Bauer, C.; Polyhach, Y.; Joly-Lopez, Z.; Jeschke, G.; Paulsen, H. Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 18485
4. Yang, Y.; Ramelot, T. A.; McCarrick, R. M.; Ni, S.; Feldmann, E. A.; Cort, J. R.; Wang, H.; Ciccosanti, C.; Jiang, M.; Janjua, H.; Acton, T. B.; Xiao, R.; Everett, J. K.; Montelione, G. T.; Kennedy, M. A. J. Am. Chem. Soc. 2010, 132, 11910
5. Fanucci, G. E.; Cafiso, D. S. Curr. Opin. Struct. Biol. 2006, 16, 644
6. Schiemann, O.; Prisner, T. F. Q. Rev. Biophys. 2007, 40, 1
7. Borbat, P. P.; Freed, J. H. Methods Enzymol. 2007, 423, 117
8. Reginsson, G. W.; Schiemann, O. Biochem. J. 2011, 434, 353
9. Jeschke, G.; Polyhach, Y. Phys. Chem. Chem. Phys. 2007, 9, 1895
10. Potapov, A.; Song, Y.; Meade, T. J.; Goldfarb, D.; Astashkin, A. V.; Raitsimring, A. J. Magn. Reson. 2010, 205, 38
11. Potapov, A.; Yagi, H.; Huber, T.; Jergic, S.; Dixon, N. E.; Otting, G.; Goldfarb, D. J. Am. Chem. Soc. 2010, 132, 9040
12. Raitsimring, A. M.; Gunanathan, C.; Potapov, A.; Potapov, A.; Efremenko, I.; Martin, J. M. L.; Milstein, D.; Goldfarb, D. J. Am. Chem. Soc. 2007, 129, 14138
13. Gordon-Grossman, M.; Kaminker, I.; Goldfarb, D. Phys. Chem. Chem. Phys. 2011, 13, 10771
14. Polyhach, Y.; Godt, A.; Bauer, C.; Jeschke, G. J. Magn. Reson. 2007, 185, 118
15. Hubbell, W. L.; Gross, A.; Langen, R.; Lietzow, M. A. Curr. Opin. Struct. Biol. 1998, 8, 649
16. Song, Y.; Meade, T. J.; Astashkin, A. V.; Klein, E. L.; Enemark, J. H.; Raitsimring, A. J. Magn. Reson. 2011, 148, 379
17. Graham, B.; Loh, C. T.; Swarbrick, J. D.; Ung, P.; Shin, J.; Yagi, H.; Jia, X.; Chhabra, S.; Pintacuda, G.; Huber, T.; Otting, G. Bioconjugate Chem., submitted.
18. Rainey-Barger, E. K.; Mkrtchian, S.; Tsai, B. J. Virol. 2009, 83, 1483
19. Zhang, D.; Richardson, D. R. Int. J. Biochem. Cell Biol. 2011, 43, 33
20. Liepinsh, E.; Baryshev, M.; Sharipo, A.; Ingelman-Sundberg, M.; Otting, G.; Mkrtchian, S. Structure 2001, 9, 457
21. Barak, N. N.; Neumann, P.; Sevvana, M.; Schutkowski, M.; Naumann, K.; Malesevic, M.; Reichart, H.; Fischer, G.; Stubbs, M. T.; Ferrari, D. M. J. Mol. Biol. 2009, 385, 1630
22. Rainey-Barger, E. K.; Mkrtchian, S.; Tsai, B. Mol. Biol. Cell 2007, 18, 1253
23. Pannier, M.; Veit, S.; Godt, A.; Jeschke, G.; Spiess, H. W. J. Magn. Reson. 2000, 142, 331
24. Parker, D.; Puschmann, H.; Batsanov, A. S.; Senanayake, K. Inorg. Chem. 2003, 42, 8646
25. Jeschke, G.; Chechik, V.; Ionita, P.; Godt, A.; Zimmermann, H.; Banham, J.; Timmel, C. R.; Hilger, D.; Jung, H. Appl. Magn. Reson. 2006, 30, 473
26. Polyhach, Y.; Bordignon, E.; Jeschke, G. Phys. Chem. Chem. Phys. 2011, 13, 2356
27. Parker, D.; Dickins, R. S.; Puschmann, H.; Crossland, C.; Howard, J. A. K. Chem. Rev. 2002, 102, 1977
28. Ma, Q.; Guo, C.; Barnewitz, K.; Sheldrick, G. M.; Söling, H.-D.; Usoín, I.; Ferrari, D. M. J. Biol. Chem. 2003, 278, 44600
29. Su, X.-C.; Man, B.; Beeren, S.; Liang, H.; Simonsen, S.; Schmitz, C.; Huber, T.; Messerle, B. A.; Otting, G. J. Am. Chem. Soc. 2008, 130, 10486
30. Man, B.; Su, X.-C.; Liang, H.; Simonsen, S.; Huber, T.; Messerle, B. A.; Otting, G. Chem. - Eur. J. 2010, 16, 3827
31. Jia, X.; Maleckis, A.; Huber, T.; Otting, G. Chem. - Eur. J. 2011, 17, 6830
32. Ward, R.; Bowman, A.; Sozudogru, E.; El-Mkami, H.; Owen-Hughes, T.; Norman, D. G. J. Magn. Reson. 2010, 207, 164
33. Cruickshank, P. A.; Bolton, D. R.; Robertson, D. A.; Hunter, R. I.; Wylde, R. J.; Smith, G. M. Rev. Sci. Instrum. 2009, 80 103102
34. Vlasie, M. D.; Comuzzi, C.; van den Nieuwendijk, A. M.; Prudêncio, M.; Overhand, M.; Ubbink, M. Chem. - Eur. J. 2007, 13, 1715
35. Keizers, P. H.; Desreux, J. F.; Overhand, M.; Ubbink, M. J. Am. Chem. Soc. 2007, 129, 9292
36. Häussinger, D.; Huang, J. R.; Grzesiek, S. J. Am. Chem. Soc. 2009, 131, 14761