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Volumn 108, Issue 25, 2011, Pages 10156-10161

The Era GTPase recognizes the GAUCACCUCC sequence and binds helix 45 near the 3′ end of 16S rRNA

Author keywords

Cell growth regulation; Ribosome biogenesis

Indexed keywords

GUANOSINE TRIPHOSPHATASE; METHYLTRANSFERASE; RNA 16S;

EID: 79959990833     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1017679108     Document Type: Article
Times cited : (36)

References (36)
  • 1
    • 0019348832 scopus 로고
    • Translational initiation in prokaryotes
    • Gold L, et al. (1981) Translational initiation in prokaryotes. Annu Rev Microbiol 35:365-403.
    • (1981) Annu Rev Microbiol , vol.35 , pp. 365-403
    • Gold, L.1
  • 2
    • 0016154301 scopus 로고
    • The 3′-terminal sequence of Escherichia coli 16S ribosomal RNA: Complementarity to nonsense triplets and ribosome binding sites
    • Shine J, Dalgarno L (1974) The 3′-terminal sequence of Escherichia coli 16S ribosomal RNA: Complementarity to nonsense triplets and ribosome binding sites. Proc Natl Acad Sci USA 71:1342-1346.
    • (1974) Proc Natl Acad Sci USA , vol.71 , pp. 1342-1346
    • Shine, J.1    Dalgarno, L.2
  • 4
    • 0024150216 scopus 로고
    • Evolutionary conservation of structure and function of high molecular weight ribosomal RNA
    • Raué HA, Klootwijk J, Musters W (1988) Evolutionary conservation of structure and function of high molecular weight ribosomal RNA. Prog Biophys Mol Biol 51:77-129.
    • (1988) Prog Biophys Mol Biol , vol.51 , pp. 77-129
    • Raué, H.A.1    Klootwijk, J.2    Musters, W.3
  • 5
    • 0003173754 scopus 로고
    • eds RF Gesteland and JF Atkins (Cold Spring Harbor Laboratory Press, Plainview, NY)
    • Noller HF (1993) The RNA World, eds RF Gesteland and JF Atkins (Cold Spring Harbor Laboratory Press, Plainview, NY), pp 137-156.
    • (1993) The RNA World , pp. 137-156
    • Noller, H.F.1
  • 6
    • 0021771170 scopus 로고
    • Phylogeny of the conserved 3′ terminal structure of the RNA of small ribosomal subunits
    • Van Knippenberg PH, Van Kimmenade JM, Heus HA (1984) Phylogeny of the conserved 3′ terminal structure of the RNA of small ribosomal subunits. Nucleic Acids Res 12:2595-2604.
    • (1984) Nucleic Acids Res , vol.12 , pp. 2595-2604
    • Van Knippenberg, P.H.1    Van Kimmenade, J.M.2    Heus, H.A.3
  • 7
    • 0018868238 scopus 로고
    • Studies on the function of two adjacent N6,N6-dimethyladenosines near the 3′ end of 16S ribosomal RNA of Escherichia coli. IV. The effect of the methylgroups on ribosomal subunit interaction
    • Poldermans B, Bakker H, Van Knippenberg PH (1980) Studies on the function of two adjacent N6,N6-dimethyladenosines near the 3′ end of 16S ribosomal RNA of Escherichia coli. IV. The effect of the methylgroups on ribosomal subunit interaction. Nucleic Acids Res 8:143-151.
    • (1980) Nucleic Acids Res , vol.8 , pp. 143-151
    • Poldermans, B.1    Bakker, H.2    Van Knippenberg, P.H.3
  • 8
    • 0018686494 scopus 로고
    • Studies on the function of two adjacent N6,N6-dimethyladenosines near the 3′ end of 16 S ribosomal RNA of Escherichia coli. II. The effect of the absence of the methyl groups on initiation of protein biosynthesis
    • Poldermans B, Van Buul CP, Van Knippenberg PH (1979) Studies on the function of two adjacent N6,N6-dimethyladenosines near the 3′ end of 16 S ribosomal RNA of Escherichia coli. II. The effect of the absence of the methyl groups on initiation of protein biosynthesis. J Biol Chem 254:9090-9093.
    • (1979) J Biol Chem , vol.254 , pp. 9090-9093
    • Poldermans, B.1    Van Buul, C.P.2    Van Knippenberg, P.H.3
  • 9
    • 55349106559 scopus 로고    scopus 로고
    • Mechanistic insight into the ribosome biogenesis functions of the ancient protein KsgA
    • Connolly K, Rife JP, Culver G (2008) Mechanistic insight into the ribosome biogenesis functions of the ancient protein KsgA. Mol Microbiol 70:1062-1075.
    • (2008) Mol Microbiol , vol.70 , pp. 1062-1075
    • Connolly, K.1    Rife, J.P.2    Culver, G.3
  • 10
    • 0023056743 scopus 로고
    • Cross-linking of initiation factor IF3 to Escherichia coli 30S ribosomal subunit by trans-diamminedichloroplatinum(II): Characterization of two cross-linking sites in 16S rRNA; a possible way of functioning for IF3
    • Ehresmann C, et al. (1986) Cross-linking of initiation factor IF3 to Escherichia coli 30S ribosomal subunit by trans-diamminedichloroplatinum(II): Characterization of two cross-linking sites in 16S rRNA; a possible way of functioning for IF3. Nucleic Acids Res 14:4803-4821.
    • (1986) Nucleic Acids Res , vol.14 , pp. 4803-4821
    • Ehresmann, C.1
  • 11
    • 0026529433 scopus 로고
    • Identification of intermolecular RNA cross-links at the subunit interface of the Escherichia coli ribosome
    • Mitchell P, Osswald M, Brimacombe R (1992) Identification of intermolecular RNA cross-links at the subunit interface of the Escherichia coli ribosome. Biochemistry 31:3004-3011.
    • (1992) Biochemistry , vol.31 , pp. 3004-3011
    • Mitchell, P.1    Osswald, M.2    Brimacombe, R.3
  • 13
    • 0029383434 scopus 로고
    • From stand-by to decoding site. Adjustment of the mRNA on the 30S ribosomal subunit under the influence of the initiation factors
    • La Teana A, Gualerzi CO, Brimacombe R (1995) From stand-by to decoding site. Adjustment of the mRNA on the 30S ribosomal subunit under the influence of the initiation factors. RNA 1:772-782.
    • (1995) RNA , vol.1 , pp. 772-782
    • La Teana, A.1    Gualerzi, C.O.2    Brimacombe, R.3
  • 14
    • 0029966505 scopus 로고    scopus 로고
    • Mutations at two invariant nucleotides in the 3′-minor domain of Escherichia coli 16S rRNA affecting translational initiation and initiation factor 3 function
    • Firpo MA, Connelly MB, Goss DJ, Dahlberg AE (1996) Mutations at two invariant nucleotides in the 3′-minor domain of Escherichia coli 16S rRNA affecting translational initiation and initiation factor 3 function. J Biol Chem 271:4693-4698.
    • (1996) J Biol Chem , vol.271 , pp. 4693-4698
    • Firpo, M.A.1    Connelly, M.B.2    Goss, D.J.3    Dahlberg, A.E.4
  • 16
    • 70349557671 scopus 로고    scopus 로고
    • Role of GTPases in bacterial ribosome assembly
    • Britton RA (2009) Role of GTPases in bacterial ribosome assembly. Annu Rev Microbiol 63:155-176.
    • (2009) Annu Rev Microbiol , vol.63 , pp. 155-176
    • Britton, R.A.1
  • 17
    • 70349301461 scopus 로고    scopus 로고
    • Structure of ERA in complex with the 3′ end of 16S rRNA: Implications for ribosome biogenesis
    • Tu C, et al. (2009) Structure of ERA in complex with the 3′ end of 16S rRNA: Implications for ribosome biogenesis. Proc Natl Acad Sci USA 106:14843-14848.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 14843-14848
    • Tu, C.1
  • 19
    • 0034067634 scopus 로고    scopus 로고
    • Era GTPase of Escherichia coli: Binding to 16S rRNA and modulation of GTPase activity by RNA and carbohydrates
    • Meier TI, Peery RB, McAllister KA, Zhao G (2000) Era GTPase of Escherichia coli: Binding to 16S rRNA and modulation of GTPase activity by RNA and carbohydrates. Microbiology+ 146:1071-1083. (Pubitemid 30303504)
    • (2000) Microbiology , vol.146 , Issue.5 , pp. 1071-1083
    • Meier, T.I.1    Peery, R.B.2    McAllister, K.A.3    Zhao, G.4
  • 20
    • 77950866260 scopus 로고    scopus 로고
    • The effect of ribosome assembly cofactors on in vitro 30S subunit reconstitution
    • Bunner AE, Nord S, Wikstrom PM, Williamson JR (2010) The effect of ribosome assembly cofactors on in vitro 30S subunit reconstitution. J Mol Biol 398:1-7.
    • (2010) J Mol Biol , vol.398 , pp. 1-7
    • Bunner, A.E.1    Nord, S.2    Wikstrom, P.M.3    Williamson, J.R.4
  • 21
    • 0016321036 scopus 로고
    • Methylation of 16S RNA during ribosome assembly in vitro
    • Thammana P, Held WA (1974) Methylation of 16S RNA during ribosome assembly in vitro. Nature 251:682-686.
    • (1974) Nature , vol.251 , pp. 682-686
    • Thammana, P.1    Held, W.A.2
  • 22
    • 61449176110 scopus 로고    scopus 로고
    • Structural basis for binding of RNA and cofactor by a KsgA methyltransferase
    • Tu C, et al. (2009) Structural basis for binding of RNA and cofactor by a KsgA methyltransferase. Structure 17:374-385.
    • (2009) Structure , vol.17 , pp. 374-385
    • Tu, C.1
  • 23
    • 0031705811 scopus 로고    scopus 로고
    • The gene for 16S rRNA methyltransferase (ksgA) functions as a multicopy suppressor for a cold-sensitive mutant of era, an essential RAS-like GTP- Binding protein in Escherichia coli
    • Lu Q, Inouye M (1998) The gene for 16S rRNA methyltransferase (ksgA) functions as a multicopy suppressor for a cold-sensitive mutant of era, an essential RAS-like GTP-binding protein in Escherichia coli. J Bacteriol 180:5243-5246. (Pubitemid 28470956)
    • (1998) Journal of Bacteriology , vol.180 , Issue.19 , pp. 5243-5246
    • Lu, Q.1    Inouye, M.2
  • 24
    • 64049113157 scopus 로고    scopus 로고
    • Sequence and structural evolution of the KsgA/Dim1 methyltransferase family
    • O'Farrell HC, Xu Z, Culver GM, Rife JP (2008) Sequence and structural evolution of the KsgA/Dim1 methyltransferase family. BMC Res Notes 1:108.
    • (2008) BMC Res Notes , vol.1 , pp. 108
    • O'Farrell, H.C.1    Xu, Z.2    Culver, G.M.3    Rife, J.P.4
  • 25
    • 36749000444 scopus 로고    scopus 로고
    • Dissection of 16S rRNA methyltransferase (KsgA) function in Escherichia coli
    • DOI 10.1128/JB.01259-07
    • Inoue K, Basu S, Inouye M (2007) Dissection of 16S rRNA methyltransferase (KsgA) function in Escherichia coli. J Bacteriol 189:8510-8518. (Pubitemid 350210020)
    • (2007) Journal of Bacteriology , vol.189 , Issue.23 , pp. 8510-8518
    • Inoue, K.1    Basu, S.2    Inouye, M.3
  • 26
    • 43549124851 scopus 로고    scopus 로고
    • Structure and function of KH domains
    • DOI 10.1111/j.1742-4658.2008.06411.x
    • Valverde R, Edwards L, Regan L (2008) Structure and function of KH domains. FEBS J 275:2712-2726. (Pubitemid 351678660)
    • (2008) FEBS Journal , vol.275 , Issue.11 , pp. 2712-2726
    • Valverde, R.1    Edwards, L.2    Regan, L.3
  • 27
    • 0025193516 scopus 로고
    • Expression and characterization of RNase III and Era proteins products of the rnc operon of Escherichia coli
    • Chen SM, et al. (1990) Expression and characterization of RNase III and Era proteins products of the rnc operon of Escherichia coli. J Biol Chem 265:2888-2895.
    • (1990) J Biol Chem , vol.265 , pp. 2888-2895
    • Chen, S.M.1
  • 30
    • 0026752980 scopus 로고
    • Eukaryotic initiation factor 3 does not prevent association through physical blockage of the ribosomal subunit-subunit interface
    • Srivastava S, Verschoor A, Frank J (1992) Eukaryotic initiation factor 3 does not prevent association through physical blockage of the ribosomal subunit-subunit interface. J Mol Biol 226:301-304.
    • (1992) J Mol Biol , vol.226 , pp. 301-304
    • Srivastava, S.1    Verschoor, A.2    Frank, J.3
  • 31
    • 0033551178 scopus 로고    scopus 로고
    • Location of translational initiation factor IF3 on the small ribosomal subunit
    • McCutcheon JP, et al. (1999) Location of translational initiation factor IF3 on the small ribosomal subunit. Proc Natl Acad Sci USA 96:4301-4306.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 4301-4306
    • McCutcheon, J.P.1
  • 32
    • 0034759978 scopus 로고    scopus 로고
    • Interaction of translation initiation factor 3 with the 30S ribosomal subunit
    • DOI 10.1016/S1097-2765(01)00356-2
    • Dallas A, Noller HF (2001) Interaction of translation initiation factor 3 with the 30S ribosomal subunit. Mol Cell 8:855-864. (Pubitemid 33030218)
    • (2001) Molecular Cell , vol.8 , Issue.4 , pp. 855-864
    • Dallas, A.1    Noller, H.F.2
  • 33
    • 0028114104 scopus 로고
    • Contacts between 16S ribosomal RNA and mRNA, within the spacer region separating the AUG initiator codon and the Shine-Dalgarno sequence; A site-directed cross-linking study
    • Rinke-Appel J, et al. (1994) Contacts between 16S ribosomal RNA and mRNA, within the spacer region separating the AUG initiator codon and the Shine-Dalgarno sequence; a site-directed cross-linking study. Nucleic Acids Res 22:3018-3025. (Pubitemid 24260630)
    • (1994) Nucleic Acids Research , vol.22 , Issue.15 , pp. 3018-3025
    • Rinke-Appel, J.1    Junke, N.2    Brimacombe, R.3    Lavrik, I.4    Dokudovskaya, S.5    Dontsova, O.6    Bogdanov, A.7
  • 35
    • 59849119654 scopus 로고    scopus 로고
    • Recombineering: A homologous recombination-based method of genetic engineering
    • Sharan SK, Thomason LC, Kuznetsov SG, Court DL (2009) Recombineering: A homologous recombination-based method of genetic engineering. Nat Protoc 4:206-223.
    • (2009) Nat Protoc , vol.4 , pp. 206-223
    • Sharan, S.K.1    Thomason, L.C.2    Kuznetsov, S.G.3    Court, D.L.4


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