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Volumn 70, Issue 5, 2008, Pages 1062-1075

Mechanistic insight into the ribosome biogenesis functions of the ancient protein KsgA

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE DERIVATIVE; BACTERIAL PROTEIN; METHYLTRANSFERASE; PROTEIN KSGA; PROTEIN SUBUNIT; RIBOSOME RNA; UNCLASSIFIED DRUG;

EID: 55349106559     PISSN: 0950382X     EISSN: 13652958     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2008.06485.x     Document Type: Article
Times cited : (125)

References (45)
  • 1
    • 31544450286 scopus 로고    scopus 로고
    • Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: The Keio collection
    • Baba, T., Ara, T., Hasegawa, M., Takai, Y., Okumura, Y., Baba, M., et al 2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol 2 : 2006.0008.
    • (2006) Mol Syst Biol , vol.2 , pp. 20060008
    • Baba, T.1    Ara, T.2    Hasegawa, M.3    Takai, Y.4    Okumura, Y.5    Baba, M.6    Al, E.7
  • 2
    • 0029044829 scopus 로고
    • The structure of ribosomal RNA: A three-dimensional jigsaw puzzle
    • Brimacombe, R. (1995) The structure of ribosomal RNA: a three-dimensional jigsaw puzzle. Eur J Biochem 230 : 365 383.
    • (1995) Eur J Biochem , vol.230 , pp. 365-383
    • Brimacombe, R.1
  • 3
    • 0021722248 scopus 로고
    • Increased translational fidelity caused by the antibiotic kasugamycin and ribosomal ambiguity in mutants harbouring the ksgA gene
    • van Buul, C.P., Visser, W. van Knippenberg, P.H. (1984) Increased translational fidelity caused by the antibiotic kasugamycin and ribosomal ambiguity in mutants harbouring the ksgA gene. FEBS Lett 177 : 119 124.
    • (1984) FEBS Lett , vol.177 , pp. 119-124
    • Van Buul, C.P.1    Visser, W.2    Van Knippenberg, P.H.3
  • 4
    • 0031973622 scopus 로고    scopus 로고
    • RimM and RbfA are essential for efficient processing of 16S rRNA in Escherichia coli
    • Bylund, G.O., Wipemo, L.C., Lundberg, L.A. Wikstrom, P.M. (1998) RimM and RbfA are essential for efficient processing of 16S rRNA in Escherichia coli. J Bacteriol 180 : 73 82.
    • (1998) J Bacteriol , vol.180 , pp. 73-82
    • Bylund, G.O.1    Wipemo, L.C.2    Lundberg, L.A.3    Wikstrom, P.M.4
  • 5
    • 41549110324 scopus 로고    scopus 로고
    • Genetic interaction screens with ordered overexpression and deletion clone sets implicate the Escherichia coli GTPase YjeQ in late ribosome biogenesis
    • Campbell, T.L. Brown, E.D. (2008) Genetic interaction screens with ordered overexpression and deletion clone sets implicate the Escherichia coli GTPase YjeQ in late ribosome biogenesis. J Bacteriol 190 : 2537 2545.
    • (2008) J Bacteriol , vol.190 , pp. 2537-2545
    • Campbell, T.L.1    Brown, E.D.2
  • 6
    • 0025111089 scopus 로고
    • Site-specific mutation of the conserved m6(2)A m6(2)A residues of E. coli 16S ribosomal RNA. Effects on ribosome function and activity of the ksgA methyltransferase
    • Cunningham, P.R., Weitzmann, C.J., Nurse, K., Masurel, R., Van Knippenberg, P.H. Ofengand, J. (1990) Site-specific mutation of the conserved m6(2)A m6(2)A residues of E. coli 16S ribosomal RNA. Effects on ribosome function and activity of the ksgA methyltransferase. Biochim Biophys Acta 1050 : 18 26.
    • (1990) Biochim Biophys Acta , vol.1050 , pp. 18-26
    • Cunningham, P.R.1    Weitzmann, C.J.2    Nurse, K.3    Masurel, R.4    Van Knippenberg, P.H.5    Ofengand, J.6
  • 7
    • 0025773644 scopus 로고
    • The absence of modified nucleotides affects both in vitro assembly and in vitro function of the 30S ribosomal subunit of Escherichia coli
    • Cunningham, P.R., Richard, R.B., Weitzmann, C.J., Nurse, K. Ofengand, J. (1991) The absence of modified nucleotides affects both in vitro assembly and in vitro function of the 30S ribosomal subunit of Escherichia coli. Biochimie 73 : 789 796.
    • (1991) Biochimie , vol.73 , pp. 789-796
    • Cunningham, P.R.1    Richard, R.B.2    Weitzmann, C.J.3    Nurse, K.4    Ofengand, J.5
  • 8
    • 0028906075 scopus 로고
    • Suppression of a cold-sensitive mutation in 16S rRNA by overexpression of a novel ribosome-binding factor, RbfA
    • Dammel, C.S. Noller, H.F. (1995) Suppression of a cold-sensitive mutation in 16S rRNA by overexpression of a novel ribosome-binding factor, RbfA. Genes Dev 9 : 626 637.
    • (1995) Genes Dev , vol.9 , pp. 626-637
    • Dammel, C.S.1    Noller, H.F.2
  • 10
    • 0024397726 scopus 로고
    • Autogenous regulation of the Escherichia coli ksgA gene at the level of translation
    • van Gemen, B., Twisk, J. van Knippenberg, P.H. (1989) Autogenous regulation of the Escherichia coli ksgA gene at the level of translation. J Bacteriol 171 : 4002 4008.
    • (1989) J Bacteriol , vol.171 , pp. 4002-4008
    • Van Gemen, B.1    Twisk, J.2    Van Knippenberg, P.H.3
  • 11
    • 0014528642 scopus 로고
    • Structure and function of E. coli ribosomes. 8. Cold-sensitive mutants defective in ribosome assembly
    • Guthrie, C., Nashimoto, H. Nomura, M. (1969) Structure and function of E. coli ribosomes. 8. Cold-sensitive mutants defective in ribosome assembly. Proc Natl Acad Sci USA 63 : 384 391.
    • (1969) Proc Natl Acad Sci USA , vol.63 , pp. 384-391
    • Guthrie, C.1    Nashimoto, H.2    Nomura, M.3
  • 12
    • 0017273722 scopus 로고
    • Processing of the 17-S Escherichia coli precursor RNA in the 27-S pre-ribosomal particle
    • Hayes, F. Vasseur, M. (1976) Processing of the 17-S Escherichia coli precursor RNA in the 27-S pre-ribosomal particle. Eur J Biochem 61 : 433 442.
    • (1976) Eur J Biochem , vol.61 , pp. 433-442
    • Hayes, F.1    Vasseur, M.2
  • 13
    • 0015494418 scopus 로고
    • Mechanism of kasugamycin resistance in Escherichia coli
    • Helser, T.L., Davies, J.E. Dahlberg, J.E. (1972) Mechanism of kasugamycin resistance in Escherichia coli. Nat New Biol 235 : 6 9.
    • (1972) Nat New Biol , vol.235 , pp. 6-9
    • Helser, T.L.1    Davies, J.E.2    Dahlberg, J.E.3
  • 14
    • 0019477765 scopus 로고
    • Relationship between methylation of adenine near the 3′ end of 16-S ribosomal RNA and the activity of 30-S ribosomal subunits
    • Igarashi, K., Kishida, K., Kashiwagi, K., Tatokoro, I., Kakegawa, T. Hirose, S. (1981) Relationship between methylation of adenine near the 3′ end of 16-S ribosomal RNA and the activity of 30-S ribosomal subunits. Eur J Biochem 113 : 587 593.
    • (1981) Eur J Biochem , vol.113 , pp. 587-593
    • Igarashi, K.1    Kishida, K.2    Kashiwagi, K.3    Tatokoro, I.4    Kakegawa, T.5    Hirose, S.6
  • 15
    • 0038016743 scopus 로고    scopus 로고
    • Suppression of defective ribosome assembly in a rbfA deletion mutant by overexpression of Era, an essential GTPase in Escherichia coli
    • Inoue, K., Alsina, J., Chen, J. Inouye, M. (2003) Suppression of defective ribosome assembly in a rbfA deletion mutant by overexpression of Era, an essential GTPase in Escherichia coli. Mol Microbiol 48 : 1005 1016.
    • (2003) Mol Microbiol , vol.48 , pp. 1005-1016
    • Inoue, K.1    Alsina, J.2    Chen, J.3    Inouye, M.4
  • 16
    • 33745757322 scopus 로고    scopus 로고
    • Era and RbfA have overlapping function in ribosome biogenesis in Escherichia coli
    • Inoue, K., Chen, J., Tan, Q. Inouye, M. (2006) Era and RbfA have overlapping function in ribosome biogenesis in Escherichia coli. J Mol Microbiol Biotechnol 11 : 41 52.
    • (2006) J Mol Microbiol Biotechnol , vol.11 , pp. 41-52
    • Inoue, K.1    Chen, J.2    Tan, Q.3    Inouye, M.4
  • 17
    • 36749000444 scopus 로고    scopus 로고
    • Dissection of 16S rRNA methyltransferase (KsgA) function in Escherichia coli
    • Inoue, K., Basu, S. Inouye, M. (2007) Dissection of 16S rRNA methyltransferase (KsgA) function in Escherichia coli. J Bacteriol 189 : 8510 8518.
    • (2007) J Bacteriol , vol.189 , pp. 8510-8518
    • Inoue, K.1    Basu, S.2    Inouye, M.3
  • 18
    • 34548728025 scopus 로고    scopus 로고
    • Ribosome biogenesis and the translation process in Escherichia coli
    • Kaczanowska, M. Ryden-Aulin, M. (2007) Ribosome biogenesis and the translation process in Escherichia coli. Microbiol Mol Biol Rev 71 : 477 494.
    • (2007) Microbiol Mol Biol Rev , vol.71 , pp. 477-494
    • Kaczanowska, M.1    Ryden-Aulin, M.2
  • 19
    • 0008882290 scopus 로고
    • Secondary methylation of yeast ribosomal RNA
    • Klootwijk, J., van den Bos, R.C. Planta, R.J. (1972) Secondary methylation of yeast ribosomal RNA. FEBS Lett 27 : 102 106.
    • (1972) FEBS Lett , vol.27 , pp. 102-106
    • Klootwijk, J.1    Van Den Bos, R.C.2    Planta, R.J.3
  • 20
    • 0028086499 scopus 로고
    • The DIM1 gene responsible for the conserved m6(2)Am6(2)A dimethylation in the 3′-terminal loop of 18S rRNA is essential in yeast
    • Lafontaine, D., Delcour, J., Glasser, A.L., Desgres, J. Vandenhaute, J. (1994) The DIM1 gene responsible for the conserved m6(2)Am6(2)A dimethylation in the 3′-terminal loop of 18S rRNA is essential in yeast. J Mol Biol 241 : 492 497.
    • (1994) J Mol Biol , vol.241 , pp. 492-497
    • Lafontaine, D.1    Delcour, J.2    Glasser, A.L.3    Desgres, J.4    Vandenhaute, J.5
  • 21
    • 0028866774 scopus 로고
    • The 18S rRNA dimethylase Dim1p is required for pre-ribosomal RNA processing in yeast
    • Lafontaine, D., Vandenhaute, J. Tollervey, D. (1995) The 18S rRNA dimethylase Dim1p is required for pre-ribosomal RNA processing in yeast. Genes Dev 9 : 2470 2481.
    • (1995) Genes Dev , vol.9 , pp. 2470-2481
    • Lafontaine, D.1    Vandenhaute, J.2    Tollervey, D.3
  • 22
    • 0031944479 scopus 로고    scopus 로고
    • Yeast 18S rRNA dimethylase Dim1p: A quality control mechanism in ribosome synthesis?
    • Lafontaine, D.L., Preiss, T. Tollervey, D. (1998) Yeast 18S rRNA dimethylase Dim1p: a quality control mechanism in ribosome synthesis? Mol Cell Biol 18 : 2360 2370.
    • (1998) Mol Cell Biol , vol.18 , pp. 2360-2370
    • Lafontaine, D.L.1    Preiss, T.2    Tollervey, D.3
  • 23
    • 0033577789 scopus 로고    scopus 로고
    • RNase G (CafA protein) and RNase e are both required for the 5′ maturation of 16S ribosomal RNA
    • Li, Z., Pandit, S. Deutscher, M.P. (1999) RNase G (CafA protein) and RNase E are both required for the 5′ maturation of 16S ribosomal RNA. EMBO J 18 : 2878 2885.
    • (1999) EMBO J , vol.18 , pp. 2878-2885
    • Li, Z.1    Pandit, S.2    Deutscher, M.P.3
  • 24
    • 0031705811 scopus 로고    scopus 로고
    • The gene for 16S rRNA methyltransferase (ksgA) functions as a multicopy suppressor for a cold-sensitive mutant of era, an essential RAS-like GTP-binding protein in Escherichia coli
    • Lu, Q. Inouye, M. (1998) The gene for 16S rRNA methyltransferase (ksgA) functions as a multicopy suppressor for a cold-sensitive mutant of era, an essential RAS-like GTP-binding protein in Escherichia coli. J Bacteriol 180 : 5243 5246.
    • (1998) J Bacteriol , vol.180 , pp. 5243-5246
    • Lu, Q.1    Inouye, M.2
  • 25
    • 0036342369 scopus 로고    scopus 로고
    • The DnaK chaperone system facilitates 30S ribosomal subunit assembly
    • Maki, J.A., Schnobrich, D.J. Culver, G.M. (2002) The DnaK chaperone system facilitates 30S ribosomal subunit assembly. Mol Cell 10 : 129 138.
    • (2002) Mol Cell , vol.10 , pp. 129-138
    • Maki, J.A.1    Schnobrich, D.J.2    Culver, G.M.3
  • 26
  • 27
    • 0022980288 scopus 로고
    • Interconversion of active and inactive 30S ribosomal subunits is accompanied by a conformational change in the decoding region of 16S rRNA
    • Moazed, D., Van Stolk, B.J., Douthwaite, S. Noller, H.F. (1986) Interconversion of active and inactive 30S ribosomal subunits is accompanied by a conformational change in the decoding region of 16S rRNA. J Mol Biol 191 : 483 493.
    • (1986) J Mol Biol , vol.191 , pp. 483-493
    • Moazed, D.1    Van Stolk, B.J.2    Douthwaite, S.3    Noller, H.F.4
  • 28
    • 0015243809 scopus 로고
    • Structure and function of bacterial ribosomes. XII. Accumulation of 21s particles by some cold-sensitive mutants of Escherichia coli
    • Nashimoto, H., Held, W., Kaltschmidt, E. Nomura, M. (1971) Structure and function of bacterial ribosomes. XII. Accumulation of 21s particles by some cold-sensitive mutants of Escherichia coli. J Mol Biol 62 : 121 138.
    • (1971) J Mol Biol , vol.62 , pp. 121-138
    • Nashimoto, H.1    Held, W.2    Kaltschmidt, E.3    Nomura, M.4
  • 29
    • 0032455220 scopus 로고    scopus 로고
    • Posttranscriptional modifications in 16S and 23S rRNAs of the archaeal hyperthermophile Sulfolobus solfataricus
    • Noon, K.R., Bruenger, E. McCloskey, J.A. (1998) Posttranscriptional modifications in 16S and 23S rRNAs of the archaeal hyperthermophile Sulfolobus solfataricus. J Bacteriol 180 : 2883 2888.
    • (1998) J Bacteriol , vol.180 , pp. 2883-2888
    • Noon, K.R.1    Bruenger, E.2    McCloskey, J.A.3
  • 30
    • 2342650072 scopus 로고    scopus 로고
    • Crystal structure of KsgA, a universally conserved rRNA adenine dimethyltransferase in Escherichia coli
    • O'Farrell, H.C., Scarsdale, J.N. Rife, J.P. (2004) Crystal structure of KsgA, a universally conserved rRNA adenine dimethyltransferase in Escherichia coli. J Mol Biol 339 : 337 353.
    • (2004) J Mol Biol , vol.339 , pp. 337-353
    • O'Farrell, H.C.1    Scarsdale, J.N.2    Rife, J.P.3
  • 31
    • 0037029086 scopus 로고    scopus 로고
    • Ribosomal RNA pseudouridines and pseudouridine synthases
    • Ofengand, J. (2002) Ribosomal RNA pseudouridines and pseudouridine synthases. FEBS Lett 514 : 17 25.
    • (2002) FEBS Lett , vol.514 , pp. 17-25
    • Ofengand, J.1
  • 32
    • 0036182097 scopus 로고    scopus 로고
    • Positive growth rate-dependent regulation of the pdxA, ksgA, and pdxB genes of Escherichia coli K-12
    • Pease, A.J., Roa, B.R., Luo, W. Winkler, M.E. (2002) Positive growth rate-dependent regulation of the pdxA, ksgA, and pdxB genes of Escherichia coli K-12. J Bacteriol 184 : 1359 1369.
    • (2002) J Bacteriol , vol.184 , pp. 1359-1369
    • Pease, A.J.1    Roa, B.R.2    Luo, W.3    Winkler, M.E.4
  • 33
    • 0018686494 scopus 로고
    • Studies on the function of two adjacent N6,N6-dimethyladenosines near the 3′ end of 16S ribosomal RNA of Escherichia coli. II. the effect of the absence of the methyl groups on initiation of protein biosynthesis
    • Poldermans, B., Van Buul, C.P. Van Knippenberg, P.H. (1979a) Studies on the function of two adjacent N6,N6-dimethyladenosines near the 3′ end of 16S ribosomal RNA of Escherichia coli. II. The effect of the absence of the methyl groups on initiation of protein biosynthesis. J Biol Chem 254 : 9090 9093.
    • (1979) J Biol Chem , vol.254 , pp. 9090-9093
    • Poldermans, B.1    Van Buul, C.P.2    Van Knippenberg, P.H.3
  • 34
    • 0018690149 scopus 로고
    • Studies on the function of two adjacent N6,N6-dimethyladenosines near the 3′ end of 16S ribosomal RNA of Escherichia coli. I. the effect of kasugamycin on initiation of protein synthesis
    • Poldermans, B., Goosen, N. Van Knippenberg, P.H. (1979b) Studies on the function of two adjacent N6,N6-dimethyladenosines near the 3′ end of 16S ribosomal RNA of Escherichia coli. I. The effect of kasugamycin on initiation of protein synthesis. J Biol Chem 254 : 9085 9089.
    • (1979) J Biol Chem , vol.254 , pp. 9085-9089
    • Poldermans, B.1    Goosen, N.2    Van Knippenberg, P.H.3
  • 35
    • 0018698756 scopus 로고
    • Studies on the function of two adjacent N6,N6-dimethyladenosines near the 3′ end of 16S ribosomal RNA of Escherichia coli. III. Purification and properties of the methylating enzyme and methylase-30S interactions
    • Poldermans, B., Roza, L. Van Knippenberg, P.H. (1979c) Studies on the function of two adjacent N6,N6-dimethyladenosines near the 3′ end of 16S ribosomal RNA of Escherichia coli. III. Purification and properties of the methylating enzyme and methylase-30S interactions. J Biol Chem 254 : 9094 9100.
    • (1979) J Biol Chem , vol.254 , pp. 9094-9100
    • Poldermans, B.1    Roza, L.2    Van Knippenberg, P.H.3
  • 36
    • 0024730183 scopus 로고
    • Overlap between pdxA and ksgA in the complex pdxA-ksgA-apaG-apaH operon of Escherichia coli K-12
    • Roa, B.B., Connolly, D.M. Winkler, M.E. (1989) Overlap between pdxA and ksgA in the complex pdxA-ksgA-apaG-apaH operon of Escherichia coli K-12. J Bacteriol 171 : 4767 4777.
    • (1989) J Bacteriol , vol.171 , pp. 4767-4777
    • Roa, B.B.1    Connolly, D.M.2    Winkler, M.E.3
  • 37
    • 0027483417 scopus 로고
    • Ribosome activity and modification of 16S RNA are influenced by deletion of ribosomal protein S20
    • Ryden-Aulin, M., Shaoping, Z., Kylsten, P. Isaksson, L.A. (1993) Ribosome activity and modification of 16S RNA are influenced by deletion of ribosomal protein S20. Mol Microbiol 7 : 983 992.
    • (1993) Mol Microbiol , vol.7 , pp. 983-992
    • Ryden-Aulin, M.1    Shaoping, Z.2    Kylsten, P.3    Isaksson, L.A.4
  • 39
    • 0014929597 scopus 로고
    • Kasugamycin resistance: 30S ribosomal mutation with an unusual location on the Escherichia coli chromosome
    • Sparling, P.F. (1970) Kasugamycin resistance: 30S ribosomal mutation with an unusual location on the Escherichia coli chromosome. Science 167 : 56 58.
    • (1970) Science , vol.167 , pp. 56-58
    • Sparling, P.F.1
  • 40
    • 0025153770 scopus 로고
    • Mechanism and regulation of bacterial ribosomal RNA processing
    • Srivastava, A.K. Schlessinger, D. (1990) Mechanism and regulation of bacterial ribosomal RNA processing. Annu Rev Microbiol 44 : 105 129.
    • (1990) Annu Rev Microbiol , vol.44 , pp. 105-129
    • Srivastava, A.K.1    Schlessinger, D.2
  • 41
    • 0020479473 scopus 로고
    • Euglena gracilis chloroplast small subunit rRNA. Sequence and base pairing potential of the 3′ terminus, cleavage by colicin E3
    • Steege, D.A., Graves, M.C. Spremulli, L.L. (1982) Euglena gracilis chloroplast small subunit rRNA. Sequence and base pairing potential of the 3′ terminus, cleavage by colicin E3. J Biol Chem 257 : 10430 10439.
    • (1982) J Biol Chem , vol.257 , pp. 10430-10439
    • Steege, D.A.1    Graves, M.C.2    Spremulli, L.L.3
  • 42
    • 0016321036 scopus 로고
    • Methylation of 16S RNA during ribosome assembly in vitro
    • Thammana, P. Held, W.A. (1974) Methylation of 16S RNA during ribosome assembly in vitro. Nature 251 : 682 686.
    • (1974) Nature , vol.251 , pp. 682-686
    • Thammana, P.1    Held, W.A.2
  • 43
    • 0021760747 scopus 로고
    • Partial methylation of two adjacent adenosines in ribosomes from Euglena gracilis chloroplasts suggests evolutionary loss of an intermediate stage in the methyl-transfer reaction
    • Van Buul, C.P., Hamersma, M., Visser, W. Van Knippenberg, P.H. (1984) Partial methylation of two adjacent adenosines in ribosomes from Euglena gracilis chloroplasts suggests evolutionary loss of an intermediate stage in the methyl-transfer reaction. Nucleic Acids Res 12 : 9205 9208.
    • (1984) Nucleic Acids Res , vol.12 , pp. 9205-9208
    • Van Buul, C.P.1    Hamersma, M.2    Visser, W.3    Van Knippenberg, P.H.4
  • 44
    • 0021771170 scopus 로고
    • Phylogeny of the conserved 3′ terminal structure of the RNA of small ribosomal subunits
    • Van Knippenberg, P.H., Van Kimmenade, J.M. Heus, H.A. (1984) Phylogeny of the conserved 3′ terminal structure of the RNA of small ribosomal subunits. Nucleic Acids Res 12 : 2595 2604.
    • (1984) Nucleic Acids Res , vol.12 , pp. 2595-2604
    • Van Knippenberg, P.H.1    Van Kimmenade, J.M.2    Heus, H.A.3
  • 45
    • 43249093216 scopus 로고    scopus 로고
    • A conserved rRNA methyltransferase regulates ribosome biogenesis
    • Xu, Z., O'Farrell, H.C., Rife, J.P. Culver, G.M. (2008) A conserved rRNA methyltransferase regulates ribosome biogenesis. Nat Struct Mol Biol 15 : 534 536.
    • (2008) Nat Struct Mol Biol , vol.15 , pp. 534-536
    • Xu, Z.1    O'Farrell, H.C.2    Rife, J.P.3    Culver, G.M.4


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