Genetic structure and diversity of Phakopsora pachyrhizi isolates from soyabean

Plant Pathology

Volumn 60, Issue 4, 2011, Pages 719-729

  Twizeyimana, M ^a   Ojiambo, P S ^b   Haudenshield, J S ^c   Caetano Anolles G ^a   Pedley, K F ^c   Bandyopadhyay, R ^d   Hartman, G L ^a,b  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^b NORTH CAROLINA STATE UNIVERSITY   (United States)

^c AGRICULTURAL RESEARCH SERVICE   (United States)

^d INTERNATIONAL INSTITUTE OF TROPICAL AGRICULTURE   (Nigeria)

Author keywords

Glycine max; Population biology; Soyabean; Soyabean rust; SSR genotype; Virulence phenotype

Indexed keywords

AGRICULTURAL LAND; AGROECOLOGY; ASEXUAL REPRODUCTION; GENETIC STRUCTURE; GENETIC VARIATION; GENOTYPE; PHENOTYPE; PHYLOGENETICS; POPULATION ECOLOGY; RUST DISEASE; SOYBEAN; SPECIES DIVERSITY; VIRULENCE;

NIGERIA;

GLYCINE MAX; PHAKOPSORA PACHYRHIZI;

EID: 79959934442     PISSN: 00320862     EISSN: 13653059     Source Type: Journal    
DOI: 10.1111/j.1365-3059.2011.02428.x     Document Type: Article

References (42)

1. Akinsanmi OA, Ladipo JL, Oyekan PO, 2001. First report of soybean rust (Phakopsora pachyrhizi) in Nigeria. Plant Disease 85, 97.
2. Anderson SJ, Stone CL, Posada-Buitrago ML et al., 2008. Simple sequence repeat markers for differentiating and evaluating genetic diversity of soybean rust isolates. Molecular Ecology Resources 8, 1310-2.
3. Bonde MR, Nester SE, Austin CN et al., 2006. Evaluation of virulence of Phakopsora pachyrhizi and P. meibomiae isolates. Plant Disease 90, 708-16.
4. Brake VM, Irwin JAG, Park RF, 2001. Genetic variability in Australian isolates of Puccinia coronata f. sp. avenae assessed with molecular markers and pathogenicity markers. Australasian Plant Pathology 30, 259-66.
5. Brasier CM, 1988. Rapid changes in genetic structure of epidemic populations of Ophiostoma ulmi. Nature 332, 538-41.
6. Bromfield KR, Melching JS, Kingsolver CH, 1980. Virulence and aggressiveness of Phakopsora pachyrhizi isolates causing soybean rust. Phytopathology 70, 17-21.
7. Brown JKM, 1994. Chance and selection in the evolution of barley mildew. Trends in Microbiology 2, 470-5.
8. Brown JKM, 1995. Pathogens' responses to the management of disease resistance genes. Advances in Plant Pathology 11, 75-102.
9. Brown JKM, Hovmøller MS, 2002. Aerial dispersal of pathogens on the global and continental scales and its impact on plant disease. Science 297, 537-41.
10. Burt A, Carter DA, Koenig GL, White TJ, Taylor JW, 1996. Molecular markers reveal cryptic sex in the human pathogen Coccidioides immitis. Proceedings of the National Academy of Sciences, USA 93, 770-3.
11. Enjalbert J, Duan M, Leconte M, Hovmøller MS, de Vallavieille-Pope C, 2005. Genetic evidence of local adaptation of wheat yellow rust (Puccinia striiformis f. sp. tritici) within France. Molecular Ecology 14, 2065-73.
12. Frederick RD, Snyder C, Peterson GL, Bonde MR, 2002. Polymerase chain reaction assays for the detection and discrimination of the soybean rust pathogens Phakopsora pachyrhizi and P. meibomeae. Phytopathology 92, 217-27.
13. Hartman GL, Wang TC, Tschanz AT, 1991. Soybean rust development and the quantitative relationship between rust severity and soybean yield. Plant Disease 75, 596-600.
14. Hartman GL, Miles MR, Frederick RD, 2005. Breeding for resistance to soybean rust. Plant Disease 89, 664-6.
15. Haudenshield JS, Hartman GL, 2011. Exogenous controls to increase negative call veracity in multiplexed, quantitative PCR assays for Phakopsora pachyrhizi. Plant Disease DOI.
16. Hovmøller MS, Justesen AF, 2007. Rates of evolution of avirulence phenotypes and DNA markers in a northwest European population of Puccinia striiformis f. sp. tritici. Molecular Ecology 16, 4637-47.
17. Hovmøller MS, Justesen AF, Brown JKM, 2002. Clonality and long-distance migration of Puccinia striiformis f. sp. tritici in north-west Europe. Plant Pathology 51, 24-32.
18. Hovmøller MS, Yahyaoui AH, Milus EA, Justesen AF, 2008. Rapid global spread of two aggressive strains of a wheat rust fungus. Molecular Ecology 17, 3818-26.
19. Isard SA, Gage SH, Comtois P, Russo JM, 2005. Principles of the atmospheric pathway for invasive species applied to soybean rust. BioScience 55, 851-62.
20. Justesen AF, Ridout CJ, Hovmøller MS, 2002. The recent history of Puccinia striiformis f. sp. tritici in Denmark as revealed by disease incidence and AFLP markers. Plant Pathology 51, 13-23.
21. Keiper FJ, Haque MS, Hayden MJ, Park RF, 2006. Genetic diversity in Australian populations of Puccinia graminis f. sp. avenae. Phytopathology 96, 96-104.
22. Keller SM, McDermott JM, Pettway RE, Wolfe MS, McDonald BA, 1997. Gene flow and sexual reproduction in the wheat glume blotch pathogen Phaeosphaeria nodorum (anamorph Stagonospora nodorum). Phytopathology 87, 353-8.
23. Levy M, Correa-Victoria FJ, Zeigler RS, Xu S, Hamer JE, 1993. Genetic diversity of the rice blast fungus in disease nursery in Colombia. Phytopathology 83, 1427-33.
24. McDonald BA, 1997. The population genetics of fungi: tools and techniques. Phytopathology 87, 448-53.
25. McDonald BA, McDermott JM, Allard RW, Webster RK, 1989. Coevolution of host and pathogen populations in the Hordeum vulgare-Rhynchosporium secalis pathosystem. Proceedings of the National Academy of Sciences, USA 86, 3924-7.
26. Nei M, 1972. Genetic distance between populations. American Naturalist 106, 283-92.
27. Nei M, 1973. Analysis of gene diversity in subdivided populations. Proceedings of the National Academy of Sciences, USA 70, 3321-3.
28. Ono Y, Buritica P, Hennen JF, 1992. Delimitation of Phakopsora, Physopella and Cerotelium and their species on Leguminosae. Mycological Research 96, 825-50.
29. Park RF, Burdon JJ, McIntosh RA, 1995. Studies on the origin, spread, and evolution of an important group of Puccinia recondita f. sp. tritici pathotypes in Australasia. European Journal of Plant Pathology 101, 613-22.
30. Paul C, Hartman GL, 2009. Sources of soybean rust resistance challenged with single-spored isolates of Phakopsora pachyrhizi collected from the USA. Crop Science 49, 1781-5.
31. Peakall R, Smouse PE, 2006. GenAlEx6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes 6, 288-95.
32. Pham TA, Miles MR, Frederick RD, Hill CB, Hartman GL, 2009. Differential responses of resistant soybean genotypes to ten isolates of Phakopsora pachyrhizi. Plant Disease 93, 224-8.
33. Ribeiro AS, Moreira JUV, Pierozzi PHB et al., 2007. Genetic control of Asian rust in soybean. Euphytica 157, 15-25.
34. Tian G, Kolawole GO, Ishida F, Carsky RJ, 2000. On-farm study of Pueraria cover-crop fallow system in the derived savanna of West Africa. In: Carsky RJ, Etèka AC, Keatinge JDH, Manyong VM, eds. Cover Crops for Natural Resource Management in West Africa. Ibadan, Nigeria: International Institute of Tropical Agriculture, 185-93.
35. Twizeyimana M, Ojiambo PS, Ikotun T, Paul C, Hartman GL, Bandyopadhyay R, 2007. Comparison of field, greenhouse, and detached-leaf evaluations of soybean germplasm for resistance to Phakopsora pachyrhizi. Plant Disease 91, 1161-9.
36. Twizeyimana M, Ojiambo PS, Ikotun T, Ladipo JL, Hartman GL, Bandyopadhyay R, 2008. Evaluation of soybean germplasm for resistance to soybean rust (Phakopsora pachyrhizi) in Nigeria. Plant Disease 92, 947-52.
37. Twizeyimana M, Ojiambo PS, Sonder K, Ikotun T, Hartman GL, Bandyopadhyay R, 2009. Pathogenic variation of Phakopsora pachyrhizi infecting soybean in Nigeria. Phytopathology 99, 353-61.
38. Wellings CR, Burdon JJ, McIntosh RA, Wallwork H, Raman H, Murray GM, 2000. A new variant of Puccinia striiformis causing stripe rust on barley and wild Hordeum species in Australia. Plant Pathology 49, 803.
39. Wingen LU, Brown JKM, Shaw MW, 2007. The population genetic structure of clonal organisms generated by exponentially bounded and fat-tailed dispersal. Genetics 177, 435-48.
40. Yamaoka Y, Fujiwars Y, Kakishima M, Katsuya K, Yamada K, 2002. Pathogenic races of Phakopsora pachyrhizi on soybean and wild host plants collected in Japan. Journal of General Plant Pathology 68, 52-6.
41. Zhan J, Pettway RE, McDonald BA, 2003. The global genetic structure of the wheat pathogen Mycosphaerella graminicola is characterized by high nuclear diversity, regular recombination, and gene flow. Fungal Genetics and Biology 38, 286-97.
42. Zhang JX, Fernando WGD, 2003. Virulence and genetic variability among isolates of Mycosphaerella pinodes. Plant Disease 87, 1376-83.