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Volumn 95, Issue 3, 2011, Pages 343-352

Exogenous controls increase negative call veracity in multiplexed, quantitative PCR assays for phakopsora pachyrhizi

Author keywords

[No Author keywords available]

Indexed keywords

FUNGI; GLYCINE MAX; PHAKOPSORA PACHYRHIZI;

EID: 79952382937     PISSN: 01912917     EISSN: None     Source Type: Journal    
DOI: 10.1094/PDIS-01-10-0023     Document Type: Article
Times cited : (27)

References (24)
  • 1
    • 0026454873 scopus 로고
    • Coamplified posi-tive control detects inhibition of polymerase chain reactions
    • Cone, R. W., Hobson, A. C., and Huang, M. L. W. 1992. Coamplified posi-tive control detects inhibition of polymerase chain reactions. J. Clin. Micro-biol. 30:3185-3189.
    • (1992) J. Clin. Micro-biol. , vol.30 , pp. 3185-3189
    • Cone, R.W.1    Hobson, A.C.2    Huang, M.L.W.3
  • 2
    • 0033153208 scopus 로고    scopus 로고
    • Development of internal controls for probe-based nucleic acid diagnostic assays
    • DOI 10.1006/abio.1999.4099
    • Courtney, B. C., Smith, M. M., and Henchal, E. A. 1999. Development of internal controls for probe-based nucleic acid diagnostic assays. Anal. Bio-chem. 270:249-256. (Pubitemid 29252536)
    • (1999) Analytical Biochemistry , vol.270 , Issue.2 , pp. 249-256
    • Courtney, B.C.1    Smith, M.M.2    Henchal, E.A.3
  • 4
    • 2542466265 scopus 로고    scopus 로고
    • Validation of a rice specific gene, sucrose phosphate synthase, used as the endogenous reference gene for qualitative and real-time quantitative PCR detection of transgenes
    • Ding, J., Jia, J. Yang, L., Wen, H., Zhang, C., Liu, W., and Zhang, D. 2004. Validation of a rice specific gene, sucrose phosphate synthase, used as the endogenous reference gene for qualitative and real-time quantitative PCR detection of transgenes. J. Agric. Food Chem. 52:3372-3337.
    • (2004) J. Agric. Food Chem. , vol.52 , pp. 3372-3337
    • Ding, J.1    Jia Yang J, L.2    Wen, H.3    Zhang, C.4    Liu, W.5    Zhang, D.6
  • 5
    • 0036164411 scopus 로고    scopus 로고
    • Polymerase chain reaction assays for the detection and discrimination of the soybean rust pathogens Phakopsora pachyrhizi and P. meibomiae
    • Frederick, R. D., Snyder, C. L., Peterson, G. L., and Bonde, M. R. 2002. Polymerase chain reaction assays for the detection and discrimination of the soybean rust pathogens Phakopsora pachyrhizi and P. meibomiae. Phytopa-thology 92:217-227. (Pubitemid 34128561)
    • (2002) Phytopathology , vol.92 , Issue.2 , pp. 217-227
    • Frederick, R.D.1    Snyder, C.L.2    Peterson, G.L.3    Bonde, M.R.4
  • 6
    • 9344235416 scopus 로고    scopus 로고
    • Detection and quantification of Fusarium solani f. sp. glycines in soybean roots with real-time quantitative polymerase chain reaction
    • Gao, X., Jackson, T. A., Lambert, K. N., Li, S., Hartman, G. L., and Nib-lack, T. L. 2004. Detection and quantification of Fusarium solani f. sp. gly-cines in soybean roots with real-time quantitative polymerase chain reac-tion. Plant Dis. 88:1372-1380. (Pubitemid 39554272)
    • (2004) Plant Disease , vol.88 , Issue.12 , pp. 1372-1380
    • Gao, X.1    Jackson, T.A.2    Lambert, K.N.3    Li, S.4    Hartman, G.L.5    Niblack, T.L.6
  • 7
    • 79952406746 scopus 로고    scopus 로고
    • Absolute copy numbers for DNA controls
    • Griffiths, K., Emslie, K., and Vesey, G. 2004. Absolute copy numbers for DNA controls. In: Bti, www.biotech-online.com.
    • (2004) Bti
    • Griffiths, K.1    Emslie, K.2    Vesey, G.3
  • 8
    • 11844289560 scopus 로고    scopus 로고
    • Development of a novel internal positive control for Taqman® based assays
    • DOI 10.1016/j.mcp.2004.07.006, PII S0890850804000738
    • Hartman, L. J., Coyne, S. R., and Norwood, D. A. 2005. Development of a novel internal positive control for TaqMan based assays. Mol. Cell. Probes 19:51-59. (Pubitemid 40093534)
    • (2005) Molecular and Cellular Probes , vol.19 , Issue.1 , pp. 51-59
    • Hartman, L.J.1    Coyne, S.R.2    Norwood, D.A.3
  • 9
    • 79952410024 scopus 로고    scopus 로고
    • Synthetic internal control sequences to increase negative call veracity in multiplexed, quantitative PCR assays for Phakopsora pachyrhizi
    • Haudenshield, J. S., and Hartman, G. L., 2008. Synthetic internal control sequences to increase negative call veracity in multiplexed, quantitative PCR assays for Phakopsora pachyrhizi. (Abstr.) Phytopathology 98:S66.
    • (2008) (Abstr.) Phytopathology , vol.98
    • Haudenshield, J.S.1    Hartman, G.L.2
  • 10
    • 0031154390 scopus 로고    scopus 로고
    • Polymerase chain reaction (PCR) detection and quantification using a short PCR product and a synthetic internal positive control
    • Honeycutt, R., Sobral, B. W., and McClelland, M. 1997. Polymerase chain reaction (PCR) detection and quantification using a short PCR product and a synthetic internal positive control. Anal. Biochem. 248:303-306.
    • (1997) Anal. Biochem. , vol.248 , pp. 303-306
    • Honeycutt, R.1    Sobral, B.W.2    McClelland, M.3
  • 11
    • 34247568433 scopus 로고    scopus 로고
    • Molecular analysis and quantitative detection of a transgenic rice line expressing a bifunctional fusion TPSP
    • DOI 10.1016/j.foodcont.2006.10.007, PII S0956713506002635
    • Jeong, S. C., Pack, I. S., Cho, E. Y., Youk, E. S., Park, S., Yoon, W. K., Kim, C. G., Choi, Y D., Kim, J. K., and Kim, H. M. 2007. Molecular analysis and quantitative detection of a transgenic rice line expressing a bifunctional fusion TPSP Food Control 18:1434-1442. (Pubitemid 46667695)
    • (2007) Food Control , vol.18 , Issue.11 , pp. 1434-1442
    • Jeong, S.-C.1    Pack, I.S.2    Cho, E.-Y.3    Youk, E.S.4    Park, S.5    Yoon, W.K.6    Kim, C.-G.7    Choi, Y.D.8    Kim, J.-K.9    Kim, H.M.10
  • 12
    • 15444364560 scopus 로고    scopus 로고
    • Development of procedures for direct extraction of Cryptosporidium DNA from water concentrates and for relief of PCR inhibitors
    • DOI 10.1128/AEM.71.3.1135-1141.2005
    • Jiang, J., Alderisio, K. A., Singh, A., and Xiao, L. 2005. Development of procedures for direct extraction of Cryptosporidium DNA from water con-centrates and for relief of PCR inhibitors. Appl. Environ. Microbiol. 71:1135-1141. (Pubitemid 40396647)
    • (2005) Applied and Environmental Microbiology , vol.71 , Issue.3 , pp. 1135-1141
    • Jiang, J.1    Alderisio, K.A.2    Singh, A.3    Xiao, L.4
  • 13
    • 0025079312 scopus 로고
    • Quantitation of HIV-1 proviral DNA relative to cellular DNA by the polymerase chain reaction
    • Kellog, D. E., Sninsky, J. J., and Kwok, S. 1990. Quantitation of HIV-1 proviral DNA relative to cellular DNA by the polymerase chain reaction. Anal. Biochem. 189:202-208. (Pubitemid 20312798)
    • (1990) Analytical Biochemistry , vol.189 , Issue.2 , pp. 202-208
    • Kellogg, D.E.1    Sninsky, J.J.2    Kwok, S.3
  • 14
    • 33745745782 scopus 로고    scopus 로고
    • Evaluation of real-time PCR amplification efficiencies to detect PCR inhibitors
    • DOI 10.1111/j.1556-4029.2006.00182.x
    • Kontanis, E. J., and Reed, F. A. 2006. Evaluation of real-time PCR amplifi-cation efficiencies to detect PCR inhibitors. J. Forensic Sci. 51:795-804. (Pubitemid 44015185)
    • (2006) Journal of Forensic Sciences , vol.51 , Issue.4 , pp. 795-804
    • Kontanis, E.J.1    Reed, F.A.2
  • 15
    • 0035710746 scopus 로고    scopus 로고
    • -ΔΔCT method
    • DOI 10.1006/meth.2001.1262
    • -ΔΔCt method. Methods 25:402-408. (Pubitemid 34164012)
    • (2001) Methods , vol.25 , Issue.4 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 16
    • 33244458433 scopus 로고    scopus 로고
    • Isolation of fungal DNA from plant tissues and removal of DNA amplification inhibitors
    • DOI 10.1111/j.1471-8286.2005.01044.x
    • Malvick, D. K., and Grunden, E. 2005. Isolation of fungal DNA from plant tissues and removal of DNA amplification inhibitors. Mol. Ecol. Notes 5:958-960. (Pubitemid 43278021)
    • (2005) Molecular Ecology Notes , vol.5 , Issue.4 , pp. 958-960
    • Malvick, D.K.1    Grunden, E.2
  • 17
    • 34249083983 scopus 로고    scopus 로고
    • Detection and quantification of Phialophora gregata in soybean and soil samples with a quantitative, real-time PCR assay
    • DOI 10.1094/PDIS-91-6-0736
    • Malvick, D. K., and Impullitti, A. E. 2007. Detection and quantification of Phialophora gregata in soybean and soil samples with a quantitative, real-time PCR assay. Plant Dis. 91:736-742. (Pubitemid 46789737)
    • (2007) Plant Disease , vol.91 , Issue.6 , pp. 736-742
    • Malvick, D.K.1    Impullitti, A.E.2
  • 18
    • 34248210677 scopus 로고    scopus 로고
    • Inhibition of quantitative PCR analysis of fungal conidia associated with indoor air particulate matter
    • DOI 10.1007/s10453-006-9047-6
    • McDevitt, J. J., Lees, P. S. J., Merz, W. G., and Schwab, K. J. 2007. Inhibi-tion of quantitative PCR analysis of fungal conidia associated with indoor air particulate matter. Aerobiologia 23:35-45. (Pubitemid 46723604)
    • (2007) Aerobiologia , vol.23 , Issue.1 , pp. 35-45
    • McDevitt, J.J.1    Lees, P.S.J.2    Merz, W.G.3    Schwab, K.J.4
  • 19
    • 33645293441 scopus 로고    scopus 로고
    • SPUD: A quantitative PCR assay for the detection of inhibitors in nucleic acid preparations
    • Nolan, T., Hands, R. E., Ogunkolade, W., and Bustin, S. A. 2006. SPUD: a quantitative PCR assay for the detection of inhibitors in nucleic acid preparations. Anal. Biochem. 351:308-310.
    • (2006) Anal. Biochem. , vol.351 , pp. 308-310
    • Nolan, T.1    Hands, R.E.2    Ogunkolade, W.3    Bustin, S.A.4
  • 21
    • 0031974426 scopus 로고    scopus 로고
    • An internal control for routine diagnostic PCR: Design, properties, and effect on clinical performance
    • Rosenstraus, M., Wang, Z., Chang, S. Y., DeBonville, D., and Spadoro, J. P. 1998. An internal control for routine diagnostic PCR: design, properties, and effect on clinical performance. J. Clin. Microbiol. 36:191-197. (Pubitemid 28047457)
    • (1998) Journal of Clinical Microbiology , vol.36 , Issue.1 , pp. 191-197
    • Rosenstraus, M.1    Wang, Z.2    Chang, S.-Y.3    Debonville, D.4    Spadoro, J.P.5
  • 23
    • 0034758994 scopus 로고    scopus 로고
    • Accuracy in amplification
    • Stenman, J., and Orpana, A. 2001. Accuracy in amplification. Nat. Biotech-nol. 19:1011-1012.
    • (2001) Nat. Biotechnol. , vol.19 , pp. 1011-1012
    • Stenman, J.1    Orpana, A.2
  • 24
    • 0026631316 scopus 로고
    • Utility of an internal control for the polymerase chain reaction. Application to detection of My-coplasma pneumoniae in clinical specimens
    • Ursi, J. P., Ursi, D., Ieven, M., and Pattyn, S. R. 1992. Utility of an internal control for the polymerase chain reaction. Application to detection of My-coplasma pneumoniae in clinical specimens. Acta Pathol. Microbiol. Immu-nol. Scand. 100:635-639.
    • (1992) Acta Pathol. Microbiol. Immunol. Scand. , vol.100 , pp. 635-639
    • Ursi, J.P.1    Ursi, D.2    Ieven, M.3    Pattyn, SR.4


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