Genetic diversity in Australian populations of Puccinia graminis f. sp. avenae

Phytopathology

Volumn 96, Issue 1, 2006, Pages 96-104

  Keiper, F J ^a,b   Haque, M S ^c   Hayden, M J ^b,d   Park, R F ^c  

^a SOUTH AUSTRALIAN RESEARCH AND DEVELOPMENT INSTITUTE   (Australia)

^b University of Melbourne   (Australia)

^c UNIVERSITY OF SYDNEY   (Australia)

^d UNIVERSITY OF ADELAIDE   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

PUCCINIA GRAMINIS F. SP. AVENAE; PUCCINIA GRAMINIS F. SP. TRITICI; TRITICUM AESTIVUM;

EID: 29744435529     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO-96-0096     Document Type: Article

References (37)

1. Adhikari, K. 1996. Genetic studies of stem rust resistance in oat and triticale. Ph.D. thesis. University of Sydney, Australia.
2. Arenal, F., Platas, G., Martin, J., Salazar, O., and Pelaez, F. 1999. Evaluation of different PCR-based DNA fingerprinting techniques for assessing the genetic variability of isolates of the fungus Epicoccum nigrum. J. Appl. Microbiol. 87:898-906.
3. Brake, V. M., Irwin, J. A. G., and Park, R. F. 2001. Genetic variability in Australian isolates of Puccinia coronata f. sp. avenae assessed with molecular markers and pathogenicity markers. Aust. Plant Pathol. 30:259-266.
4. Brown, J. K. M., and Hovmøller, M. S. 2002. Aerial dispersal of pathogens on the global and continental scales and its impact on plant disease. Science 297:537-541.
5. Chen, X., Line, R. F., and Leung, H. 1993. Relationship between virulence variation and DNA polymorphism in Puccinia striiformis. Phytopathology 83:1498-1497.
6. Dickinson, M. J., Wellings, C. R., and Pryor, A. 1990. Variation in the double-stranded RNA phenotype between and within different rust species. Can. J. Bot. 68:599-604.
7. Di Gaspero, G., Peterlunger, E., Testolin, R., Edwards, K. J., and Cipriani, G. 2000. Conservation of microsatellite loci within the genus Vitis. Theor. Appl. Genet. 101:301-308.
8. Duan, X., Enjalbert, J., Vautrin, D., Solignac, M., and Giraud, T. 2003. Isolation of twelve microsatellite loci, using an enrichment protocol, in the phytopathogenic fungus Puccinia triticina. Mol. Ecol. Notes 3:65-67.
9. Enjalbert, J., Duan, X., Giraud, T., Vautrin, D., de Vallavielle-Pope, C., and Solignac, M. 2002. Isolation of twelve microsatellite loci, using an enrichment protocol, in the phytopathogenic fungus Puccinia striiformis f. sp. tritici. Mol. Ecol. Notes 2:563-565.
10. Enkerli, J., Widmer, F., Gessler, C., and Keller, S. 2001. Strain-specific microsatellite markers in the entomopathogenic fungus Beauveria brongniartii. Mycol. Res. 105:1079-1087.
11. Excoffier, L. 1995. AMOVA 1.55 (Analysis of Molecular Variance). Genetics and Biometry Laboratory. University of Geneva, Switzerland.
12. Excoffier, L., Smouse, P., and Quattro, J. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction sites. Genetics 131:479-491.
13. Felsenstein, J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791.
14. Hartl, D. L., and Clarke, A. G. 1997. Principles of Population Genetics. 3rd ed. Sinauer Associates, Massachusetts.
15. Hayden, M. J., and Sharp, P. J. 2001. Sequence-tagged microsatellite profiling (STMP): A rapid technique for developing SSR markers. Nucleic Acids Res. 29:e43.
16. Hayden, M. J., and Sharp, P. J. 2001. Targeted development of informative microsatellite (SSR) markers. Nucleic Acids Res. 29:e44.
17. Jaccard, P. 1908. Nouvelles recherches sur la distribution florale. Bull. Soc. Vaudoise Sci. Nat. 44:223-270.
18. Keiper, F. J., Hayden, M. J., Park, R. F., and Wellings, C. R. 2003. Molecular genetic variability of Australian isolates of five cereal rust pathogens. Mycol. Res. 107:545-556.
19. Koch, E., Song, K., Osborn, T. C., and Williams, P. H. 1991. Relationship between pathogenicity and phylogeny based on restriction fragment length polymorphism in Leptosphaeria maculans. Mol. Plant-Microbe Interact. 4:341-349.
20. Majer, D., Mithen, R., Lewis, B. G., Vos, P., and Oliver, R. P. 1996. The use of AFLP fingerprinting for the detection of genetic variation in fungi. Mycol. Res. 100:1107-1111.
21. McCallum, B. D., Roelfs, A. P., Szabo, L. J., and Groth, J. V. 1999. Comparison of Puccinia graminis f. sp. tritici from South America and Europe. Plant Pathol. 100:547-581.
22. McIntosh, R. A., Wellings, C. R., and Park, R. F. 1995. Wheat Rusts: An Atlas of Resistance Genes. CSIRO Publications, Melbourne, Australia.
23. Meldrum, S., and Oates, J. D. 1997. Cereal Rust Survey 1997-1998, Annual Report. The University of Sydney, Plant Breeding Institute Cobbitty.
24. Miller, M. P. 1997. Amova-Prep. Department of Biological Sciences. Northern Arizona University, Arizona.
25. Nei, M. 1987. Molecular Evolutionary Genetics. Columbia University Press, New York.
26. Newton, A. C., Caten, C. E., and Johnson, R. 1985. Variation for isozymes and double-stranded RNA among isolates of Puccinia striiformis and two other cereal rusts. Plant Pathol. 34:235-247.
27. Park, R. F., Burdon, J. J., and Jahoor, A. 1999. Evidence for somatic hybridization in nature in Puccinia recondita f. sp. tritici, the leaf rust pathogen of wheat. Mycol. Res. 103:715-723.
28. Park, R. F., Burdon, J. J., and McIntosh, R. A. 1995. Studies on the origin, spread, and evolution of an important group of Puccinia recondita f. sp. tritici pathotypes in Australasia. Eur. J. Plant Pathol. 101:613-622.
29. Sneath, P. H. A., and Sokal, R. R. 1973. Numerical Taxonomy. W.H. Freeman & Co., San Francisco.
30. Steele, K. A., Humphreys, E., Wellings, C. R., and Dickinson, M. J. 2001. Support for a stepwise mutation model for pathogen evolution in Australasian Puccinia striiformis f. sp. tritici by use of molecular markers. Plant Pathol. 50:174-180.
31. Stewart, D. M., and Roberts, B. J. 1970. Identifying races of Puccinia graminis f. sp. avenae: A modified international system. U.S. Dep. Agric. Tech. Bull. 1416.
32. Velculescu, V. E., Zhang, L., Vogelstein, B., and Kinzler, K. W. 1995. Serial analysis of gene expression. Science 270:484-487.
33. Weber, J. L., and May, P. E. 1989. Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am. J. Hum. Genet. 44:388-396.
34. Wellings, C. R., Burdon, J. J., McIntosh, R. A., Wallwork, H., Raman, H., and Murray, G. M. 2000. A new variant of Puccinia striiformis causing stripe rust on barley and wild Hordeum species in Australia. Plant Pathol. 49:803.
35. Wellings, C. R., and McIntosh, R. A. 1990. Puccinia striiformis f. sp. tritici in Australasia: Pathogenic changes during the first 10 years. Plant Pathol. 39:316-325.
36. Yap, V., and Nelson, R. J. 1996. WinBoot: A Program for Performing Bootstrap Analysis of Binary Data to Determine the Confidence Limits of UPGMA-Based Dendrograms, IRRI Disc. Pap. Ser. No. 14. International Rice Institute, Manila, The Philippines.
37. Zambino, P. J., Kubelik, A. R., and Szabo, L. J. 2000. Gene action and linkage of avirulence genes to DNA markers in the rust fungus Puccinia graminis. Phytopathology 90:819-826.