Visual detection of H3 subtype avian influenza viruses by reverse transcription loop-mediated isothermal amplification assay

Virology Journal

Volumn 8, Issue , 2011, Pages

  Peng, Yi ^a   Xie, Zhixun ^a   Liu, Jiabo ^a   Pang, Yaoshan ^a   Deng, Xianwen ^a   Xie, Zhiqin ^a   Xie, Liji ^a   Fan, Qing ^a   Feng, Jiaxun ^c   Khan, Mazhar I ^b  

^a GUANGXI VETERINARY RESEARCH INSTITUTE   (China)

^b UNIVERSITY OF CONNECTICUT   (United States)

^c GUANGXI UNIVERSITY   (China)

Author keywords

avian influenza; H3 subtype; Loop mediated isothermal amplification

Indexed keywords

HEMAGGLUTININ; VIRUS RNA; INFLUENZA VIRUS HEMAGGLUTININ; PRIMER DNA;

ARTICLE; AVIAN INFLUENZA VIRUS; AVIAN INFLUENZA VIRUS H3; BIRD; NONHUMAN; REVERSE TRANSCRIPTION LOOP MEDIATED ISOTHERMAL AMPLIFICATION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; VIRUS GENE; VIRUS ISOLATION; VIRUS STRAIN; VISION; ANIMAL; AVIAN INFLUENZA; COMPARATIVE STUDY; CROSS REACTION; EVALUATION; GENETICS; HUMAN; INFLUENZA; INFLUENZA VIRUS A; ISOLATION AND PURIFICATION; METHODOLOGY; NUCLEIC ACID AMPLIFICATION; REVERSE TRANSCRIPTION; VIROLOGY;

AVES; AVIAN INFLUENZA VIRUS; ORTHOMYXOVIRIDAE;

ANIMALS; BIRDS; CROSS REACTIONS; DNA PRIMERS; HEMAGGLUTININ GLYCOPROTEINS, INFLUENZA VIRUS; HUMANS; INFLUENZA A VIRUS; INFLUENZA IN BIRDS; INFLUENZA, HUMAN; NUCLEIC ACID AMPLIFICATION TECHNIQUES; REVERSE TRANSCRIPTION; SENSITIVITY AND SPECIFICITY; VIROLOGY;

EID: 79959854941     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/1743-422X-8-337     Document Type: Article

References (25)

1. Evolution and ecology of influenza A viruses. Webster RG Bean WJ Gorman OT Chambers TM, Kawaoka Y,, Microbiol Rev 1992 56 1 152 179 1579108
2. Pandemic threat posed by avian influenza A viruses. Horimoto T Kawaoka Y, Clin Microbiol Rev 2001 14 1 129 149 10.1128/CMR.14.1.129-149.2001 11148006 (Pubitemid 32096210)
3. Characterization of a novel influenza A virus hemagglutinin subtype (H16) obtained from black-headed gulls. Fouchier RAM Munster V Wallensten A Bestebroer TM, Herfst S Smith D, Rimmelzwaan GF Olsen B, Osterhaus ADME,, J Virol 2005 79 5 2814 2822 10.1128/JVI.79.5.2814-2822.2005 15709000 (Pubitemid 40270559)
4. A review of avian influenza in different bird species. Alexander DJ, Vet Microbiol 2000 74 1-2 3 13 10.1016/S0378-1135(00)00160-7 10799774 (Pubitemid 30224640)
5. OIE laboratory standards for avian influenza. Edwards S, Dev Bio (Basel) 2006 124 159 162 (Pubitemid 43258913)
6. On the origin of the human influenza virus subtype H2N2 and H3N2. Scholtissek C Rohde W, Von-Hoyningen V Rott R, Virology 1978 87 1 13 20 10.1016/0042-6822(78)90153-8 664248 (Pubitemid 8359271)
7. Identification of human H1N2 and human-swine reassortant H1N2 and H1N1 influenza A viruses among pigs in Ontario, Canada (2003 to 2005). Karasin AI Carman S Olsen CW,, J Clin Microbiol 2006 44 3 1123 1126 10.1128/JCM.44.3.1123- 1126.2006 16517910
8. Etiological examination on the low pathogenicity avian influenza viruses with different HA subtypes from poultry isolated in eastern China from 2006 to 2008. Peng Y Zhang W, Xue F Wang WB, Li YF Meng CC, Zhang WJ Liu XF, Chin J Zoonoses 2009 25 2 119 121
9. Ecology of H3 avian influenza viruses in Korea and assessment of their pathogenic potentials. Song MS Oh TK, Moon HJ Yoo DW, Lee EH Lee JS, Kim CJ Yoo GJ, Kim H Choi YK, J Gen Virol 2008 89 949 957 10.1099/vir.0.83462-0 18343836
10. H3N2 influenza viruses from domestic chickens in Italy:an increasing role for chickens in the ecology of influenza? Campitelli L Fabiani C Puzelli S Fioretti A, Foni E De Marco MA, Krauss S Webster RG, Donatelli I,, J Gen Virol 2002 83 413 420 11807234 (Pubitemid 34134249)
11. Loop-mediated isothermal amplification of DNA. Notomi T Okayama H Masubuchi H Yonekawa T, Watanabe K Amino N, Hase T,, Nucleic Acids Res 2000 28 12 63 10.1093/nar/28.12.e63 10871386
12. Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation. Mori Y Nagamine K, Tomita N Notomi T, Biochem Biophys Res Commun 2001 289 1 150 154 10.1006/bbrc.2001.5921 11708792 (Pubitemid 33108807)
13. Loop-mediated isothermal amplification (LAMP) of gene sequences and simple visual detection of products. Tomita N Mori Y, Kanda H Notomi T, Nature protocol 2008 3 5 877 882 10.1038/nprot.2008.57 (Pubitemid 351639031)
14. Reverse transcription loop-mediated isothermal amplification for the detection of Porcine reproductive and respiratory syndrome virus. Rovira A Abrahante J, Murtaugh M Mun oz-Zanzi C, J Vet Diagn Invest 2009 21 3 350 354 10.1177/104063870902100308 19407088
15. Loop-Mediated Isothermal Amplification for Rapid Detection of Newcastle Disease Virus. Pham HM Nakajima C, Ohashi K Onuma M, J Clin Microbiol 2005 43 4 1646 1650 10.1128/JCM.43.4.1646-1650.2005 15814979
16. Development of reverse-transcription loop-mediated isothermal amplification for the detection of infectious bursal disease virus. Xu JT Zhang ZM, Yin YB Cui SJ, Xu SZ Guo YY, Li JD Wang JL, Liu XC Han LM, J Virol Methods 2009 162 267 271 10.1016/j.jviromet.2009.07.010 19643144
17. Detection of human influenza A viruses by loop-mediated isothermal amplification. Poon LLM Leung CSW Chan KH Lee JHC, Yuen KY Guan Y, Peiris JSM,, J Clin Microbiol 2005 43 1 427 430 10.1128/JCM.43.1.427-430.2005 15635005 (Pubitemid 40096334)
18. Rapid detection and typing of influenza A and B by loop-mediated isothermal amplification: comparison with immunochromatography and virus isolation. Ito M Watanabe M, Nakagawa N Okuno Y, J Virol Methods 2006 135 272 275 10.1016/j.jviromet.2006.03.003 16616961 (Pubitemid 43902977)
19. Development of H5-RT-LAMP (loop-mediated isothermal amplification) system for rapid diagnosis of H5 avian influenza virus infection. Imai M Ninomiya A Minekawa H Notomi T, Ishizaki T Tashiro M, Odagiri T,, Vaccine 2006 24 6679 6682 10.1016/j.vaccine.2006.05.046 16797110 (Pubitemid 46107167)
20. Rapid diagnosis of H5N1 avian influenza virus infection by newly developed influenza H5 hemagglutinin gene-specific loop-mediated isothermal amplification method. Imai M Ninomiya A Minekawa H Notomi T, Ishizaki T Tu PV, Tien NTK Tashiro M, Odagiri T,, J Virol Methods 2007 141 173 180 10.1016/j.jviromet.2006.12.004 17218021 (Pubitemid 46466971)
21. Visual detection of pandemic influenza A H1N1 Virus 2009 by reverse-transcription loop-mediated isothermal amplification with hydroxynaphthol blue dye. Ma XJ Shu YL, Nie K Qin M, Wang DY Gao RB, Wang M Wen LY, Han F Zhou SM,, et al. J Virol Methods 2010 167 214 217 10.1016/j.jviromet. 2010.03.027 20381535
22. Development of a reverse transcription-loop-mediated isothermal amplification assay for detection of pandemic (H1N1) 2009 virus as a novel molecular method for diagnosis of pandemic influenza in resource-limited settings. Kubo T Agoh M, Q-Mai Le Fukushima K, Nishimura H Yamaguchi A, Hirano M Yoshikawa A, Hasebe Fi Kohno S,, et al. J Clin Microbiol 2010 48 3 728 735 10.1128/JCM.01481-09 20071551
23. A laboratory manual for the isolation and identification of avian pathogens. Swayne ED Glisson RJ Jackwood MW Pearson EJ, Reed MW,, American Association of Avian Pathologist University of Pennsylvania 1998
24. Development of an internal positive control for rapid diagnosis of avian influenza virus infections by real-time reverse transcription-PCR with lyophilized reagents. Das A Spackman E Senne D Pedersen J, Suarez DL,, J Clin Microbiol 2006 44 9 3065 3073 10.1128/JCM.00639-06 16954228 (Pubitemid 44413732)
25. Subtyping of avian influenza viruses H1 to H15 on the basis of hemagglutinin genes by PCR assay and molecular determination of pathogenic potential. Tsukamoto K Ashizawa H, Nakanishi K Kaji N, Suzuki K Okamatsu M, Yamaguchi S Mase M, J Clin Microbiol 2008 46 9 3048 3055 10.1128/JCM.02386-07 18596143