Expression profiling of GIST: CD133 is associated with KIT exon 11 mutations, gastric location and poor prognosis

International Journal of Cancer

Volumn 129, Issue 5, 2011, Pages 1149-1161

  Arne, Gabriella ^a   Kristiansson, Erik ^a,b,c   Nerman, Olle ^b,c   Kindblom, Lars Gunnar ^d   Ahlman, Håkan ^a   Nilsson, Bengt ^a   Nilsson, Ola ^a,e  

^a UNIVERSITY OF GOTHENBURG   (Sweden)

^b CHALMERS UNIVERSITY OF TECHNOLOGY   (Sweden)

^c UNIVERSITY OF GOTHENBURG   (Sweden)

^d ROYAL ORTHOPAEDIC HOSPITAL   (United Kingdom)

^e SAHLGRENSKA UNIVERSITY HOSPITAL   (Sweden)

Author keywords

biomarker; CD133 (prominin 1); expression profiling; GIST; KIT

Indexed keywords

CD133 PROTEIN; IMATINIB; ONCOPROTEIN; PLATELET DERIVED GROWTH FACTOR ALPHA RECEPTOR; UNCLASSIFIED DRUG;

ADULT; AGED; ARTICLE; CA2 GENE; CALD1 GENE; CD133 GENE; CD34 GENE; CLINICAL ARTICLE; CONTROLLED STUDY; CXCL12 GENE; DLK1 GENE; DOG1 GENE; EXON; FEMALE; GASTROINTESTINAL TUMOR; GENE DELETION; GENE EXPRESSION PROFILING; GENE IDENTIFICATION; GENE MUTATION; GENETIC ASSOCIATION; HMCN1 GENE; HUMAN; HUMAN TISSUE; IGFBP5 GENE; IMMUNOHISTOCHEMISTRY; MALE; MISSENSE MUTATION; MMP2 GENE; NBL1 GENE; ONCOGENE; ONCOGENE C KIT; PRIORITY JOURNAL; PROTEIN EXPRESSION; REAL TIME POLYMERASE CHAIN REACTION; SERPINF1 GENE; TGFBI GENE; TISSUE MICROARRAY; TUMOR VOLUME; UPREGULATION;

ADULT; AGED; AGED, 80 AND OVER; ANTIGENS, CD; CHILD; DNA, NEOPLASM; EXONS; FEMALE; GASTROINTESTINAL STROMAL TUMORS; GENE EXPRESSION PROFILING; GLYCOPROTEINS; HUMANS; IMMUNOENZYME TECHNIQUES; MALE; MIDDLE AGED; MUTATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PEPTIDES; POLYMERASE CHAIN REACTION; PROGNOSIS; PROTO-ONCOGENE PROTEINS C-KIT; RECEPTOR, PLATELET-DERIVED GROWTH FACTOR ALPHA; RNA, MESSENGER; STOMACH NEOPLASMS; SURVIVAL RATE; SWEDEN; TUMOR MARKERS, BIOLOGICAL;

EID: 79959749860     PISSN: 00207136     EISSN: 10970215     Source Type: Journal    
DOI: 10.1002/ijc.25755     Document Type: Article

References (50)

1. Kindblom LG, Remotti HE, Aldenborg F, Meis-Kindblom JM,. Gastrointestinal pacemaker cell tumor (GIPACT): gastrointestinal stromal tumors show phenotypic characteristics of the interstitial cells of Cajal. Am J Pathol 1998; 152: 1259-69. (Pubitemid 28221878)
2. Hirota S, Isozaki K, Moriyama Y, Hashimoto K, Nishida T, Ishiguro S, Kawano K, Hanada M, Kurata A, Takeda M, Muhammad Tunio G, Matsuzawa Y, et al,. Gain-of-function mutations of c-kit in human gastrointestinal stromal tumors. Science 1998; 279: 577-80. (Pubitemid 28067289)
3. Heinrich MC, Corless CL, Duensing A, McGreevey L, Chen CJ, Joseph N, Singer S, Griffith DJ, Haley A, Town A, Demetri GD, Fletcher CD, et al,. PDGFRA activating mutations in gastrointestinal stromal tumors. Science 2003; 299: 708-10. (Pubitemid 36159485)
4. Corless CL, Heinrich MC,. Molecular pathobiology of gastrointestinal stromal sarcomas. Annu Rev Pathol 2008; 3: 557-86. (Pubitemid 351488293)
5. Van Glabbeke MM, Owzar K, Rankin CJ, Simes J, Crowley J,. GIST Meta-analysis Group (MetaGIST). Comparison of two doses of imatinib for the treatment of gastrointestinal stromal tumors (GIST): a meta-analysis based on 1640 patients. 2007 ASCO Annual Meeting Proceedings Part I 2007; 25 (18S); June 20 Supplement.
6. Gold JS, van der Zwan SM, Gonen M, Maki RG, Singer S, Brennan MF, Antonescu CR, De Matteo RP,. Outcome of metastatic GIST in the era before tyrosine kinase inhibitors. Ann Surg Oncol 2007; 14: 134-42. (Pubitemid 44954280)
7. Blanke CD, Rankin C, Demetri GD, Ryan CW, von Mehren M, Benjamin RS, Raymond AK, Bramwell VH, Baker LH, Maki RG, Tanaka M, Hecht JR, et al,. Phase III randomized, intergroup trial assessing imatinib mesylate at two dose levels in patients with unresectable or metastatic gastrointestinal stromal tumors expressing the kit receptor tyrosine kinase: S0033. J Clin Oncol 2008; 26: 626-32. (Pubitemid 351264358)
8. Duensing S, Duensing A,. Targeted therapies of gastrointestinal stromal tumors (GIST)-the next frontiers. Biochem Pharmacol 2010; 80: 575-83.
9. Heinrich MC, Corless CL, Blanke CD, Demetri GD, Joensuu H, Roberts PJ, Eisenberg BL, von Mehren M, Fletcher CD, Sandau K, McDougall K, Ou WB, et al,. Molecular correlates of imatinib resistance in gastrointestinal stromal tumors. J Clin Oncol 2006; 24: 4764-74. (Pubitemid 46630941)
10. Gunawan B, von Heydebreck A, Sander B, Schulten HJ, Haller F, Langer C, Armbrust T, Bollmann M, Gasparov S, Kovac D, Fuzesi L,. An oncogenetic tree model in gastrointestinal stromal tumours (GISTs) identifies different pathways of cytogenetic evolution with prognostic implications. J Pathol 2007; 211: 463-70. (Pubitemid 46332558)
11. Wozniak A, Sciot R, Guillou L, Pauwels P, Wasag B, Stul M, Vermeesch JR, Vandenberghe P, Limon J, Debiec-Rychter M,. Array CGH analysis in primary gastrointestinal stromal tumors: cytogenetic profile correlates with anatomic site and tumor aggressiveness, irrespective of mutational status. Genes Chromosomes Cancer 2007; 46: 261-76. (Pubitemid 46155321)
12. Subramanian S, West RB, Corless CL, Ou W, Rubin BP, Chu KM, Leung SY, Yuen ST, Zhu S, Hernandez-Boussard T, Montgomery K, Nielsen TO, et al,. Gastrointestinal stromal tumors (GISTs) with KIT and PDGFRA mutations have distinct gene expression profiles. Oncogene 2004; 23: 7780-90. (Pubitemid 39457028)
13. Kang HJ, Nam SW, Kim H, Rhee H, Kim NG, Hyung WJ, Noh SH, Kim JH, Yun CO, Liu ET,. Correlation of KIT and platelet-derived growth factor receptor alpha mutations with gene activation and expression profiles in gastrointestinal stromal tumors. Oncogene 2005; 24: 1066-74. (Pubitemid 40313883)
14. Antonescu CR, Viale A, Sarran L, Tschernyavsky SJ, Gonen M, Segal NH, Maki RG, Socci ND, DeMatteo RP, Besmer P,. Gene expression in gastrointestinal stromal tumors is distinguished by KIT genotype and anatomic site. Clin Cancer Res 2004; 10: 3282-90. (Pubitemid 38685432)
15. Yamaguchi U, Nakayama R, Honda K, Ichikawa H, Hasegawa T, Shitashige M, Ono M, Shoji A, Sakuma T, Kuwabara H, Shimada Y, Sasako M, et al,. Distinct gene expression-defined classes of gastrointestinal stromal tumor. J Clin Oncol 2008; 26: 4100-8.
16. Singer S, Rubin BP, Lux ML, Chen CJ, Demetri GD, Fletcher CD, Fletcher JA,. Prognostic value of KIT mutation type, mitotic activity, and histologic subtype in gastrointestinal stromal tumors. J Clin Oncol 2002; 20: 3898-905.
17. Martin J, Poveda A, Llombart-Bosch A, Ramos R, Lopez-Guerrero JA, Garcia del Muro J, Maurel J, Calabuig S, Gutierrez A, Gonzalez de Sande JL, Martinez J, De Juan A, et al,. Deletions affecting codons 557-558 of the c-KIT gene indicate a poor prognosis in patients with completely resected gastrointestinal stromal tumors: a study by the Spanish Group for Sarcoma Research (GEIS). J Clin Oncol 2005; 23: 6190-8.
18. Andersson J, Bümming P, Meis-Kindblom JM, Sihto H, Nupponen N, Joensuu H, Oden A, Gustavsson B, Kindblom LG, Nilsson B,. Gastrointestinal stromal tumors with KIT exon 11 deletions are associated with poor prognosis. Gastroenterology 2006; 130: 1573-81. (Pubitemid 43668833)
19. Nilsson B, Bümming P, Meis-Kindblom JM, Oden A, Dortok A, Gustavsson B, Sablinska K, Kindblom LG,. Gastrointestinal stromal tumors: the incidence, prevalence, clinical course, and prognostication in the preimatinib mesylate era-a population-based study in western Sweden. Cancer 2005; 103: 821-9. (Pubitemid 40216412)
20. Fletcher CD, Berman JJ, Corless C, Gorstein F, Lasota J, Longley BJ, Miettinen M, O'Leary TJ, Remotti H, Rubin BP, Shmookler B, Sobin LH, et al,. Diagnosis of gastrointestinal stromal tumors: a consensus approach. Hum Pathol 2002; 33: 459-65. (Pubitemid 34747864)
21. Smyth GK,. Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 2004; 3:Article3.
22. Yang YH, Dudoit S, Luu P, Lin DM, Peng V, Ngai J, Speed TP,. Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res 2002; 30: e15.
23. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ,. Basic local alignment search tool. J Mol Biol 1990; 215: 403-10.
24. Mizrak D, Brittan M, Alison MR,. CD133: molecule of the moment. J Pathol 2008; 214: 3-9.
25. Andersen PK, Borgan Ö, Gill RD, Keiding N,. Statistical models based on counting processesed: springer series in statistics, New York: Springer-Verlag, 1993.
26. Leung KM, Elashoff RM, Afifi AA,. Censoring issues in survival analysis. Annu Rev Public Health 1997; 18: 83-104. (Pubitemid 27194065)
27. Grambsch P, Therneau T,. Proportional hazard tests and diagnostics based on weighted residuals. Biometrika 1994; 81: 515-26.
28. Suehara Y, Kondo T, Seki K, Shibata T, Fujii K, Gotoh M, Hasegawa T, Shimada Y, Sasako M, Shimoda T, Kurosawa H, Beppu Y, et al,. Pfetin as a prognostic biomarker of gastrointestinal stromal tumors revealed by proteomics. Clin Cancer Res 2008; 14: 1707-17. (Pubitemid 351469455)
29. Salto-Tellez M, Nga ME, Han HC, Wong AS, Lee CK, Anuar D, Ng SS, Ho M, Wee A, Chan YH, Soong R,. Tissue microarrays characterise the clinical significance of a VEGF-A protein expression signature in gastrointestinal stromal tumours. Br J Cancer 2007; 96: 776-82. (Pubitemid 46376613)
30. Di Vizio D, Demichelis F, Simonetti S, Pettinato G, Terracciano L, Tornillo L, Freeman MR, Insabato L,. Skp2 expression is associated with high risk and elevated Ki67 expression in gastrointestinal stromal tumours. BMC Cancer 2008; 8: 134.
31. Sabah M, Cummins R, Leader M, Kay E,. Loss of heterozygosity of chromosome 9p and loss of p16INK4A expression are associated with malignant gastrointestinal stromal tumors. Mod Pathol 2004; 17: 1364-71. (Pubitemid 39472991)
32. Lasota J, Corless CL, Heinrich MC, Debiec-Rychter M, Sciot R, Wardelmann E, Merkelbach-Bruse S, Schildhaus HU, Steigen SE, Stachura J, Wozniak A, Antonescu C, et al,. Clinicopathologic profile of gastrointestinal stromal tumors (GISTs) with primary KIT exon 13 or exon 17 mutations: a multicenter study on 54 cases. Mod Pathol 2008; 21: 476-84. (Pubitemid 351441037)
33. Ou WB, Zhu MJ, Demetri GD, Fletcher CD, Fletcher JA,. Protein kinase C-theta regulates KIT expression and proliferation in gastrointestinal stromal tumors. Oncogene 2008; 27: 5624-34.
34. Robinson TL, Sircar K, Hewlett BR, Chorneyko K, Riddell RH, Huizinga JD,. Gastrointestinal stromal tumors may originate from a subset of CD34-positive interstitial cells of Cajal. Am J Pathol 2000; 156: 1157-63. (Pubitemid 30659992)
35. Yin AH, Miraglia S, Zanjani ED, Almeida-Porada G, Ogawa M, Leary AG, Olweus J, Kearney J, Buck DW,. AC133, a novel marker for human hematopoietic stem and progenitor cells. Blood 1997; 90: 5002-12. (Pubitemid 28007217)
36. Zhu L, Gibson P, Currle DS, Tong Y, Richardson RJ, Bayazitov IT, Poppleton H, Zakharenko S, Ellison DW, Gilbertson RJ,. Prominin 1 marks intestinal stem cells that are susceptible to neoplastic transformation. Nature 2008; 29: 603-7.
37. Yi JM, Tsai HC, Glockner SC, Lin S, Ohm JE, Easwaran H, James CD, Costello JF, Riggins G, Eberhart CG, Laterra J, Vescovi AL, et al,. Abnormal DNA methylation of CD133 in colorectal and glioblastoma tumors. Cancer Res 2008; 68: 8094-103.
38. You H, Ding W, Rountree CB,. Epigenetic regulation of cancer stem cell marker CD133 by transforming growth factor-beta. Hepatology 2010; 51: 1635-44.
39. Matsumoto K, Arao T, Tanaka K, Kaneda H, Kudo K, Fujita Y, Tamura D, Aomatsu K, Tamura T, Yamada Y, Saijo N, Nishio K,. mTOR signal and hypoxia-inducible factor-1 alpha regulate CD133 expression in cancer cells. Cancer Res 2009; 69: 7160-4.
40. Zeppernick F, Ahmadi R, Campos B, Dictus C, Helmke BM, Becker N, Lichter P, Unterberg A, Radlwimmer B, Herold-Mende CC,. Stem cell marker CD133 affects clinical outcome in glioma patients. Clin Cancer Res 2008; 14: 123-9. (Pubitemid 351377986)
41. Ong CW, Kim LG, Kong HH, Low LY, Iacopetta B, Soong R, Salto-Tellez M,. CD133 expression predicts for non-response to chemotherapy in colorectal cancer. Mod Pathol 2010; 23: 450-7.
42. Rappa G, Fodstad O, Lorico A,. The stem cell-associated antigen CD133 (Prominin-1) is a molecular therapeutic target for metastatic melanoma. Stem Cells 2008; 26: 3008-17.
43. Yang XH, Wu QL, Yu XB, Xu CX, Ma BF, Zhang XM, Li SN, Lahn BT, Xiang AP,. Nestin expression in different tumours and its relevance to malignant grade. J Clin Pathol 2008; 61: 467-73. (Pubitemid 351518229)
44. Marotta LL, Polyak K,. Cancer stem cells: a model in the making. Curr Opin Genet Dev 2009; 19: 44-50.
45. Nilsson B, Nilsson O, Ahlman H,. Treatment of gastrointestinal stromal tumours: imatinib, sunitinib-and then? Expert Opin Investig Drugs 2009; 18: 457-68.
46. Gramza AW, Corless CL, Heinrich MC,. Resistance to tyrosine kinase inhibitors in gastrointestinal stromal tumors. Clin Cancer Res 2009; 15: 7510-8.
47. Papaetis GS, Syrigos KN,. Sunitinib: a multitargeted receptor tyrosine kinase inhibitor in the era of molecular cancer therapies. BioDrugs 2009; 23: 377-89.
48. Dewaele B, Wasag B, Cools J, Sciot R, Prenen H, Vandenberghe P, Wozniak A, Schoffski P, Marynen P, Debiec-Rychter M,. Activity of dasatinib, a dual SRC/ABL kinase inhibitor, and IPI-504, a heat shock protein 90 inhibitor, against gastrointestinal stromal tumor-associated PDGFRAD842V mutation. Clin Cancer Res 2008; 14: 5749-58.
49. Weisberg E, Wright RD, Jiang J, Ray A, Moreno D, Manley PW, Fabbro D, Hall-Meyers E, Catley L, Podar K, Kung AL, Griffin JD,. Effects of PKC412, nilotinib, and imatinib against GIST-associated PDGFRA mutants with differential imatinib sensitivity. Gastroenterology 2006; 131: 1734-42. (Pubitemid 44958515)
50. Tarn C, Rink L, Merkel E, Flieder D, Pathak H, Koumbi D, Testa JR, Eisenberg B, von Mehren M, Godwin AK,. Insulin-like growth factor 1 receptor is a potential therapeutic target for gastrointestinal stromal tumors. Proc Natl Acad Sci U S A 2008; 105: 8387-92. (Pubitemid 351904765)