Genetic diversity of Turkish olive varieties assessed by simple sequence repeat and sequence-related amplified polymorphism markers

Crop Science

Volumn 51, Issue 4, 2011, Pages 1646-1654

  Işik, Neslihan ^a   Doǧanlar, Sami ^a   Frary, Anne ^a  

^a IZMIR INSTITUTE OF TECHNOLOGY   (Turkey)

Author keywords

[No Author keywords available]

Indexed keywords

OLEA EUROPAEA;

EID: 79959616380     PISSN: 0011183X     EISSN: 14350653     Source Type: Journal    
DOI: 10.2135/cropsci2010.11.0625     Document Type: Article

References (31)

1. Aranzana, M.J., A. Pineda, P. Cosson, E. Dirlewanger, J. Ascasibar, G. Cipriani, D. Ryder, R. Testolin, A. Abbott, G.J. King, A.F. Iezzoni, and P. Arú. 2003. A set of simple-sequence repeat (SSR) markers covering the Prunus genome. Theor. Appl. Genet. 106:819-825.
2. Baldoni, L., N. Tosti, C. Ricciolini, A. Belaj, S. Arcioni, G. Pannelli, M.A. Germana, M. Mulas, and A. Porceddu. 2006. Genetic structure of wild and cultivated olives in the central Mediterranean basin. Ann. Bot. (London) 98:935-942. doi:10.1093/aob/mcl178
3. Belaj, A., Z. Satovic, G. Cipriani, L. Baldoni, R. Testolin, L. Rallo, and I. Trujillo. 2003. Comparative study of the discriminating capacity of RAPD, AFLP and SSR markers and of their eff ectiveness in establishing genetic relationships in olive. Theor. Appl. Genet. 107:736-744. doi:10.1007/s00122-003-1301-5
4. Besnard, G., P. Baradat, and A. Bervillé 2001. Genetic relationships in the olive (Olea europaea L.) reflect multilocal selection of cultivars. Theor. Appl. Genet. 102:251-258. doi:10.1007/s001220051642
5. Bracci, T., M. Busconi, C. Fogher, and L. Sebastiani. 2010. Molecular studies in olive Olea europaea L.): Overview on DNA marker applications and recent advances in genome analysis. Plant Cell Rep. 10.1007/s00299-010-0991-9.
6. Carriero, F., G. Fontanazza, F. Cellini, and G. Giorio. 2002. Identification of simple sequence repeat (SSRs) in olive (Olea europaea L.). Theor. Appl. Genet. 104:301-307. doi:10.1007/s001220100691
7. Cipriani, G., M.T. Marrazzo, R. Marconi, A. Cimato, and R. Testolin. 2002. Microsatellite markers isolated in olive (Olea europaea L.) are suitable for individual fingerprinting and reveal polymorphism within ancient cultivars. Theor. Appl. Genet. 104:223-228. doi:10.1007/s001220100685
8. De la Rosa, R., C.M. James, and K.R. Tobutt. 2002. Isolation and characterization of polymorphic SSRs in olive (Olea europaea L.) and their transferability to other genera in the Oleaceae. Mol. Ecol. Notes 2:265-267. doi:10.1046/j.1471-8286.2002.00217.x
9. Dice, L.R. 1945. Measures of the amount of ecologic association between species. Ecology 26:297-302. doi:10.2307/1932409
10. Doveri, S., and L. Baldoni. 2007. Olive. In C. Kole (ed.) Genome mapping and molecular breeding in plants: Fruits and nuts. Springer-Verlag, Berlin, Germany.
11. Doveri, S., F. Sabino Gil, A. Diaz, S. Reale, M. Busconi, A. da Camara Machado, A. Martin, C. Fogher, P. Donini, and D. Lee. 2008. Standardization of a set of microsatellite markers for use in cultivar identification studies in olive (Olea europaea L.). Sci. Hortic. (Amsterdam) 116:367-373. doi:10.1016/j.scienta.2008.02.005
12. FAOSTAT. 2009. Production of crops. Available at http://faostat.fao.org/site/567/default.aspx#ancor (verified 9 May 2011). FAO, Rome, Italy.
13. Grigg, D. 2001. Olive oil, the Mediterranean and the world. Geo-Journal 53:163-172. doi:10.1023/A:1015702327546
14. Li, G., and C.F. Quiros. 2001. Related amplified polymorphisms (SRAP), a new marker system based on a simple PCR reaction: Its application to mapping and gene tagging in Brassica. Theor. Appl. Genet. 103:455-461. doi:10.1007/s001220100570
15. Loumou, A., and C. Giourga. 2003. Olive groves: The life and identity of the Mediterranean. Agric. Human Values 20:87-95. doi:10.1023/A:1022444005336
16. Mantel, N. 1967. The detection of disease clustering and a generalized regression approach. Cancer Res. 27:209-220.
17. Milbourne, D., R. Meyer, J.E. Bradshaw, E. Baird, N. Bonar, J. Provan, W. Powell, and R. Waugh. 1997. Comparison of PCR-based marker systems for the analysis of genetic relationships in cultivated potato. Mol. Breed. 3:127-136. doi:10.1023/A:1009633005390
18. Muzzalupo, I., N. Lombardo, A. Salimonti, M.A. Caravita, M. Pellegrino, and E. Perri. 2008. Molecular characterization of Italian olive cultivars by microsatellite markers. Adv. Hort. Sci. 22:142-148.
19. Owen, C.A., E.C. Bita, G. Banilas, and S.E. Hajjar. 2005. AFLP reveals structural details of genetic diversity within cultivated olive germplasm from the Eastern Mediterranean. Theor. Appl. Genet. 110:1169-1176. doi:10.1007/s00122-004-1861-z
20. Ozkaya, M.T., E. Cakir, Z. Gokbayrak, H. Ercan, and N. Taskin. 2006. Morphological and molecular characterization of Derik Halhali olive (Olea europaea L.) accessions grown in Derik-Mardin province of Turkey. Sci. Hortic. (Amsterdam) 108:205-209. doi:10.1016/j.scienta.2006.01.016
21. Rohlf, F.J. 2004. NTSYS-pc numerical taxonomy and multivariate analysis system. Version 2.11V. Exeter software, Setauket, NY.
22. Roldan-Ruiz, I., J. Dendaw, E. Van Bockstael, A. Depicker, and M. De Loose. 2000. AFLP markers reveal high polymorphic rates in ryegrasses (Lolium spp.). Mol. Breed. 6:125-134. doi:10.1023/A:1009680614564
23. Rotondi, A., M. Magli, C. Ricciolini, and L. Baldoni. 2003. Morphological and molecular analyses for the characterization of a group of Italian olive cultivars. Euphytica 132:129-137. doi:10.1023/A:1024670321435
24. Roubos, K., M. Moustakas, and F.A. Aravanopoulos. 2010. Molecular identification of Greek olive (Olea europaea) cultivars based on microsatellite loci. Genet. Mol. Res. 9:1865-1876. doi:10.4238/vol9-3gmr916
25. Saghai-Maroof, M.A., K.M. Soliman, R.A. Jorgensen, and R.W. Allard. 1984. Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics. Proc. Natl. Acad. Sci. USA 81:8014-8018. doi:10.1073/pnas.81.24.8014
26. Sarri, V., L. Baldoni, A. Porceddu, and N.G. Cultrera. 2006. Microsatellite markers are powerful tools for discriminating among olive cultivars and assigning them to geographically defined populations. Genome 49:1606-1615. doi:10.1139/G06-126
27. Sefc, K.M., M.S. Lopes, D. Mendonca, S.M. Dos Rodrigues, M.M. Da Camara Laimer, and A. Machado. 2000. Identifi-cation of microsatellite loci in olive (Olea europaea) and their characterization in Italian and Iberian olive trees. Mol. Ecol. 9:1171-1193. doi:10.1046/j.1365-294x.2000.00954.x
28. Taamalli, W., F. Geuna, S.B. Temime, D. Bassi, D. Daoud, and M. Zarrouk. 2007. Using microsatellite markers to characterize the main Tunisian olive cultivars Chemlali and Chetoui. J. Hortic. Sci. Biotechnol. 82:25-28.
29. Visioli, F., A. Poli, and C. Galli. 2002. Antioxidant and other biological activities of phenols from olives and olive oil. Med. Res. Rev. 22:65-75. doi:10.1002/med.1028
30. Zietkiewicz, E., A. Rafalski, and D. Labuda. 1994. Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics 20:176-178. doi:10.1006/geno.1994.1151
31. Zohary, D., and P. Spiegel-Roy. 1975. Beginnings of fruit growing in the Old World. Science 187:319-327. doi:10.1126/science.187.4174.319