-
1
-
-
33847210742
-
A perspective on microarrays: Current applications, pitfalls, and potential uses
-
Jaluria P, Konstantopoulos K, Betenbaugh M, Shiloach J (2007) A perspective on microarrays: current applications, pitfalls, and potential uses. Microbial Cell Factories 6: 4.
-
(2007)
Microbial Cell Factories
, vol.6
, pp. 4
-
-
Jaluria, P.1
Konstantopoulos, K.2
Betenbaugh, M.3
Shiloach, J.4
-
2
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary dna microarray
-
Schena M, Shalon D, Davis RW, Brown PO (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270: 467–470.
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
3
-
-
8844269509
-
In control: Systematic assessment of microarray performance
-
van Bakel H, Holstege FC (2004) In control: systematic assessment of microarray performance. EMBO Reports 5: 964–969.
-
(2004)
EMBO Reports
, vol.5
, pp. 964-969
-
-
Van Bakel, H.1
Holstege, F.C.2
-
4
-
-
0036848010
-
Sequential activation of signaling pathways during innate immune responses in drosophila
-
Boutros M, Agaisse H, Perrimon N (2002) Sequential activation of signaling pathways during innate immune responses in Drosophila. Developmental Cell 3: 711–722.
-
(2002)
Developmental Cell
, vol.3
, pp. 711-722
-
-
Boutros, M.1
Agaisse, H.2
Perrimon, N.3
-
6
-
-
0034598746
-
Distinct types of diffuse large b-cell lymphoma identified by gene expression profiling
-
Alizadeh AA, Eisen MB, Davis RE, Ma C, Lossos IS, Rosenwald A, et al. (2000) Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature 403: 503–511.
-
(2000)
Nature
, vol.403
, pp. 503-511
-
-
Alizadeh, A.A.1
Eisen, M.B.2
Davis, R.E.3
Ma, C.4
Lossos, I.S.5
Rosenwald, A.6
-
7
-
-
0033569406
-
Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
-
Golub TR, Slonim DK, Tamayo P, Huard C, Gaasenbeek M, Mesirov JP, et al. (1999) Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 286: 531–537.
-
(1999)
Science
, vol.286
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
Mesirov, J.P.6
-
8
-
-
18244409687
-
Gene expression profiling predicts clinical outcome of breast cancer
-
van‘t Veer LJ, Dai H, van de Vijver MJ, He YD, Hart AA, Mao M, et al. (2002) Gene expression profiling predicts clinical outcome of breast cancer. Nature 415: 530–536.
-
(2002)
Nature
, vol.415
, pp. 530-536
-
-
Veer, V.1
LJ, D.H.2
Van De Vijver, M.J.3
He, Y.D.4
Hart, A.A.5
Mao, M.6
-
9
-
-
34247549347
-
Genome-wide molecular profiles of hcv-induced dysplasia and hepatocellular carcinoma
-
Wurmbach E, Chen YB, Khitrov G, Zhang W, Roayaie S, Schwartz M, et al. (2007) Genome-wide molecular profiles of HCV-induced dysplasia and hepatocellular carcinoma. Hepatology 45: 938–947.
-
(2007)
Hepatology
, vol.45
, pp. 938-947
-
-
Wurmbach, E.1
Chen, Y.B.2
Khitrov, G.3
Zhang, W.4
Roayaie, S.5
Schwartz, M.6
-
11
-
-
0036900895
-
Fundamentals of experimental design for cdna microarrays
-
Churchill GA (2002) Fundamentals of experimental design for cDNA microarrays. Nature Genetics32 Suppl: 490–495.
-
(2002)
Nature Genetics
, vol.32
, pp. 490-495
-
-
Churchill, G.A.1
-
13
-
-
24944534978
-
Real-time pcr for mrna quantitation
-
Wong ML, Medrano JF (2005) Real-time PCR for mRNA quantitation. BioTechniques 39: 75–85.
-
(2005)
Biotechniques
, vol.39
, pp. 75-85
-
-
Wong, M.L.1
Medrano, J.F.2
-
14
-
-
33847261476
-
The application ofmicroarray technology to the analysis of the cancer genome
-
Cowell JK, Hawthorn L (2007) The application ofmicroarray technology to the analysis of the cancer genome. Current Molecular Medicine 7: 103–120.
-
(2007)
Current Molecular Medicine
, vol.7
, pp. 103-120
-
-
Cowell, J.K.1
Hawthorn, L.2
-
16
-
-
39049183139
-
Discovery of differentially expressed genes: Technical considerations
-
Rosok O, Sioud M (2007) Discovery of differentially expressed genes: technical considerations. Methods in Molecular Biology (Clifton, N.J.)360: 115–129.
-
(2007)
Methods in Molecular Biology (Clifton, N.J.)
, vol.360
, pp. 115-129
-
-
Rosok, O.1
Sioud, M.2
-
18
-
-
0035145527
-
Quantitative assessment of dna microarrays – comparison with northern blot analyses
-
Taniguchi M, Miura K, Iwao H, Yamanaka S (2001) Quantitative assessment of DNA microarrays – comparison with Northern blot analyses. Genomics 71: 34–39.
-
(2001)
Genomics
, vol.71
, pp. 34-39
-
-
Taniguchi, M.1
Miura, K.2
Iwao, H.3
Yamanaka, S.4
-
19
-
-
0036898577
-
Microarray data normalization and transformation
-
Quackenbush J (2002) Microarray data normalization and transformation. Nature Genetics32 Suppl: 496–501.
-
(2002)
Nature Genetics
, vol.32
, pp. 496-501
-
-
Quackenbush, J.1
-
20
-
-
20644435808
-
Robotic spotting of cdna and oligonucleotide microarrays
-
Auburn RP, Kreil DP, Meadows LA, Fischer B, Matilla SS, Russell S (2005) Robotic spotting of cDNA and oligonucleotide microarrays. Trends in Biotechnology 23: 374–379.
-
(2005)
Trends in Biotechnology
, vol.23
, pp. 374-379
-
-
Auburn, R.P.1
Kreil, D.P.2
Meadows, L.A.3
Fischer, B.4
Matilla, S.S.5
Russell, S.6
-
21
-
-
32944474312
-
Study on the dynamic behavior of a dna microarray
-
Wang Y, Li Y, Liu S, Shen W, Jiang B, Xu X, et al. (2005) Study on the dynamic behavior of a DNA microarray. Journal of Nanoscience and Nanotechnology 5: 1249–1255.
-
(2005)
Journal of Nanoscience and Nanotechnology
, vol.5
, pp. 1249-1255
-
-
Wang, Y.1
Li, Y.2
Liu, S.3
Shen, W.4
Jiang, B.5
Xu, X.6
-
23
-
-
0037095769
-
Accuracy and calibration of commercial oligonucleotide and custom cdna microarrays
-
Yuen T, Wurmbach E, Pfeffer RL, Ebersole BJ, Sealfon SC (2002) Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays. Nucleic Acids Research 30: e48.
-
(2002)
Nucleic Acids Research
, vol.30
-
-
Yuen, T.1
Wurmbach, E.2
Pfeffer, R.L.3
Ebersole, B.J.4
Sealfon, S.C.5
-
24
-
-
10244219858
-
Accessing genetic information with high-density dna arrays
-
Chee M, Yang R, Hubbell E, Berno A, Huang XC, Stern D, et al. (1996) Accessing genetic information with high-density DNA arrays. Science 274: 610–614.
-
(1996)
Science
, vol.274
, pp. 610-614
-
-
Chee, M.1
Yang, R.2
Hubbell, E.3
Berno, A.4
Huang, X.C.5
Stern, D.6
-
25
-
-
10544256600
-
Expression monitoring by hybridization to high-density oligonucleotide arrays
-
Lockhart DJ, Dong H, Byrne MC, Follettie MT, Gallo MV, Chee MS, et al. (1996) Expression monitoring by hybridization to high-density oligonucleotide arrays. Nature Biotechnology 14: 1675–1680.
-
(1996)
Nature Biotechnology
, vol.14
, pp. 1675-1680
-
-
Lockhart, D.J.1
Dong, H.2
Byrne, M.C.3
Follettie, M.T.4
Gallo, M.V.5
Chee, M.S.6
-
26
-
-
0036545952
-
An assessment of motorola codelink microarray performance for gene expression profiling applications
-
Ramakrishnan R, Dorris D, Lublinsky A, Nguyen A, Domanus M, Prokhorova A, et al. (2002) An assessment of Motorola CodeLink microarray performance for gene expression profiling applications. Nucleic Acids Research 30: e30.
-
(2002)
Nucleic Acids Research
, vol.30
-
-
Ramakrishnan, R.1
Dorris, D.2
Lublinsky, A.3
Nguyen, A.4
Domanus, M.5
Prokhorova, A.6
-
27
-
-
0141905890
-
Evaluation of gene expression measurements from commercialmicroarray platforms
-
Tan PK, Downey TJ, Spitznagel EL Jr, Xu P, Fu D, Dimitrov DS, et al. (2003) Evaluation of gene expression measurements from commercialmicroarray platforms. Nucleic Acids Research 31: 5676–5684.
-
(2003)
Nucleic Acids Research
, vol.31
, pp. 5676-5684
-
-
Tan, P.K.1
Downey, T.J.2
Spitznagel, E.L.3
Xu, P.4
Fu, D.5
Dimitrov, D.S.6
-
28
-
-
2642561079
-
Are data from different gene expression microarray platforms comparable?
-
Järvinen AK, Hautaniemi S, Edgren H, Auvinen P, Saarela J, Kallioniemi OP, et al. (2004) Are data from different gene expression microarray platforms comparable? Genomics 83: 1164–1168.
-
(2004)
Genomics
, vol.83
, pp. 1164-1168
-
-
Järvinen, A.K.1
Hautaniemi, S.2
Edgren, H.3
Auvinen, P.4
Saarela, J.5
Kallioniemi, O.P.6
-
29
-
-
23644453736
-
Three microarray platforms: An analysis of their concordance in profiling gene expression
-
Petersen D, Chandramouli GV, Geoghegan J, Hilburn J, Paarlberg J, Kim CH, et al. (2005) Three microarray platforms: an analysis of their concordance in profiling gene expression. BMC Genomics 6: 63.
-
(2005)
BMC Genomics
, vol.6
, pp. 63
-
-
Petersen, D.1
Chandramouli, G.V.2
Geoghegan, J.3
Hilburn, J.4
Paarlberg, J.5
Kim, C.H.6
-
30
-
-
33748491517
-
Themicroarray quality control (Maqc) project shows inter- and intraplatform reproducibility of gene expression measurements
-
Shi L, Reid LH, Jones WD, Shippy R, Warrington JA, Baker SC, et al. (2006) TheMicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. Nature Biotechnology 24: 1151–1161.
-
(2006)
Nature Biotechnology
, vol.24
, pp. 1151-1161
-
-
Shi, L.1
Reid, L.H.2
Jones, W.D.3
Shippy, R.4
Warrington, J.A.5
Baker, S.C.6
-
31
-
-
0034694128
-
Effect of experimental treatment on housekeeping gene expression: Validation by real-time, quantitative rt-pcr
-
Schmittgen TD, Zakrajsek BA (2000) Effect of experimental treatment on housekeeping gene expression: validation by real-time, quantitative RT-PCR. Journal of Biochemical and Biophysical Methods 46: 69–81.
-
(2000)
Journal of Biochemical and Biophysical Methods
, vol.46
, pp. 69-81
-
-
Schmittgen, T.D.1
Zakrajsek, B.A.2
-
32
-
-
34548034236
-
De-regulation of common housekeeping genes in hepatocellular carcinoma
-
Waxman S, Wurmbach E (2007) De-regulation of common housekeeping genes in hepatocellular carcinoma. BMC Genomics 8: 243.
-
(2007)
BMC Genomics
, vol.8
, pp. 243
-
-
Waxman, S.1
Wurmbach, E.2
-
33
-
-
0037129827
-
Accurate normalization of real-time quantitative rt-pcr data by geometric averaging of multiple internal control genes
-
Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, et al. (2002) Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biology 3: 34.
-
(2002)
Genome Biology
, vol.3
, pp. 34
-
-
Vandesompele, J.1
De Preter, K.2
Pattyn, F.3
Poppe, B.4
Van Roy, N.5
De Paepe, A.6
-
34
-
-
0036808580
-
Validated genomic approach to study differentially expressed genes in complex tissues
-
Wurmbach E, Gonzalez-Maeso J, Yuen T, Ebersole BJ, Mastaitis JW, Mobbs CV, et al. (2002) Validated genomic approach to study differentially expressed genes in complex tissues. Neurochemical Research 27: 1027–1033.
-
(2002)
Neurochemical Research
, vol.27
, pp. 1027-1033
-
-
Wurmbach, E.1
Gonzalez-Maeso, J.2
Yuen, T.3
Ebersole, B.J.4
Mastaitis, J.W.5
Mobbs, C.V.6
-
35
-
-
15944383378
-
Acute induction of gene expression in brain and liver by insulin-induced hypoglycemia
-
Mastaitis JW, Wurmbach E, Cheng H, Sealfon SC, Mobbs CV (2005) Acute induction of gene expression in brain and liver by insulin-induced hypoglycemia. Diabetes 54: 952–958.
-
(2005)
Diabetes
, vol.54
, pp. 952-958
-
-
Mastaitis, J.W.1
Wurmbach, E.2
Cheng, H.3
Sealfon, S.C.4
Mobbs, C.V.5
-
36
-
-
0141753077
-
Transcriptome fingerprints distinguish hallucinogenic and nonhallucinogenic 5-hydroxytryptamine 2a receptor agonist effects in mouse somatosensory cortex
-
Gonzalez-Maeso J, Yuen T, Ebersole BJ, Wurmbach E, Lira A, Zhou M, et al. (2003) Transcriptome fingerprints distinguish hallucinogenic and nonhallucinogenic 5-hydroxytryptamine 2A receptor agonist effects in mouse somatosensory cortex. Journal of Neuroscience 23: 8836–8843.
-
(2003)
Journal of Neuroscience
, vol.23
, pp. 8836-8843
-
-
Gonzalez-Maeso, J.1
Yuen, T.2
Ebersole, B.J.3
Wurmbach, E.4
Lira, A.5
Zhou, M.6
-
37
-
-
27844483847
-
Rna amplification strategies for small sample populations
-
Ginsberg SD (2005) RNA amplification strategies for small sample populations. Methods 37: 229–237.
-
(2005)
Methods
, vol.37
, pp. 229-237
-
-
Ginsberg, S.D.1
-
38
-
-
23644439004
-
A robust method for the amplification of rna in the sense orientation
-
Marko NF, Frank B, Quackenbush J, Lee NH (2005) A robust method for the amplification of RNA in the sense orientation. BMC Genomics 6: 27.
-
(2005)
BMC Genomics
, vol.6
, pp. 27
-
-
Marko, N.F.1
Frank, B.2
Quackenbush, J.3
Lee, N.H.4
|