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Volumn 27, Issue 7, 2011, Pages 1669-1678

Comparisons of protein extraction procedures and quantification methods for the proteomic analysis of Gram-positive Paenibacillus sp. strain D9

Author keywords

2D PAGE; Gram positive bacteria; Paenibacillus sp.; Protein extraction; Protein quantification

Indexed keywords

2D-PAGE; GRAM-POSITIVE BACTERIUM; PAENIBACILLUS SP.; PROTEIN EXTRACTION; PROTEIN QUANTIFICATION;

EID: 79959526182     PISSN: 09593993     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11274-010-0621-2     Document Type: Article
Times cited : (4)

References (44)
  • 1
    • 6544243983 scopus 로고    scopus 로고
    • A mini-sonicator to rapidly disrupt bacterial spores for DNA analysis
    • Belgrader P, Hansford D, Kovacs GTA (1999) A mini-sonicator to rapidly disrupt bacterial spores for DNA analysis. Anal Chem 71: 4232-4236.
    • (1999) Anal Chem , vol.71 , pp. 4232-4236
    • Belgrader, P.1    Hansford, D.2    Kovacs, G.T.A.3
  • 2
    • 0036023036 scopus 로고    scopus 로고
    • Disrupting Escherichia coli: a comparison of methods
    • Benov L, Al-Ibraheem J (2002) Disrupting Escherichia coli: a comparison of methods. J Biochem Mol Biol 35: 428-431.
    • (2002) J Biochem Mol Biol , vol.35 , pp. 428-431
    • Benov, L.1    Al-Ibraheem, J.2
  • 5
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
    • Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72: 248-254.
    • (1976) Anal Biochem , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 6
    • 0000076124 scopus 로고
    • The utilization of certain hydrocarbons by microorganisms
    • Bushnell DL, Haas HF (1941) The utilization of certain hydrocarbons by microorganisms. Kansas Agric Exp Stn 199: 653-673.
    • (1941) Kansas Agric Exp Stn , vol.199 , pp. 653-673
    • Bushnell, D.L.1    Haas, H.F.2
  • 7
    • 34248598796 scopus 로고    scopus 로고
    • Trends in sample preparation for classical and second generation proteomics
    • Caňas B, Pineiro C, Calvo E, Ferrer DL, Gallardo JM (2007) Trends in sample preparation for classical and second generation proteomics. J Chromatogr A 1153: 235-258.
    • (2007) J Chromatogr A , vol.1153 , pp. 235-258
    • Caňas, B.1    Pineiro, C.2    Calvo, E.3    Ferrer, D.L.4    Gallardo, J.M.5
  • 8
    • 0035416445 scopus 로고    scopus 로고
    • Continuous spore disruption using radially focused high frequency ultrasound
    • Chandler DP, Brown J, Bruckner-Lea CJ (2001) Continuous spore disruption using radially focused high frequency ultrasound. Anal Chem 73: 3784-3789.
    • (2001) Anal Chem , vol.73 , pp. 3784-3789
    • Chandler, D.P.1    Brown, J.2    Bruckner-Lea, C.J.3
  • 10
    • 77953656998 scopus 로고    scopus 로고
    • A comparison of protein extraction methods suitable for gel-based proteomic studies of aphid proteins
    • Cilia M, Fish T, Yang X, Mclaughlin M, Thannhauser TW, Gray S (2009) A comparison of protein extraction methods suitable for gel-based proteomic studies of aphid proteins. J Biomol Tech 20: 201-215.
    • (2009) J Biomol Tech , vol.20 , pp. 201-215
    • Cilia, M.1    Fish, T.2    Yang, X.3    McLaughlin, M.4    Thannhauser, T.W.5    Gray, S.6
  • 14
    • 0032486514 scopus 로고    scopus 로고
    • Optimized release of recombinant proteins by ultrasonication of E. coli cells
    • Feliu JX, Cubarsi R, Villaverde A (1998) Optimized release of recombinant proteins by ultrasonication of E. coli cells. Biotechnol Bioeng 58: 536-540.
    • (1998) Biotechnol Bioeng , vol.58 , pp. 536-540
    • Feliu, J.X.1    Cubarsi, R.2    Villaverde, A.3
  • 16
    • 71649086893 scopus 로고    scopus 로고
    • Diesel degradation and biosurfactant production by gram-positive isolates
    • Ganesh A, Lin J (2009) Diesel degradation and biosurfactant production by gram-positive isolates. Afr J Biotechnol 21: 5847-5854.
    • (2009) Afr J Biotechnol , vol.21 , pp. 5847-5854
    • Ganesh, A.1    Lin, J.2
  • 17
    • 0036085972 scopus 로고    scopus 로고
    • Methods for disruption of microbial cells for potential use in the dairy industry- a review
    • Geciova J, Bury D, Jelen P (2002) Methods for disruption of microbial cells for potential use in the dairy industry- a review. Int Dairy J 12: 541-553.
    • (2002) Int Dairy J , vol.12 , pp. 541-553
    • Geciova, J.1    Bury, D.2    Jelen, P.3
  • 19
    • 33646801909 scopus 로고    scopus 로고
    • Efficient mechanical cell disruption of Escherichia coli by an ultrasonicator and recovery of intracellular hepatitis B core antigen
    • Ho CW, Chewa TK, Ling TC, Kamaruddin S, Tan WS, Tey BT (2006) Efficient mechanical cell disruption of Escherichia coli by an ultrasonicator and recovery of intracellular hepatitis B core antigen. Process Biochem 41: 1829-1834.
    • (2006) Process Biochem , vol.41 , pp. 1829-1834
    • Ho, C.W.1    Chewa, T.K.2    Ling, T.C.3    Kamaruddin, S.4    Tan, W.S.5    Tey, B.T.6
  • 20
    • 0028872473 scopus 로고
    • An efficient method for preparation of extracts from gram-positive bacteria for comparison of cellular protein patterns
    • Kämpfer P (1995) An efficient method for preparation of extracts from gram-positive bacteria for comparison of cellular protein patterns. J Microbiol Methods 21: 55-60.
    • (1995) J Microbiol Methods , vol.21 , pp. 55-60
    • Kämpfer, P.1
  • 21
    • 34648822321 scopus 로고    scopus 로고
    • A proteomics strategy for the analysis of bacterial biodegradation pathways
    • Kim SI, Choi JS, Kahng HY (2007) A proteomics strategy for the analysis of bacterial biodegradation pathways. OMICS 11: 280-294.
    • (2007) Omics , vol.11 , pp. 280-294
    • Kim, S.I.1    Choi, J.S.2    Kahng, H.Y.3
  • 22
    • 0029031128 scopus 로고
    • Optimal disruption methods for the selective recovery of β-galactosidase from Escherichia coli
    • Kuboi R, Umakoshi H, Takagi N, Komasawa I (1995) Optimal disruption methods for the selective recovery of β-galactosidase from Escherichia coli. J Ferment Bioeng 79: 335-341.
    • (1995) J Ferment Bioeng , vol.79 , pp. 335-341
    • Kuboi, R.1    Umakoshi, H.2    Takagi, N.3    Komasawa, I.4
  • 23
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680-685.
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 26
    • 54049114610 scopus 로고    scopus 로고
    • A study of cell disruption of Candida mogii by glass bead mill for the recovery of xylose reductase
    • Mayerhoff ZDVL, Francob TT, Roberto IC (2008) A study of cell disruption of Candida mogii by glass bead mill for the recovery of xylose reductase. Sep Purif Technol 63: 706-709.
    • (2008) Sep Purif Technol , vol.63 , pp. 706-709
    • Mayerhoff, Z.D.V.L.1    Francob, T.T.2    Roberto, I.C.3
  • 27
    • 0028801947 scopus 로고
    • Process-scale disruption of microorganisms
    • Middelberg APJ (1995) Process-scale disruption of microorganisms. Biotechnol Adv 13: 491-551.
    • (1995) Biotechnol Adv , vol.13 , pp. 491-551
    • Middelberg, A.P.J.1
  • 28
    • 79959519442 scopus 로고    scopus 로고
    • Comparison of different protein quantitation methods
    • Publication No: 5988-6576EN
    • Neumann T (2002) Comparison of different protein quantitation methods. Agilent Technol: 1-8. Publication No: 5988-6576EN.
    • (2002) Agilent Technol , vol.1-8
    • Neumann, T.1
  • 29
    • 79959514475 scopus 로고    scopus 로고
    • BugBuster® protein extraction reagent-user protocol TB245 Rev E 0304
    • Novagen San Diego
    • Novagen (2008) BugBuster® protein extraction reagent-user protocol TB245 Rev E 0304. EMD Biosciences Inc, San Diego, pp 1-8.
    • (2008) EMD Biosciences Inc , pp. 1-8
  • 30
    • 0028821730 scopus 로고
    • Polypeptide amino acid composition and isoelectric point
    • Patrickios CS, Yamasaki EN (1995) Polypeptide amino acid composition and isoelectric point. Anal Biochem 231: 82-91.
    • (1995) Anal Biochem , vol.231 , pp. 82-91
    • Patrickios, C.S.1    Yamasaki, E.N.2
  • 32
    • 0020717166 scopus 로고
    • Experience with a 20 litre industrial bead mill for the disruption of microorganism
    • Shütte H, Kroner KH, Hustedt H, Kula MR (1983) Experience with a 20 litre industrial bead mill for the disruption of microorganism. Enzyme Microb Tech 5: 143-148.
    • (1983) Enzyme Microb Tech , vol.5 , pp. 143-148
    • Shütte, H.1    Kroner, K.H.2    Hustedt, H.3    Kula, M.R.4
  • 33
    • 0022705194 scopus 로고
    • Calculation of the isoelectric points of polypeptides from the amino acid composition
    • Skoog B, Wichman A (1986) Calculation of the isoelectric points of polypeptides from the amino acid composition. Trends Anal Chem 5: 82-83.
    • (1986) Trends Anal Chem , vol.5 , pp. 82-83
    • Skoog, B.1    Wichman, A.2
  • 34
    • 0004249246 scopus 로고
    • San Francisco: W H Freeman
    • Sokal RR, Rohlf FJ (1981) Biometry. W H Freeman, San Francisco, p 776.
    • (1981) Biometry , pp. 776
    • Sokal, R.R.1    Rohlf, F.J.2
  • 35
    • 0031884931 scopus 로고    scopus 로고
    • Permeabilization of Streptococcus thermophilus and Lactobacillus delbrueckii subsp bulgaricus with ethanol
    • Somkuti GA, Dominiecki ME, Steinberg DH (1998) Permeabilization of Streptococcus thermophilus and Lactobacillus delbrueckii subsp bulgaricus with ethanol. Curr Microbiol 36: 202-206.
    • (1998) Curr Microbiol , vol.36 , pp. 202-206
    • Somkuti, G.A.1    Dominiecki, M.E.2    Steinberg, D.H.3
  • 36
    • 0031154198 scopus 로고    scopus 로고
    • Cell disruption of Escherichia coli by glass bead stirring for the recovery of recombinant proteins
    • Song DD, Jacques NA (1997) Cell disruption of Escherichia coli by glass bead stirring for the recovery of recombinant proteins. Anal Biochem 248: 300-301.
    • (1997) Anal Biochem , vol.248 , pp. 300-301
    • Song, D.D.1    Jacques, N.A.2
  • 37
    • 0016743230 scopus 로고
    • The bacterial wall and surface
    • Sutherland IW (1975) The bacterial wall and surface. Process Biochem 10: 4-8.
    • (1975) Process Biochem , vol.10 , pp. 4-8
    • Sutherland, I.W.1
  • 38
    • 4043133078 scopus 로고    scopus 로고
    • Evaluation of disruption methods for the release of intracellular recombinant protein from Escherichia coli for analytical purposes
    • Tkac J, Vostiar I, Menius CF (2004) Evaluation of disruption methods for the release of intracellular recombinant protein from Escherichia coli for analytical purposes. Biotechnol Appl Biochem 40: 33-88.
    • (2004) Biotechnol Appl Biochem , vol.40 , pp. 33-88
    • Tkac, J.1    Vostiar, I.2    Menius, C.F.3
  • 40
    • 0020055346 scopus 로고
    • A sensitive silver stain for detecting lipopolysaccharides in polyacrylamide gels
    • Tsai CM, Frasch CE (1982) A sensitive silver stain for detecting lipopolysaccharides in polyacrylamide gels. Anal Biochem 119: 115-119.
    • (1982) Anal Biochem , vol.119 , pp. 115-119
    • Tsai, C.M.1    Frasch, C.E.2
  • 43
    • 34547247140 scopus 로고    scopus 로고
    • New mechanical disruption method for extraction of whole cell protein from Candida albicans
    • Wong SF, Mak JW, Pook PCK (2007) New mechanical disruption method for extraction of whole cell protein from Candida albicans. Int Med Univ Bukit Jalil Kuala Lumpur Malays 38: 512-518.
    • (2007) Int Med Univ Bukit Jalil Kuala Lumpur Malays , vol.38 , pp. 512-518
    • Wong, S.F.1    Mak, J.W.2    Pook, P.C.K.3
  • 44
    • 33947573571 scopus 로고    scopus 로고
    • Qualitative and quantitative evaluation of protein extraction protocols for apple and strawberry fruit suitable for two-dimensional electrophoresis and mass spectrometry analysis
    • Zheng Q, Song J, Doncaster K, Rowland E, Byers DM (2007) Qualitative and quantitative evaluation of protein extraction protocols for apple and strawberry fruit suitable for two-dimensional electrophoresis and mass spectrometry analysis. J Agr Food Chem 55: 1663-1673.
    • (2007) J Agr Food Chem , vol.55 , pp. 1663-1673
    • Zheng, Q.1    Song, J.2    Doncaster, K.3    Rowland, E.4    Byers, D.M.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.