-
1
-
-
0033795404
-
Microsatellite markers reveal a spectrum of population structures in the malaria parasite Plasmodium falciparum
-
(16 co-authors)
-
Anderson TJ, Haubold B, Williams JT, et al. (16 co-authors). 2000. Microsatellite markers reveal a spectrum of population structures in the malaria parasite Plasmodium falciparum. Mol Biol Evol. 17:1467-1482.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 1467-1482
-
-
Anderson, T.J.1
Haubold, B.2
Williams, J.T.3
-
3
-
-
33746053291
-
Genetic diversity and structure of African Plasmodium falciparum populations in urban and rural areas
-
Bogreau H, Renaud F, Bouchiba H, et al. (15 co-authors). 2006. Genetic diversity and structure of African Plasmodium falciparum populations in urban and rural areas. Am J Trop Med Hyg. 74:953-959. (Pubitemid 351627399)
-
(2006)
American Journal of Tropical Medicine and Hygiene
, vol.74
, Issue.6
, pp. 953-959
-
-
Bogreau, H.1
Renaud, F.2
Bouchiba, H.3
Durand, P.4
Assi, S.-B.5
Henry, M.-C.6
Garnotel, E.7
Pradines, B.8
Fusai, T.9
Wade, B.10
Adehossi, E.11
Parola, P.12
Kamil, M.A.13
Puijalon, O.14
Rogier, C.15
-
4
-
-
67651111852
-
Genetic structure of Plasmodium falciparum populations between lowland and highland sites and antima-larial drug resistance in Western Kenya
-
Bonizzoni M, Afrane Y, Baliraine FN, Amenya DA, Githeko AK, Yan G. 2009. Genetic structure of Plasmodium falciparum populations between lowland and highland sites and antima-larial drug resistance in Western Kenya. Infect Genet Evol. 9:806-812.
-
(2009)
Infect Genet Evol
, vol.9
, pp. 806-812
-
-
Bonizzoni, M.1
Afrane, Y.2
Baliraine, F.N.3
Amenya, D.A.4
Githeko, A.K.5
Yan, G.6
-
5
-
-
24044551679
-
Clustered local transmission and asymptomatic Plasmodium falciparum and Plasmodium vivax malaria infections in a recently emerged, hypoendemic Peruvian Amazon community
-
Branch O, Casapia WM, Gamboa DV, Hernandez JN, Alava FF, Roncal N, Alvarez E, Perez EJ, Gotuzzo E. 2005. Clustered local transmission and asymptomatic Plasmodium falciparum and Plasmodium vivax malaria infections in a recently emerged, hypoendemic Peruvian Amazon community. Malar J. 4:27.
-
(2005)
Malar J
, vol.4
, pp. 27
-
-
Branch, O.1
Casapia, W.M.2
Gamboa, D.V.3
Hernandez, J.N.4
Alava, F.F.5
Roncal, N.6
Alvarez, E.7
Perez, E.J.8
Gotuzzo, E.9
-
6
-
-
45549092610
-
Genetic diversity of vaccine candidate antigens in Plasmodium falciparum isolates from the Amazon basin of Peru
-
Chenet SM, Branch OH, Escalante AA, Lucas CM, Bacon DJ. 2008. Genetic diversity of vaccine candidate antigens in Plasmodium falciparum isolates from the Amazon basin of Peru. Malar J. 7:93.
-
(2008)
Malar J
, vol.7
, pp. 93
-
-
Chenet, S.M.1
Branch, O.H.2
Escalante, A.A.3
Lucas, C.M.4
Bacon, D.J.5
-
7
-
-
0031036107
-
Natural selection on polymorphic malaria antigens and the search for a vaccine
-
DOI 10.1016/S0169-4758(96)10077-6
-
Conway DJ. 1997. Natural selection on polymorphic malaria antigens and the search for a vaccine. Parasitol Today. 13:26-29. (Pubitemid 27072544)
-
(1997)
Parasitology Today
, vol.13
, Issue.1
, pp. 26-29
-
-
Conway, D.J.1
-
8
-
-
0033551061
-
High recombination rate in natural populations of Plasmodium falciparum
-
DOI 10.1073/pnas.96.8.4506
-
Conway DJ, Roper C, Oduola AM, Arnot DE, Kremsner PG, Grobusch MP, Curtis CF, Greenwood BM. 1999. High recombination rate in natural populations of Plasmodium falciparum. Proc Natl Acad Sci USA. 96:4506-4511. (Pubitemid 29190366)
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, Issue.8
, pp. 4506-4511
-
-
Conway, D.J.1
Roper, C.2
Oduola, A.M.J.3
Arnot, D.E.4
Kremsner, P.G.5
Grobusch, M.P.6
Curtis, C.F.7
Greenwood, B.M.8
-
9
-
-
0030478757
-
Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data
-
Cornuet JM, Luikart G. 1996. Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144:2001-2014. (Pubitemid 26427944)
-
(1996)
Genetics
, vol.144
, Issue.4
, pp. 2001-2014
-
-
Cornuet, J.M.1
Luikart, G.2
-
10
-
-
34249912685
-
Microsatellite characterization of Plasmodium falciparum from symptomatic and non-symptomatic infections from the Western Amazon reveals the existence of non-symptomatic infection-associated genotypes
-
Dalla Martha RC, Tada MS, Ferreira RG, da Silva LH, Wunderlich G. 2007. Microsatellite characterization of Plasmodium falciparum from symptomatic and non-symptomatic infections from the Western Amazon reveals the existence of non-symptomatic infection-associated genotypes. Mem Inst Oswaldo Cruz. 102: 293-298. (Pubitemid 46869325)
-
(2007)
Memorias do Instituto Oswaldo Cruz
, vol.102
, Issue.3
, pp. 293-298
-
-
Dalla Martha, R.C.1
Tada, M.S.2
Ferreira, R.G.D.M.3
Da Silva, L.H.P.4
Wunderlich, G.5
-
11
-
-
0038516846
-
Significant linkage disequilibrium and high genetic diversity in a population of Plasmodium falciparum from an area (Republic of the Congo) highly endemic for malaria
-
Durand P, Michalakis Y, Cestier S, Oury B, Leclerc MC, Tibayrenc M, Renaud F. 2003. Significant linkage disequilibrium and high genetic diversity in a population of Plasmodium falciparum from an area (Republic of the Congo) highly endemic for malaria. Am J Trop Med Hyg. 68:345-349. (Pubitemid 38240526)
-
(2003)
American Journal of Tropical Medicine and Hygiene
, vol.68
, Issue.3
, pp. 345-349
-
-
Durand, P.1
Michalakis, Y.2
Cestier, S.3
Oury, B.4
Leclerc, M.C.5
Tibayrenc, M.6
Renaud, F.7
-
12
-
-
77953032930
-
Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows
-
Excoffier L, Lischer HE. 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour. 10:564-567.
-
(2010)
Mol Ecol Resour.
, vol.10
, pp. 564-567
-
-
Excoffier, L.1
Lischer, H.E.2
-
13
-
-
0029130796
-
Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population
-
Excoffier L, Slatkin M. 1995. Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population. Mol Biol Evol. 12:921-927.
-
(1995)
Mol Biol Evol
, vol.12
, pp. 921-927
-
-
Excoffier, L.1
Slatkin, M.2
-
14
-
-
0035076168
-
Detection of reduction in population size using data from microsatellite loci
-
DOI 10.1046/j.1365-294x.2001.01190.x
-
Garza JC, Williamson EG. 2001. Detection of reduction in population size using data from microsatellite loci. Mol Ecol. 10:305-318. (Pubitemid 32232339)
-
(2001)
Molecular Ecology
, vol.10
, Issue.2
, pp. 305-318
-
-
Garza, J.C.1
Williamson, E.G.2
-
15
-
-
3042659092
-
Genetic relatedness of Plasmodium falciparum isolates and the origin of allelic diversity at the merozoite surface protein-1 (MSP-1) locus in Brazil and Vietnam
-
Hoffmann EH, Ribolla PE, Ferreira MU. 2003. Genetic relatedness of Plasmodium falciparum isolates and the origin of allelic diversity at the merozoite surface protein-1 (MSP-1) locus in Brazil and Vietnam. Malar J. 2:24.
-
(2003)
Malar J
, vol.2
, pp. 24
-
-
Hoffmann, E.H.1
Ribolla, P.E.2
Ferreira, M.U.3
-
16
-
-
66249140986
-
Genetic diversity and population structure of Plasmodium falciparum in the Philippines
-
Iwagami M, Rivera PT, Villacorte EA, Escueta AD, Hatabu T, Kawazu S, Hayakawa T, Tanabe K, Kano S. 2009. Genetic diversity and population structure of Plasmodium falciparum in the Philippines. Malar J. 8:96.
-
(2009)
Malar J
, vol.8
, pp. 96
-
-
Iwagami, M.1
Rivera, P.T.2
Villacorte, E.A.3
Escueta, A.D.4
Hatabu, T.5
Kawazu, S.6
Hayakawa, T.7
Tanabe, K.8
Kano, S.9
-
17
-
-
0036283428
-
Genetic diversity and population structure of Plasmodium falciparum isolates from Dakar, Senegal, investigated from microsatellite and antigen determinant loci
-
DOI 10.1016/S1286-4579(02)01587-3, PII S1286457902015873
-
Leclerc MC, Durand P, de Meeus T, Robert V, Renaud F. 2002. Genetic diversity and population structure of Plasmodium falciparum isolates from Dakar, Senegal, investigated from microsatellite and antigen determinant loci. Microbes Infect. 4:685-692. (Pubitemid 34626980)
-
(2002)
Microbes and Infection
, vol.4
, Issue.7
, pp. 685-692
-
-
Leclerc, M.-C.1
Durand, P.2
De Meeus, T.3
Robert, V.4
Renaud, F.5
-
18
-
-
49449104278
-
Effects of Plasmodium falciparum mixed infections on in vitro antimalarial drug tests and genotyping
-
Liu S, Mu J, Jiang H, Su XZ. 2008. Effects of Plasmodium falciparum mixed infections on in vitro antimalarial drug tests and genotyping. Am J Trop Med Hyg. 79:178-184.
-
(2008)
Am J Trop Med Hyg
, vol.79
, pp. 178-184
-
-
Liu, S.1
Mu, J.2
Jiang, H.3
Su, X.Z.4
-
19
-
-
0031956719
-
Empirical evaluation of a test for identifying recently bottlenecked populations from allele frequency data
-
DOI 10.1046/j.1523-1739.1998.96388.x
-
Luikart G, Cornuet JM. 1998. Empirical evaluation of a test for identifying recently bottlenecked populations from allele frequency data. Conserv Biol. 12:228-237. (Pubitemid 28153821)
-
(1998)
Conservation Biology
, vol.12
, Issue.1
, pp. 228-237
-
-
Luikart, G.1
Cornuet, J.-M.2
-
20
-
-
6944255287
-
Genetic structure of Plasmodium falciparum populations in the Brazilian Amazon region
-
DOI 10.1086/424601
-
Machado RL, Povoa MM, Calvosa VS, Ferreira MU, Rossit AR, dos Santos EJ, Conway DJ. 2004. Genetic structure of Plasmodium falciparum populations in the Brazilian Amazon region. J Infect Dis. 190:1547-1555. (Pubitemid 39411002)
-
(2004)
Journal of Infectious Diseases
, vol.190
, Issue.9
, pp. 1547-1555
-
-
Machado, R.L.D.1
Povoa, M.M.2
Calvosa, V.S.P.3
Ferreira, M.U.4
Rossit, A.R.B.5
Dos Santos, E.J.M.6
Conway, D.J.7
-
21
-
-
77952370937
-
The selection landscape of malaria parasites
-
Mackinnon MJ, Marsh K. 2010. The selection landscape of malaria parasites. Science 328(5980):866-871.
-
(2010)
Science
, vol.328
, Issue.5980
, pp. 866-871
-
-
MacKinnon, M.J.1
Marsh, K.2
-
22
-
-
0037130233
-
Chromosome-wide SNPs reveal an ancient origin for Plasmodium falciparum
-
Mu J, Duan J, Makova KD, Joy DA, Huynh CQ, Branch OH, Li W-H, Su XZ. 2002. Chromosome-wide SNPs reveal an ancient origin for Plasmodium falciparum. Nature 418:323-324.
-
(2002)
Nature
, vol.418
, pp. 323-324
-
-
Mu, J.1
Duan, J.2
Makova, K.D.3
Joy, D.A.4
Huynh, C.Q.5
Branch, O.H.6
Li, W.-H.7
Su, X.Z.8
-
24
-
-
70350002258
-
Population dynamics of genetically diverse Plasmodium falciparum lineages: Community-based prospective study in rural Amazonia
-
Orjuela-Sanchez P, Da Silva-Nunes M, Da Silva NS, Scopel KK, Goncalves RM, Malafronte RS, Ferreira MU. 2009. Population dynamics of genetically diverse Plasmodium falciparum lineages: community-based prospective study in rural Amazonia. Parasi-tology 136:1097-1105.
-
(2009)
Parasi-tology
, vol.136
, pp. 1097-1105
-
-
Orjuela-Sanchez, P.1
Da Silva-Nunes, M.2
Da Silva, N.S.3
Scopel, K.K.4
Goncalves, R.M.5
Malafronte, R.S.6
Ferreira, M.U.7
-
25
-
-
0029061755
-
The distribution of linkage disequilibrium over anonymous genome regions
-
Peterson AC, Di Rienzo A, Lehesjoki AE, de la Chapelle A, Slatkin M, Freimer NB. 1995. The distribution of linkage disequilibrium over anonymous genome regions. Hum Mol Genet. 4:887-894.
-
(1995)
Hum Mol Genet
, vol.4
, pp. 887-894
-
-
Peterson, A.C.1
Di Rienzo, A.2
Lehesjoki, A.E.3
De La Chapelle, A.4
Slatkin, M.5
Freimer, N.B.6
-
26
-
-
0034118493
-
Inference of population structure using multilocus genotype data
-
Pritchard JK, Stephens M, Donnelly P. 2000. Inference of population structure using multilocus genotype data. Genetics 155:945-959. (Pubitemid 30397141)
-
(2000)
Genetics
, vol.155
, Issue.2
, pp. 945-959
-
-
Pritchard, J.K.1
Stephens, M.2
Donnelly, P.3
-
27
-
-
0021038163
-
Estimation of the coancestry coefficient: Basis for a short-term genetic distance
-
Reynolds J, Weir BS, Cockerham CC. 1983. Estimation of the coancestry coefficient: basis for a short-term genetic distance. Genetics 105:767-779. (Pubitemid 14246280)
-
(1983)
Genetics
, vol.105
, Issue.3
, pp. 767-779
-
-
Reynolds, J.1
Weir, B.S.2
Cockerham, C.C.3
-
28
-
-
0031183187
-
DDT, Global Strategies, and a Malaria Control Crisis in South America
-
Roberts DR, Laughlin LL, Hsheih P, Legters LJ. 1997. DDT, global strategies, and a malaria control crisis in South America. Emerg Infect Dis. 3:295-302. (Pubitemid 127431689)
-
(1997)
Emerging Infectious Diseases
, vol.3
, Issue.3
, pp. 295-302
-
-
Roberts, D.R.1
Laughlin, L.L.2
Hsheih, P.3
Legters, L.J.4
-
29
-
-
33750437374
-
Clines, clusters, and the effect of study design on the inference of human population structure
-
Rosenberg NA, Mahajan S, Ramachandran S, Zhao C, Pritchard JK, Feldman MW. 2005. Clines, clusters, and the effect of study design on the inference of human population structure. PLoS Genet. 1:e70.
-
(2005)
PLoS Genet
, vol.1
-
-
Rosenberg, N.A.1
Mahajan, S.2
Ramachandran, S.3
Zhao, C.4
Pritchard, J.K.5
Feldman, M.W.6
-
30
-
-
0041864234
-
Endemic malaria in the Peruvian Amazon region of Iquitos
-
(11 co-authors)
-
Roshanravan B, Kari E, Gilman RH, et al. (11 co-authors). 2003. Endemic malaria in the Peruvian Amazon region of Iquitos. Am J Trop Med Hyg. 69:45-52.
-
(2003)
Am J Trop Med Hyg
, vol.69
, pp. 45-52
-
-
Roshanravan, B.1
Kari, E.2
Gilman, R.H.3
-
31
-
-
0033016077
-
Semi-nested, multiplex polymerase chain reaction for detection of human malaria parasites and evidence of Plasmodium vivax infection in Equatorial Guinea
-
Rubio JM, Benito A, Roche J, Berzosa PJ, Garcia ML, Mico M, Edu M, Alvar J. 1999. Semi-nested, multiplex polymerase chain reaction for detection of human malaria parasites and evidence of Plasmodium vivax infection in Equatorial Guinea. Am J Trop Med Hyg. 60:183-187. (Pubitemid 29107099)
-
(1999)
American Journal of Tropical Medicine and Hygiene
, vol.60
, Issue.2
, pp. 183-187
-
-
Rubio, J.M.1
Benito, A.2
Roche, J.3
Berzosa, P.J.4
Garcia, M.L.5
Mico, M.6
Edu, M.7
Alvar, J.8
-
32
-
-
0033119186
-
Allelic recombination and linkage disequilibrium within Msp-1 of Plasmodium falciparum, the malignant human malaria parasite
-
DOI 10.1016/S0378-1119(99)00069-4, PII S0378111999000694
-
Sakihama N, Kimura M, Hirayama K, Kanda T, Na-Bangchang K, Jongwutiwes S, Conway D, Tanabe K. 1999. Allelic recombination and linkage disequilibrium within MSP-1 of Plasmodium falcipa-rum, the malignant human malaria parasite. Gene 230:47-54. (Pubitemid 29193194)
-
(1999)
Gene
, vol.230
, Issue.1
, pp. 47-54
-
-
Sakihama, N.1
Kimura, M.2
Hirayama, K.3
Kanda, T.4
Na-Bangchang, K.5
Jongwutiwes, S.6
Conway, D.7
Tanabe, K.8
-
33
-
-
58149090121
-
Extremely low genetic diversity in the endangered Hawaiian Monk Seal (Monachus schauinslandi)
-
Schultz JK, Baker JD, Toonen RJ, Bowen BW. 2009. Extremely low genetic diversity in the endangered Hawaiian Monk Seal (Monachus schauinslandi). J Hered. 100:25-33.
-
(2009)
J Hered
, vol.100
, pp. 25-33
-
-
Schultz, J.K.1
Baker, J.D.2
Toonen, R.J.3
Bowen, B.W.4
-
34
-
-
0028816747
-
A measure of population subdivision based on microsatellite allele frequencies
-
Slatkin M. 1995. A measure of population subdivision based on microsatellite allele frequencies. Genetics 139:457-462.
-
(1995)
Genetics
, vol.139
, pp. 457-462
-
-
Slatkin, M.1
-
35
-
-
73949103805
-
Plasmodium falciparum and Plasmodium vivax infections in the Peruvian Amazon: Propagation of complex, multiple allele-type infections without super-infection
-
Sutton PL, Neyra V, Hernandez JN, Branch OH. 2009. Plasmodium falciparum and Plasmodium vivax infections in the Peruvian Amazon: propagation of complex, multiple allele-type infections without super-infection. Am J Trop Med Hyg. 81:950-960.
-
(2009)
Am J Trop Med Hyg
, vol.81
, pp. 950-960
-
-
Sutton, P.L.1
Neyra, V.2
Hernandez, J.N.3
Branch, O.H.4
-
36
-
-
76749084451
-
The Plasmodium falciparum merozoite surface protein-1 19 KD antibody response in the Peruvian Amazon predominantly targets the non-allele specific, shared sites of this antigen
-
Sutton PL, Clark EH, Silva C, Branch OH. 2010. The Plasmodium falciparum merozoite surface protein-1 19 KD antibody response in the Peruvian Amazon predominantly targets the non-allele specific, shared sites of this antigen. Malar J. 9:3.
-
(2010)
Malar J
, vol.9
, pp. 3
-
-
Sutton, P.L.1
Clark, E.H.2
Silva, C.3
Branch, O.H.4
-
37
-
-
53349097807
-
Antibody response dynamics to the Plasmodium falciparum conserved vaccine candidate antigen, merozoite surface protein-1 C-terminal 19kD (MSP1-19kD), in Peruvians exposed to hypoendemic malaria transmission
-
Torres KJ, Clark EH, Hernandez JN, Soto-Cornejo KE, Gamboa D, Branch OH. 2008. Antibody response dynamics to the Plasmodium falciparum conserved vaccine candidate antigen, merozoite surface protein-1 C-terminal 19kD (MSP1-19kD), in Peruvians exposed to hypoendemic malaria transmission. Malar J. 7:173.
-
(2008)
Malar J
, vol.7
, pp. 173
-
-
Torres, K.J.1
Clark, E.H.2
Hernandez, J.N.3
Soto-Cornejo, K.E.4
Gamboa, D.5
Branch, O.H.6
-
38
-
-
0035811022
-
Evidence for clonal propagation in natural isolates of Plasmodium falciparum from Venezuela
-
DOI 10.1073/pnas.111144998
-
Urdaneta L, Lal A, Barnabé C, Oury B, Goldman I, Ayala FJ, Tibayrenc M. 2001. Evidence for clonal propagation in natural isolates of Plasmodium falciparum from Venezuela. Proc Natl Acad Sci USA. 98:6725-6729. (Pubitemid 32538284)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.12
, pp. 6725-6729
-
-
Urdaneta, L.1
Lal, A.2
Barnabe, C.3
Oury, B.4
Goldman, I.5
Ayala, F.J.6
Tibayrenc, M.7
-
39
-
-
3242671257
-
Pfcrt polymorphism and the spread of chloroquine resistance in Plasmodium falciparum populations across the Amazon Basin
-
DOI 10.1086/422006
-
Vieira PP, Ferreira MU, Alecrim MG, Alecrim WD, da Silva LH, Sihuincha MM, Joy DA, Mu J, Su XZ, Zalis MG. 2004. pfcrt polymorphism and the spread of chloroquine resistance in Plasmodium falciparum populations across the Amazon Basin. J Infect Dis. 190:417-424. (Pubitemid 38951985)
-
(2004)
Journal of Infectious Diseases
, vol.190
, Issue.2
, pp. 417-424
-
-
Vieira, P.P.1
Ferreira, M.U.2
Alecrim, M.D.G.3
Alecrim, W.D.4
Da Silva, L.H.P.5
Sihuincha, M.M.6
Joy, D.A.7
Mu, J.8
Su, X.-Z.9
Zalis, M.G.10
-
40
-
-
39049158778
-
Plasmodium falciparum genetic diversity in Western Kenya highlands
-
Zhong D, Afrane Y, Githeko A, Yang Z, Cui L, Menge DM, Temu EA, Yan G. 2007. Plasmodium falciparum genetic diversity in western Kenya highlands. Am J Trop Med Hyg. 77:1043-1050. (Pubitemid 351837790)
-
(2007)
American Journal of Tropical Medicine and Hygiene
, vol.77
, Issue.6
, pp. 1043-1050
-
-
Zhong, D.1
Afrane, Y.2
Githeko, A.3
Yang, Z.4
Cui, L.5
Menge, D.M.6
Temu, E.A.7
Yan, G.8
|