Genotyping of Saccharomyces cerevisiae strains by interdelta sequence typing using automated microfluidics

Electrophoresis

Volumn 32, Issue 12, 2011, Pages 1447-1455

  Franco Duarte, Ricardo ^a   Mendes, Inês ^a   Gomes, Ana Catarina ^b   Santos, Manuel A S ^b,c   de Sousa, Bruno ^d   Schuller, Dorit ^a  

^a UNIVERSITY OF MINHO   (Portugal)

^b Biocant Biotechnology Innovation Center   (Portugal)

^c UNIVERSITY OF AVEIRO   (Portugal)

^d INSTITUTO DE HIGIENE E MEDICINA TROPICAL   (Portugal)

Author keywords

Capillary electrophoresis; Interdelta sequences; Non parametric methods; Saccharomyces cerevisiae

Indexed keywords

CAPILLARY ELECTROPHORESIS; DNA; MICROFLUIDICS; THERMAL CYCLING;

DNA POLYMERASE; GENOMIC SEQUENCE; GENOTYPING; INTERDELTUM SEQUENCE; NONPARAMETRIC METHODS; RELIABLE METHODS; REPRODUCIBILITIES; RETROTRANSPOSON; SACCHAROMYCES CEREVISIAE STRAINS; THERMAL-CYCLER;

YEAST;

DNA POLYMERASE;

ARTICLE; CONTROLLED STUDY; FUNGAL STRAIN; GENOTYPE; MICROFLUIDICS; NONHUMAN; POLYMERASE CHAIN REACTION; REPRODUCIBILITY; SACCHAROMYCES CEREVISIAE; SEQUENCE ANALYSIS;

EID: 79959411463     PISSN: 01730835     EISSN: 15222683     Source Type: Journal    
DOI: 10.1002/elps.201000640     Document Type: Article

References (41)

1. Aucott, J. N., Fayen, J., Grossnicklas, H., Morrissey, A., Lederman, M. M., Salata, R. A., Rev. Infect. Dis. 1990, 12, 406-411.
2. Hazen, K. C., Clin. Microbiol. Rev. 1995, 8, 462-478.
3. Blondin, B., Vezinhet, F., Revue Française d' Oenologie 1988, 28, 7-11.
4. Carle, G. F., Olson, M. V., Proc. Natl. Acad. Sci USA 1985, 82, 3756-3760.
5. Dubordieu, D., Sokol, A., Zucca, J., Thalouarn, P., Datte, A., Aigle, M., Connais Vigne Vin 1984, 21, 267-278.
6. Lopez, V., Querol, A., Ramon, D., Fernandez-Espinar, M. T., Int. J. Food Microbiol. 2001, 68, 75-81.
7. Querol, A., Barrio, E., Huerta, T., Ramon, D., Appl. Environ. Microbiol. 1992, 58, 2948-2953.
8. Vezinhet, F., Blondin, B., Hallet, J. N., Appl. Microbiol. Biotechnol. 1990, 32, 658-671.
9. Corte, L., Lattanzi, M., Buzzini, P., Bolano, A., Fatichenti, F., Cardinali, G., J. Appl. Microbiol. 2005, 99, 609-617.
10. Baleiras Couto, M. M., Eijsma, B., Hofstra, H., Huis in't Veld, J. H., van der Vossen, J. M., Appl. Environ. Microbiol. 1996, 62, 41-46.
11. Ayoub, M. J., Legras, J. L., Saliba, R., Gaillardin, C., J. Appl. Microbiol. 2006, 100, 699-711.
12. Hennequin, C., Thierry, A., Richard, G. F., Lecointre, G., Nguyen, H. V., Gaillardin, C., Dujon, B., J. Clin. Microbiol. 2001, 39, 551-559.
13. Legras, J. L., Ruh, O., Merdinoglu, D., Karst, F., Int. J. Food Microbiol. 2005, 102, 73-83.
14. Perez, M. A., Gallego, F. J., Martinez, I., Hidalgo, P., Lett. Appl. Microbiol. 2001, 33, 461-466.
15. Martorell, P., Querol, A., Fernandez-Espinar, M. T., Appl. Environ. Microbiol. 2005, 71, 6823-6830.
16. Hierro, N., Esteve-Zarzoso, B., Gonzalez, A., Mas, A., Guillamon, J. M., Appl. Environ. Microbiol. 2006, 72, 7148-7155.
17. Legras, J. L., Karst, F., FEMS Microbiol. Lett. 2003, 221, 249-255.
18. Ness, F., Lavalee, F., Dubordieu, D., Aigle, M., Dulau, L., J. Sci. Food Agric. 1993, 62, 89-94.
19. Schuller, D., Valero, E., Dequin, S., Casal, M., FEMS Microbiol. Lett. 2004, 231, 19-26.
20. Fernandez-Espinar, M. T., Lopez, V., Ramon, D., Bartra, E., Querol, A., Int. J. Food Microbiol. 2001, 70, 1-10.
21. Ciani, M., Mannazzu, I., Marinangeli, P., Clementi, F., Martini, A., Ant Leeuwenhoek 2004, 85, 159-164.
22. Lavallée, F., Salvas, Y., Lamy, S., Thomas, D. Y., Degre, R., Dulau, L., Am. J. Enol. Viticult. 1994, 45, 86-91.
23. Pramateftaki, P. V., Lanaridis, P., Typas, M. A., J. Appl. Microbiol. 2000, 89, 236-248.
24. Lopes, C. A., van Broock, M., Querol, A., Caballero, A. C., J. Appl. Microbiol. 2002, 93, 608-615.
25. Cappello, M. S., Bleve, G., Grieco, F., Dellaglio, F., Zacheo, G., J. Appl. Microbiol. 2004, 97, 1274-1280.
26. Demuyter, C., Lollier, M., Legras, J. L., Le Jeune, C., J. Appl. Microbiol. 2004, 97, 1140-1148.
27. Terefework, Z., Kaijalainen, S., Lindstrom, K., J. Biotechnol. 2001, 91, 169-180.
28. Papa, R., Troggio, M., Ajmone-Marsan, P., Nonnis Marzano, F., J. Anim. Breed. Genet. 2005, 122, 62-68.
29. Tristezza, M., Gerardi, C., Logrieco, A., Grieco, F., J. Microbiol. Methods 2009, 78, 286-291.
30. Vilioen, G. J., Nel, L. H., Crowther, J. R., Molecular Diagnostic PCR Handbook, Springer, Dordrecht, The Netherlands 2005.
31. Tudos, A. J., Besselink, G. A. J., Schasfoort, R. B. M., Lab Chip 2001, 1, 83-95.
32. Verpoorte, E., Electrophoresis 2002, 23, 677-712.
33. Ryley, J., Pereira-Smith, O. M., Yeast 2006, 23, 1065-1073.
34. Whitesides, G. M., Nature 2006, 442, 368-373.
35. Lion, N., Reymond, F., Girault, H. H., Rossier, J. S., Curr. Opin. Biotechnol. 2004, 15, 31-37.
36. Mark, D., Haeberle, S., Roth, G., von Stetten, F., Zengerle, R., Chem. Soc. Rev. 2010, 39, 1153-1182.
37. Schuller, D., Casal, M., Ant Leeuwenhoek 2007.
38. Aires-de-Sousa, J., Aires-de-Sousa, L., Bioinformatics 2003, 19, 30-36.
39. Conover, W. J., Iman, R. L., Technical Report, LA-7677-MS. Los Alamos Scientific Laboratory 1979.
40. Fernandez-Gonzalez, M., Espinosa, J. C., Ubeda, J. F., Briones, A. I., Syst. Appl. Microbiol. 2001, 24, 634-638.
41. Masneuf, I., Dubourdieu, D., Journal International Des Sciences De La Vigne Et Du Vin 1994, 28, 153-160.