-
1
-
-
77950017573
-
Sequence-based prediction of protein-protein interactions by means of rotation forest and autocorrelation descriptor
-
Xia, J. F.; Han, K.; Huang, D. S. Sequence-based prediction of protein-protein interactions by means of rotation forest and autocorrelation descriptor. Protein Pept. Lett., 2010, 17(1), 137-145.
-
(2010)
Protein Pept Lett.
, vol.17
, Issue.1
, pp. 137-145
-
-
Xia, J.F.1
Han, K.2
Huang, D.S.3
-
2
-
-
77949945267
-
A novel approach to predict protein-protein interactions related to alzheimers disease based on complex network
-
Yang, J.; Jiang, X. F. A novel approach to predict protein-protein interactions related to alzheimers disease based on complex network. Protein Pept. Lett., 2010, 17(3), 356-366.
-
(2010)
Protein Pept Lett.
, vol.17
, Issue.3
, pp. 356-366
-
-
Yang, J.1
Jiang, X.F.2
-
3
-
-
79251604991
-
Predicting functions of proteins in mouse based on weighted protein-protein interaction network and protein hybrid properties
-
Hu, L.; Huang, T.; Shi, X.; Lu, W. C.; Cai, Y. D.; Chou, K. C.; Ouzounis, C. Predicting functions of proteins in mouse based on weighted protein-protein interaction network and protein hybrid properties. PloS one, 2011, 6(1), e14556.
-
(2011)
PloS One
, vol.6
, Issue.1
-
-
Hu, L.1
Huang, T.2
Shi, X.3
Lu, W.C.4
Cai, Y.D.5
Chou, K.C.6
Ouzounis, C.7
-
4
-
-
32344433486
-
Predicting Protein- Protein interactions from sequences in a hybridization space
-
Chou, K. C.; Cai, Y. D. Predicting Protein- Protein interactions from sequences in a hybridization space. J. Proteome Res., 2006, 5(2), 316-322.
-
(2006)
J Proteome Res.
, vol.5
, Issue.2
, pp. 316-322
-
-
Chou, K.C.1
Cai, Y.D.2
-
5
-
-
78650227361
-
Identifying the hub proteins from complicated membrane protein network systems
-
Shen, Y. Z.; Ding, Y. S.; Gu, Q. A.; Chou, K. C. Identifying the hub proteins from complicated membrane protein network systems. Med. Chem., 2010, 6(3), 165-173.
-
(2010)
Med Chem.
, vol.6
, Issue.3
, pp. 165-173
-
-
Shen, Y.Z.1
Ding, Y.S.2
Gu, Q.A.3
Chou, K.C.4
-
6
-
-
44349159560
-
Using support vector machine combined with auto covariance to predict proteinprotein interactions from protein sequences
-
Guo, Y. Z.; Yu, L. Z.; Wen, Z. N.; Li, M. L. Using support vector machine combined with auto covariance to predict proteinprotein interactions from protein sequences. Nucleic Acids Res., 2008, 36(9), 3025-3030.
-
(2008)
Nucleic Acids Res.
, vol.36
, Issue.9
, pp. 3025-3030
-
-
Guo, Y.Z.1
Yu, L.Z.2
Wen, Z.N.3
Li, M.L.4
-
7
-
-
34248371273
-
Predicting protein-protein interactions based only on sequences information
-
DOI 10.1073/pnas.0607879104
-
Shen, J. W.; Zhang, J.; Luo, X. M.; Zhu, W. L.; Yu, K. Q.; Chen, K. X.; Li, Y. X.; Jiang, H. L. Predictina protein-protein interactions based only on sequences information. Proc. Nat. Acad. Sci.U.SA, 2007, 104(11), 4337-4341. (Pubitemid 47186227)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.11
, pp. 4337-4341
-
-
Shen, J.1
Zhang, J.2
Luo, X.3
Zhu, W.4
Yu, K.5
Chen, K.6
Li, Y.7
Jiang, H.8
-
8
-
-
78449307593
-
Prediction of protein-protein interactions from protein sequence using local descriptors
-
Yang, L.; Xia, J. F.; Gui, J. Prediction of Protein-Protein Interactions from Protein Sequence Using Local Descriptors. Protein Pept. Lett., 2010, 17(9), 1085-1090.
-
(2010)
Protein Pept Lett.
, vol.17
, Issue.9
, pp. 1085-1090
-
-
Yang, L.1
Xia, J.F.2
Gui, J.3
-
9
-
-
77950017573
-
Sequence-based prediction of protein-protein interactions by means of rotation forest and autocorrelation descriptor
-
Xia, J. F.; Han, K.; Huang, D. S. Sequence-based prediction of protein-protein interactions by means of rotation forest and autocorrelation descriptor. Protein Pept. Lett., 2010, 17(1), 137-145.
-
(2010)
Protein Pept Lett.
, vol.17
, Issue.1
, pp. 137-145
-
-
Xia, J.F.1
Han, K.2
Huang, D.S.3
-
10
-
-
24044500970
-
Prediction of protein-protein interactions using distant conservation of sequence patterns and structure relationships
-
DOI 10.1093/bioinformatics/bti522
-
Espadaler, J.; Romero-Isart, O.; Jackson, R. M.; Oliva, B. Prediction of protein-protein interactions using distant conservation of sequence patterns and structure relationships. Bioinformatics, 2005, 21(16), 3360-3368. (Pubitemid 41222440)
-
(2005)
Bioinformatics
, vol.21
, Issue.16
, pp. 3360-3368
-
-
Espadaler, J.1
Romero-Isart, O.2
Jackson, R.M.3
Oliva, B.4
-
11
-
-
10244242604
-
POINT: A database for the prediction of protein-protein interactions based on the orthologous interactome
-
Huang, T. W.; Tien, A. C.; Lee, Y. C. G.; Huang, W. S.; Peng, C. L.; Tseng, H. H.; Kao, C. Y.; Huang, C. Y. F. POINT: a database for the prediction of protein-protein interactions based on the orthologous interactome. Bioinformatics, 2004, 20(17), 3273-3276.
-
(2004)
Bioinformatics
, vol.20
, Issue.17
, pp. 3273-3276
-
-
Huang, T.W.1
Tien, A.C.2
Lee, Y.C.G.3
Huang, W.S.4
Peng, C.L.5
Tseng, H.H.6
Kao, C.Y.7
Huang, C.Y.F.8
-
12
-
-
23144463510
-
PRISM: Protein interactions by structural matching
-
DOI 10.1093/nar/gki585
-
Ogmen, U.; Keskin, O.; Aytuna, A. S.; Nussinov, R.; Gursoy, A. PRISM: protein interactions by structural matching. Nucleic Acids Research, 2005, 33, W331-W336. (Pubitemid 44529938)
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.WEB. SERV. ISS.
-
-
Ogmen, U.1
Keskin, O.2
Aytuna, A.S.3
Nussinov, R.4
Gursoy, A.5
-
13
-
-
0037250158
-
InterPreTS: Protein Interaction Prediction through Tertiary Structure
-
DOI 10.1093/bioinformatics/19.1.161
-
Aloy, P.; Russell, R. B. InterPreTS: protein Interaction Prediction through Tertiary Structure. Bioinformatics, 2003, 19(1), 161-162. (Pubitemid 36150198)
-
(2003)
Bioinformatics
, vol.19
, Issue.1
, pp. 161-162
-
-
Aloy, P.1
Russell, R.B.2
-
14
-
-
0037197902
-
Interrogating protein interaction networks through structural biology
-
DOI 10.1073/pnas.092147999
-
Aloy, P.; Russell, R. B. Interrogating protein interaction networks through structural biology. Proc. Nat. Acad. Sci.U.S.A, 2002, 99(9), 5896-5901. (Pubitemid 34493236)
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.9
, pp. 5896-5901
-
-
Aloy, P.1
Russell, R.B.2
-
15
-
-
13444301479
-
PreSPI: A domain combination based prediction system for protein-protein interaction
-
Han, D. S.; Kim, H. S.; Jang, W. H.; Lee, S. D.; Suh, J. K. PreSPI: a domain combination based prediction system for protein-protein interaction. Nucleic Acids Res., 2004, 32(21), 6312-6320.
-
(2004)
Nucleic Acids Res.
, vol.32
, Issue.21
, pp. 6312-6320
-
-
Han, D.S.1
Kim, H.S.2
Jang, W.H.3
Lee, S.D.4
Suh, J.K.5
-
16
-
-
33747837195
-
A lockand-key model for protein-protein interactions
-
Morrison, J. L.; Breitling, R.; Higham, D. J.; Gilbert, D. R. A lockand-key model for protein-protein interactions. Bioinformatics, 2006, 22(16), 2012-2019.
-
(2006)
Bioinformatics
, vol.22
, Issue.16
, pp. 2012-2019
-
-
Morrison, J.L.1
Breitling, R.2
Higham, D.J.3
Gilbert, D.R.4
-
17
-
-
34447512754
-
A domain-based approach to predict proteinprotein interactions
-
Singhal, M.; Resat, H. A domain-based approach to predict proteinprotein interactions. BMC Bioinformatics, 2007, 8(1), 199.
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.1
, pp. 199
-
-
Singhal, M.1
Resat, H.2
-
18
-
-
0035943340
-
Correlated sequence-signatures as markers of protein-protein interaction
-
DOI 10.1006/jmbi.2001.4920
-
Sprinzak, E.; Margalit, H. Correlated sequence-signatures as markers of protein-protein interaction. J.Mol. Biol., 2001, 311(4), 681-692. (Pubitemid 32803728)
-
(2001)
Journal of Molecular Biology
, vol.311
, Issue.4
, pp. 681-692
-
-
Sprinzak, E.1
Margalit, H.2
-
19
-
-
78650141103
-
Inferring protein-protein interactions using a hybrid genetic algorithm/support vector machine method
-
Wang, B.; Chen, P.; Zhang, J.; Zhao, G. X.; Zhang, X. A. Inferring protein-protein interactions using a hybrid genetic algorithm/support vector machine method. Protein Pept. Lett., 2010, 17(9), 1079-1084.
-
(2010)
Protein Pept Lett.
, vol.17
, Issue.9
, pp. 1079-1084
-
-
Wang, B.1
Chen, P.2
Zhang, J.3
Zhao, G.X.4
Zhang, X.A.5
-
20
-
-
70349613231
-
FoldRate: A web-server for predicting protein folding rates from primary sequence
-
Chou, K. C.; Shen, H. B. FoldRate: A web-server for predicting protein folding rates from primary sequence. Open Bioinform. J., 2009, 3, 31-50.
-
(2009)
Open Bioinform. J.
, vol.3
, pp. 31-50
-
-
Chou, K.C.1
Shen, H.B.2
-
21
-
-
0025021607
-
Applications of graph theory to enzyme kinetics and protein folding kinetics. Steady and non-steady state systems
-
Chou, K. C. Applications of graph theory to enzyme kinetics and protein folding kinetics. Steady and non-steady state systems. Biophys. Chem., 1990, 35(1), 1-24.
-
(1990)
Biophys Chem.
, vol.35
, Issue.1
, pp. 1-24
-
-
Chou, K.C.1
-
22
-
-
69949110263
-
Prediction of protein folding rates from primary sequence by fusing multiple sequential features
-
Shen, H. B.; Song, J. N.; Chou, K. C. Prediction of protein folding rates from primary sequence by fusing multiple sequential features. J. Sci. Eng., 2009, 2(3), 136-143.
-
(2009)
J. Sci Eng.
, vol.2
, Issue.3
, pp. 136-143
-
-
Shen, H.B.1
Song, J.N.2
Chou, K.C.3
-
23
-
-
0027181846
-
The quinoline U-78036 is a potent inhibitor of HIV-1 reverse transcriptase
-
Althaus, I. W.; Gonzales, A. J.; Chou, J. J.; Romero, D. L.; Deibel, M. R.; Chou, K. C.; Kezdy, F. J.; Resnick, L.; Busso, M. E.; So, A. G. The quinoline U-78036 is a potent inhibitor of HIV-1 reverse transcriptase. J. Biol. Chem., 1993, 268(20), 14875-14880. (Pubitemid 23206633)
-
(1993)
Journal of Biological Chemistry
, vol.268
, Issue.20
, pp. 14875-14880
-
-
Althaus, I.W.1
Gonzales, A.J.2
Chou, J.J.3
Romero, D.L.4
Deibel, M.R.5
Chou -, K.C.6
Kezdy, F.J.7
Resnick, L.8
Busso, M.E.9
So, A.G.10
Downey, K.M.11
Thomas, R.C.12
Aristoff, P.A.13
Tarpley, W.G.14
Reusser, F.15
-
24
-
-
0027236748
-
Kinetic studies with the non-nucleoside HIV-1 reverse transcriptase inhibitor U-88204E
-
Althaus, I. W.; Chou, J. J.; Gonzales, A. J.; Deibel, M. R.; Chou, K. C.; Kezdy, F. J.; Romero, D. L.; Palmer, J. R.; Thomas, R. C.; Aristoff, P. A. Kinetic studies with the non-nucleoside HIV-1 reverse transcriptase inhibitor U-88204E. Biochemistry, 1993, 32(26), 6548-6554. (Pubitemid 23217124)
-
(1993)
Biochemistry
, vol.32
, Issue.26
, pp. 6548-6554
-
-
Althaus, I.W.1
Chou, J.J.2
Gonzales, A.J.3
Deibel, M.R.4
Chou, K.-C.5
Kezdy, F.J.6
Romero, D.L.7
Palmer, J.R.8
Thomas, R.C.9
Aristoff, P.A.10
Tarpley, W.G.11
Reusser, F.12
-
25
-
-
0027462167
-
Steady-state kinetic studies with the non-nucleoside HIV-1 reverse transcriptase inhibitor U-87201E
-
Althaus, I. W.; Chou, J. J.; Gonzales, A. J.; Deibel, M. R.; Chou, K. C.; Kezdy, F. J.; Romero, D. L.; Aristoff, P. A.; Tarpley, W. G.; Reusser, F. Steady-state kinetic studies with the non-nucleoside HIV-1 reverse transcriptase inhibitor U-87201E. J. Biol. Chem., 1993, 268(9), 6119-6124. (Pubitemid 23099297)
-
(1993)
Journal of Biological Chemistry
, vol.268
, Issue.9
, pp. 6119-6124
-
-
Althaus, I.W.1
Chou, J.J.2
Gonzales, A.J.3
Deibel, M.R.4
Chou, K.-C.5
Kezdy, F.J.6
Romero, D.L.7
Aristoff, P.A.8
Tarpley, W.G.9
Reusser, F.10
-
26
-
-
0343315943
-
Graph theory of enzyme kinetics: 1. Steady-state reaction system
-
Chou, K. C.; Jiang, S. P.; Liu, W. M.; Fee, C. H. Graph theory of enzyme kinetics: 1. Steady-state reaction system. Scientia Sinica, 1979, 22, 341-358.
-
(1979)
Scientia Sinica
, vol.22
, pp. 341-358
-
-
Chou, K.C.1
Jiang, S.P.2
Liu, W.M.3
Fee, C.H.4
-
27
-
-
0019021450
-
Graphical rules for enzyme-catalysed rate laws
-
Chou, K. C.; Forsen, S. Graphical rules for enzyme-catalysed rate laws. Biochemical Journal, 1980, 187(3), 829.
-
(1980)
Biochemical Journal
, vol.187
, Issue.3
, pp. 829
-
-
Chou, K.C.1
Forsen, S.2
-
28
-
-
0019885786
-
Two new schematic rules for rate laws of enzymecatalysed reactions
-
Chou, K. C. Two new schematic rules for rate laws of enzymecatalysed reactions. J. Theor. Biol., 1981, 89(4), 581-592.
-
(1981)
J. Theor Biol.
, vol.89
, Issue.4
, pp. 581-592
-
-
Chou, K.C.1
-
29
-
-
0021764092
-
An extension of Chou's graphic rules for deriving enzyme kinetic equations to systems involving parallel reaction pathways
-
Zhou, G. P.; Deng, M. H. An extension of Chou's graphic rules for deriving enzyme kinetic equations to systems involving parallel reaction pathways. Biochemical Journal, 1984, 222(1), 169.
-
(1984)
Biochemical Journal
, vol.222
, Issue.1
, pp. 169
-
-
Zhou, G.P.1
Deng, M.H.2
-
30
-
-
0021800102
-
Microcomputer tools for steady-state enzyme kinetics
-
Myers, D.; Palmer, G. Microcomputer tools for steady-state enzyme kinetics. Comput. Appl. Biosci., 1985, 1(2), 105-110. (Pubitemid 15074159)
-
(1985)
Computer Applications in the Biosciences
, vol.1
, Issue.2
, pp. 105-110
-
-
Myers, D.1
Palmer, G.2
-
31
-
-
0024971003
-
Graphic rules in steady and non-steady enzyme kinetics
-
Chou, K. C. Graphic rules in steady and non-steady enzyme kinetics. J. Biol. Chem., 1989, 264(20), 12074-12079.
-
(1989)
J. Biol Chem.
, vol.264
, Issue.20
, pp. 12074-12079
-
-
Chou, K.C.1
-
32
-
-
42149097173
-
Kinetic plasticity and the determination of product ratios for kinetic schemes leading to multiple products without rate laws - New methods based on directed graphs
-
DOI 10.1139/V08-020
-
Andraos, J. Kinetic plasticity and the determination of product ratios for kinetic schemes leading to multiple products without rate laws-New methods based on directed graphs. Canadian Journal of Chemistry-Revue Canadienne De Chimie, 2008, 86(4), 342-357. (Pubitemid 351536311)
-
(2008)
Canadian Journal of Chemistry
, vol.86
, Issue.4
, pp. 342-357
-
-
Andraos, J.1
-
33
-
-
77952868004
-
Graphic rule for drug metabolism systems
-
Chou, K. C. Graphic Rule for Drug Metabolism Systems. Curr. Drug Metab., 2010, 11(4), 369-378.
-
(2010)
Curr Drug Metab.
, vol.11
, Issue.4
, pp. 369-378
-
-
Chou, K.C.1
-
34
-
-
0028071544
-
Steady-state inhibition kinetics of processive nucleic acid polymerases and nucleases
-
Chou, K. C. K., F. J.; Reusser, F. Review: Steady-state inhibition kinetics of processive nucleic acid polymerases and nucleases. Analytical Biochemistry, 1994, 221, 217-230.
-
(1994)
Analytical Biochemistry
, vol.221
, pp. 217-230
-
-
Chou, K.C.K.J.F.1
Review, R.F.2
-
35
-
-
0021755192
-
Cellular automation as models of complexity
-
Wolfram, S. Cellular automation as models of complexity. Nature, 1984, 311, 419-424.
-
(1984)
Nature
, vol.311
, pp. 419-424
-
-
Wolfram, S.1
-
36
-
-
33344460430
-
A probability cellular automaton model for hepatitis B viral infections
-
DOI 10.1016/j.bbrc.2006.01.166, PII S0006291X0600249X
-
Xiao, X.; Shao, S. H.; Chou, K. C. A probability cellular automaton model for hepatitis B viral infections. Biochem. Biophys. Res. Commun., 2006, 342(2), 605-610. (Pubitemid 43289033)
-
(2006)
Biochemical and Biophysical Research Communications
, vol.342
, Issue.2
, pp. 605-610
-
-
Xiao, X.1
Shao, S.-H.2
Chou, K.-C.3
-
37
-
-
20344364176
-
An application of gene comparative image for predicting the effect on replication ratio by HBV virus gene missense mutation
-
DOI 10.1016/j.jtbi.2005.02.008, PII S0022519305000688
-
Xiao, X.; Shao, S. H.; Ding, Y. S.; Huang, Z. D.; Chen, X. J.; Chou, K. C. An application of gene comparative image for predicting the effect on replication ratio by HBV virus gene missense mutation. J. Theor. Biol., 2005, 235(4), 555-565. (Pubitemid 40780944)
-
(2005)
Journal of Theoretical Biology
, vol.235
, Issue.4
, pp. 555-565
-
-
Xiao, X.1
Shao, S.2
Ding, Y.3
Huang, Z.4
Chen, X.5
Chou, K.-C.6
-
38
-
-
15244357858
-
Using cellular automata to generate image representation for biological sequences
-
DOI 10.1007/s00726-004-0154-9
-
Xiao, X.; Shao, S.; Ding, Y.; Huang, Z.; Chen, X.; Chou, K. C. Using cellular automata to generate image representation for biological sequences. Amino Acids, 2005, 28(1), 29-35. (Pubitemid 40385391)
-
(2005)
Amino Acids
, vol.28
, Issue.1
, pp. 29-35
-
-
Xiao, X.1
Shao, S.2
Ding, Y.3
Huang, Z.4
Chen, X.5
Chou, K.-C.6
-
39
-
-
64749096548
-
GPCR - CA: A cellular automaton image approach for predicting G-protein-coupled receptor functional classes
-
Xiao, X.; Wang, P.; Chou, K. C. GPCR - CA: A cellular automaton image approach for predicting G-protein-coupled receptor functional classes. J. Comput. Chem., 2009, 30(9), 1414-1423.
-
(2009)
J. Comput. Chem.
, vol.30
, Issue.9
, pp. 1414-1423
-
-
Xiao, X.1
Wang, P.2
Chou, K.C.3
-
40
-
-
32944461574
-
Using cellular automata images and pseudo amino acid composition to predict protein subcellular location
-
DOI 10.1007/s00726-005-0225-6
-
Xiao, X.; Shao, S.; Ding, Y.; Huang, Z.; Chou, K. C. Using cellular automata images and pseudo amino acid composition to predict protein subcellular location. Amino Acids, 2006, 30(1), 49-54. (Pubitemid 43261126)
-
(2006)
Amino Acids
, vol.30
, Issue.1
, pp. 49-54
-
-
Xiao, X.1
Shao, S.2
Ding, Y.3
Huang, Z.4
Chou, K.-C.5
-
41
-
-
35548967965
-
Digital coding of amino acids based on hydrophobic index
-
DOI 10.2174/092986607782110293
-
Xiao, X.; Chou, K. C. Digital coding of amino acids based on hydrophobic index. Protein Pept. Lett., 2007, 14(9), 871-875. (Pubitemid 350013824)
-
(2007)
Protein and Peptide Letters
, vol.14
, Issue.9
, pp. 871-875
-
-
Xiao, X.1
Chou, K.-C.2
-
42
-
-
79953308534
-
Quat-2L: A web-server for predicting protein quaternary structural attributes
-
Xiao, X.; Wang, P.; Chou, K. C. Quat-2L: a web-server for predicting protein quaternary structural attributes. Mol. Divers., 15(1), 2010, 1-7.
-
(2010)
Mol. Divers.
, vol.15
, Issue.1
, pp. 1-7
-
-
Xiao, X.1
Wang, P.2
Chou, K.C.3
-
43
-
-
43049151837
-
Hierarchical structure and the prediction of missing links in networks
-
DOI 10.1038/nature06830, PII NATURE06830
-
Clauset, A.; Moore, C.; Newman, M. E. J. Hierarchical structure and the prediction of missing links in networks. Nature, 2008, 453(7191), 98-101. (Pubitemid 351630323)
-
(2008)
Nature
, vol.453
, Issue.7191
, pp. 98-101
-
-
Clauset, A.1
Moore, C.2
Newman, M.E.J.3
-
44
-
-
76049100050
-
Missing and spurious interactions and the reconstruction of complex networks
-
Guimera, R.; Sales-Pardo, M. Missing and spurious interactions and the reconstruction of complex networks. Proc. Nat. Acad. Sci. U.S.A., 2009, 106(52), 22073-22078.
-
(2009)
Proc. Nat. Acad. Sci. U.S.A.
, vol.106
, Issue.52
, pp. 22073-22078
-
-
Guimera, R.1
Sales-Pardo, M.2
-
45
-
-
79051470531
-
Link prediction based on local random walk
-
Liu, W. P.; Lu, L. Y. Link prediction based on local random walk. Europhysics Letters, 2010, 89(5),58007.
-
(2010)
Europhysics Letters
, vol.89
, Issue.5
, pp. 58007
-
-
Liu, W.P.1
Lu, L.Y.2
-
46
-
-
79951518208
-
Some remarks on protein attribute prediction and pseudo amino acid composition
-
Chou, K. C. Some remarks on protein attribute prediction and pseudo amino acid composition. J. Theor. Biol., 2011, 273, 236-247.
-
(2011)
J. Theor Biol.
, vol.273
, pp. 236-247
-
-
Chou, K.C.1
-
47
-
-
0036088133
-
DIP, the Database of Interacting Proteins: A research tool for studying cellular networks of protein interactions
-
Xenarios, I.; Salwinski, L.; Duan, X. Q. J.; Higney, P.; Kim, S. M.; Eisenberg, D. DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions. Nucleic Acids Res., 2002, 30(1), 303-305. (Pubitemid 34679570)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.1
, pp. 303-305
-
-
Xenarios, I.1
Salwinski, L.2
Duan, X.J.3
Higney, P.4
Kim, S.-M.5
Eisenberg, D.6
-
48
-
-
0036580169
-
Protein interactions-Two methods for assessment of the reliability of high throughput observations
-
Deane, C. M.; Salwinski, L.; Xenarios, I.; Eisenberg, D. Protein interactions-Two methods for assessment of the reliability of high throughput observations. Molecular & Cellular Proteomics, 2002, 1(5), 349-356.
-
(2002)
Molecular & Cellular Proteomics
, vol.1
, Issue.5
, pp. 349-356
-
-
Deane, C.M.1
Salwinski, L.2
Xenarios, I.3
Eisenberg, D.4
-
49
-
-
79959400128
-
Complex tree: The basic framework of protein-protein interaction networks
-
Ma, D. C.; Diao, Y. B.; Li, Y. Z.; Guo, Y. Z.; Wu, J.; Li, M. L. Complex tree: the basic framework of protein-protein interaction networks. Natural Science, 2010, 2(9), 998-1004.
-
(2010)
Natural Science
, vol.2
, Issue.9
, pp. 998-1004
-
-
Ma, D.C.1
Diao, Y.B.2
Li, Y.Z.3
Guo, Y.Z.4
Wu, J.5
Li, M.L.6
-
50
-
-
35248813431
-
Component sizes in networks with arbitrary degree distributions
-
Newman, M. E. J. Component sizes in networks with arbitrary degree distributions. Physical Review E, 2007, 76(4), 45101.
-
(2007)
Physical Review e
, vol.76
, Issue.4
, pp. 45101
-
-
Newman, M.E.J.1
-
51
-
-
34548606295
-
Recent progress in protein subcellular location prediction
-
Chou, K. C.; Shen, H. B. Recent progress in protein subcellular location prediction. Anal.Biochem., 2007, 370(1), 1-16.
-
(2007)
Anal.Biochem.
, vol.370
, Issue.1
, pp. 1-16
-
-
Chou, K.C.1
Shen, H.B.2
-
52
-
-
77953298113
-
A new method for predicting the subcellular localization of eukaryotic proteins with both single and multiple sites: Euk-mPLoc 2.0
-
Chou, K. C.; Shen, H. B. A new method for predicting the subcellular localization of eukaryotic proteins with both single and multiple sites: Euk-mPLoc 2.0. PloS one, 2010, 5(4), e9931.
-
(2010)
PloS One
, vol.5
, Issue.4
-
-
Chou, K.C.1
Shen, H.B.2
-
53
-
-
77956199192
-
Plant-mPLoc: A top-down strategy to augment the power for predicting plant protein subcellular localization
-
Chou, K. C.; Shen, H. B. Plant-mPLoc: A top-down strategy to augment the power for predicting plant protein subcellular localization. PLoS one, 2010, 5, e11335.
-
(2010)
PLoS One
, vol.5
-
-
Chou, K.C.1
Shen, H.B.2
-
54
-
-
0038519321
-
Contribution of hydrophobic interactions to the stability of the globular conformation of proteins
-
Tanford, C. Contribution of hydrophobic interactions to the stability of the globular conformation of proteins. J. Am. Chem. Soc., 1962, 84(22), 4240-4247.
-
(1962)
J. Am. Chem Soc.
, vol.84
, Issue.22
, pp. 4240-4247
-
-
Tanford, C.1
-
55
-
-
0000448982
-
Prediction of protein antigenic determinants from amino acid sequences
-
DOI 10.1073/pnas.78.6.3824
-
Hopp, T. P.; Woods, K. R. Prediction of protein antigenic determinants from amino acid sequences. Proc. Nat. Acad. Sci.U.SA, 1981, 78(6), 3824-3828. (Pubitemid 11060471)
-
(1981)
Proceedings of the National Academy of Sciences of the United States of America
, vol.78
, Issue.6
, pp. 3824-3828
-
-
Hopp, T.P.1
Woods, K.R.2
-
56
-
-
0018800241
-
Local interactions as a structure determinant for protein molecules: 3
-
Krigbaum, W. R.; Komoriya, A. Local interactions as a structure determinant for protein molecules: 3. Biochim. Biophys. Acta, 1979, 576(1), 229-246.
-
(1979)
Biochim. Biophys Acta
, vol.576
, Issue.1
, pp. 229-246
-
-
Krigbaum, W.R.1
Komoriya, A.2
-
57
-
-
0016197604
-
Amino acid difference formula to help explain protein evolution
-
Grantham, R. Amino acid difference formula to help explain protein evolution. Science, 1974, 185, 862-864.
-
(1974)
Science
, vol.185
, pp. 862-864
-
-
Grantham, R.1
-
58
-
-
0020371598
-
The structural dependence of amino acid hydrophobicity parameters
-
DOI 10.1016/0022-5193(82)90191-6
-
Charton, M.; Charton, B. I. The structural dependence of amino acid hydrophobicity parameters. J. Theor. Biol., 1982, 99(4), 629-644. (Pubitemid 13192303)
-
(1982)
Journal of Theoretical Biology
, vol.99
, Issue.4
, pp. 629-644
-
-
Charton, M.1
Charton, B.I.2
-
59
-
-
0022412192
-
Hydrophobicity of amino acid residues in globular proteins
-
Rose, G. D.; Geselowitz, A. R.; Lesser, G. J.; Lee, R. H.; Zehfus, M. H. Hydrophobicity of Amino Acid. Residues in Globular Proteins. Science, 1985, 229(4716), 834-838. (Pubitemid 16246583)
-
(1985)
Science
, vol.229
, Issue.4716
, pp. 834-838
-
-
Rose, G.D.1
Geselowitz, A.R.2
Lesser, G.J.3
-
60
-
-
33750452703
-
Genetic algorithm-based virtual screening of combinative mode for peptide/protein
-
Zhou, P.; Tian, F. F.; Li, B.; Wu, S. R.; Li, Z. L. Genetic algorithmbased virtual screening of combinative mode for peptide/protein. Acta Chimica Sinica, 2006, 64(7), 691-697. (Pubitemid 44655448)
-
(2006)
Acta Chimica Sinica
, vol.64
, Issue.7
, pp. 691-697
-
-
Zhou, P.1
Tian, F.-F.2
Li, B.3
Wu, S.-R.4
Li, Z.-L.5
-
61
-
-
78649326452
-
AFP-Pred: A random forest approach for predicting antifreeze proteins from sequence-derived properties
-
Kandaswamy, K. K.; Chou, K. C.; Martinetz, T.; Moller, S.; Suganthan, P. N.; Sridharan, S.; Pugalenthi, G. AFP-Pred: A random forest approach for predicting antifreeze proteins from sequence-derived properties. J. Theor. Biol., 2011, 270, 56-62.
-
(2011)
J. Theor Biol.
, vol.270
, pp. 56-62
-
-
Kandaswamy, K.K.1
Chou, K.C.2
Martinetz, T.3
Moller, S.4
Suganthan, P.N.5
Sridharan, S.6
Pugalenthi, G.7
-
62
-
-
77955198678
-
Knowledge-based computational mutagenesis for predicting the disease potential of human nonsynonymous single nucleotide polymorphisms
-
Masso, M.; Vaisman, II. Knowledge-based computational mutagenesis for predicting the disease potential of human nonsynonymous single nucleotide polymorphisms. J. Theor. Biol., 2010, 266(4), 560-568.
-
(2010)
J. Theor Biol.
, vol.266
, Issue.4
, pp. 560-568
-
-
Masso, M.1
Vaisman, I.I.2
-
63
-
-
0035478854
-
Random forests
-
DOI 10.1023/A:1010933404324
-
Breiman, L. Random forests. Machine learning, 2001, 45(1), 5-32. (Pubitemid 32933532)
-
(2001)
Machine Learning
, vol.45
, Issue.1
, pp. 5-32
-
-
Breiman, L.1
-
64
-
-
0345040873
-
Classification and Regression by randomForest
-
Liaw, A.; Wiener, M. Classification and Regression by randomForest. R news, 2002, 2(3), 18-22.
-
(2002)
R News
, vol.2
, Issue.3
, pp. 18-22
-
-
Liaw, A.1
Wiener, M.2
-
65
-
-
39449105071
-
Cell-PLoc: A package of Web servers for predicting subcellular localization of proteins in various organisms
-
Chou, K. C.; Shen, H. B. Cell-PLoc: a package of Web servers for predicting subcellular localization of proteins in various organisms. Nature Protocols, 2008, 3(2), 153-162.
-
(2008)
Nature Protocols
, vol.3
, Issue.2
, pp. 153-162
-
-
Chou, K.C.1
Shen, H.B.2
-
66
-
-
78650746655
-
Cell-PLoc 2.0: An improved package of web-servers for predicting subcellular localization of proteins in various organisms
-
Chou, K. C.; Shen, H. B. Cell-PLoc 2.0: an improved package of web-servers for predicting subcellular localization of proteins in various organisms. Natural Science, 2010, 109, 1090-1103. (openly accessible at http://www.scirp.org/journal/NS/
-
(2010)
Natural Science
, vol.109
, pp. 1090-1103
-
-
Chou, K.C.1
Shen, H.B.2
-
67
-
-
0029157083
-
Prediction of protein structural classes
-
Chou, K. C.; Zhang, C. T. Prediction of protein structural classes. Crit. Rev. Biochem. Mol. Biol., 1995, 30(4), 275-349.
-
(1995)
Crit. Rev. Biochem. Mol Biol.
, vol.30
, Issue.4
, pp. 275-349
-
-
Chou, K.C.1
Zhang, C.T.2
-
68
-
-
79951606205
-
GPCR-2L: Predicting G proteincoupled receptors and their types by hybridizing two different modes of pseudo amino acid compositions
-
Xiao, X.; Wang, P.; Chou, K. C. GPCR-2L: predicting G proteincoupled receptors and their types by hybridizing two different modes of pseudo amino acid compositions. Molecular Biosystems, 2011, 7, 911-919.
-
(2011)
Molecular Biosystems
, vol.7
, pp. 911-919
-
-
Xiao, X.1
Wang, P.2
Chou, K.C.3
-
69
-
-
78649458939
-
Analysis of protein pathway networks using hybrid properties
-
Chen, L.; Huang, T.; Shi, X. H.; Cai, Y. D.; Chou, K. C. Analysis of protein pathway networks using hybrid properties. Molecules, 2010, 15(11), 8177-8192.
-
(2010)
Molecules
, vol.15
, Issue.11
, pp. 8177-8192
-
-
Chen, L.1
Huang, T.2
Shi, X.H.3
Cai, Y.D.4
Chou, K.C.5
-
70
-
-
42749090472
-
The modified Mahalanobis Discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition
-
Lin, H. The modified Mahalanobis Discriminant for predicting outer membrane proteins by using Chou's pseudo amino acid composition. J.Theor. Biol., 2008, 252(2), 350-356.
-
(2008)
J.Theor Biol.
, vol.252
, Issue.2
, pp. 350-356
-
-
Lin, H.1
-
71
-
-
67349244013
-
Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach
-
Zeng, Y. H.; Guo, Y. Z.; Xiao, R. Q.; Yang, L.; Yu, L. Z.; Li, M. L. Using the augmented Chou's pseudo amino acid composition for predicting protein submitochondria locations based on auto covariance approach. J.Theor. Biol., 2009, 259(2), 366-372.
-
(2009)
J.Theor Biol.
, vol.259
, Issue.2
, pp. 366-372
-
-
Zeng, Y.H.1
Guo, Y.Z.2
Xiao, R.Q.3
Yang, L.4
Yu, L.Z.5
Li, M.L.6
-
72
-
-
34548439881
-
Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes
-
DOI 10.1016/j.jtbi.2007.06.001, PII S0022519307002809
-
Zhou, X. B.; Chen, C.; Li, Z. C.; Zou, X. Y. Using Chou's amphiphilic pseudo-amino acid composition and support vector machine for prediction of enzyme subfamily classes. J.Theor. Biol., 2007, 248(3), 546-551. (Pubitemid 47368372)
-
(2007)
Journal of Theoretical Biology
, vol.248
, Issue.3
, pp. 546-551
-
-
Zhou, X.-B.1
Chen, C.2
Li, Z.-C.3
Zou, X.-Y.4
-
73
-
-
77958497871
-
Prediction of cyclin proteins using chou's pseudo amino acid composition
-
Mohabatkar, H. Prediction of cyclin proteins using chou's pseudo amino acid composition. Protein Pept. Lett., 2010, 17(10), 1207-1214.
-
(2010)
Protein Pept Lett.
, vol.17
, Issue.10
, pp. 1207-1214
-
-
Mohabatkar, H.1
-
74
-
-
61549096128
-
Prediction of protein secondary structure content by using the concept of chou's pseudo amino acid composition and support vector machine
-
Chen, C.; Chen, L. X.; Zou, X. Y.; Cai, P. X. Prediction of protein secondary structure content by using the concept of chou's pseudo amino acid composition and support vector machine. Protein Pept. Lett., 2009, 16(1), 27-31.
-
(2009)
Protein Pept Lett.
, vol.16
, Issue.1
, pp. 27-31
-
-
Chen, C.1
Chen, L.X.2
Zou, X.Y.3
Cai, P.X.4
-
75
-
-
65349165718
-
Prediction of cell wall lytic enzymes using chou's amphiphilic pseudo amino acid composition
-
Ding, H.; Luo, L. F.; Lin, H. Prediction of cell wall lytic enzymes using chou's amphiphilic pseudo amino acid composition. Protein Pept. Lett., 2009, 16(4), 351-355.
-
(2009)
Protein Pept Lett.
, vol.16
, Issue.4
, pp. 351-355
-
-
Ding, H.1
Luo, L.F.2
Lin, H.3
-
76
-
-
43349094507
-
The igraph software package for complex network research
-
Csárdi, G.; Nepusz, T. The igraph software package for complex network research. Inter Journal Complex Systems, 2006, 1695, 2006.
-
(2006)
Inter Journal Complex Systems
, vol.1695
, pp. 2006
-
-
Csárdi, G.1
Nepusz, T.2
-
77
-
-
70350448693
-
GPCR-GIA: A web-server for identifying G-protein coupled receptors and their families with grey incidence analysis
-
Lin, W. Z.; Xiao, X.; Chou, K. C. GPCR-GIA: a web-server for identifying G-protein coupled receptors and their families with grey incidence analysis. Protein Engineering Design & Selection, 2009, 22(11), 699-705.
-
(2009)
Protein Engineering Design & Selection
, vol.22
, Issue.11
, pp. 699-705
-
-
Lin, W.Z.1
Xiao, X.2
Chou, K.C.3
-
78
-
-
77955673069
-
2D-MH: A web-server for generating graphic representation of protein sequences based on the physicochemical properties of their constituent amino acids
-
Wu, Z. C.; Xiao, X.; Chou, K. C. 2D-MH: A web-server for generating graphic representation of protein sequences based on the physicochemical properties of their constituent amino acids. J. Theor. Biol., 2010, 267, 29-34.
-
(2010)
J. Theor Biol.
, vol.267
, pp. 29-34
-
-
Wu, Z.C.1
Xiao, X.2
Chou, K.C.3
-
79
-
-
77649339280
-
Review: Recent advances in developing web-servers for predicting protein attributes
-
Chou, K. C.; Shen, H. B. Review: recent advances in developing web-servers for predicting protein attributes. Natural Science, 2009, 2, 63-92 (openly accessible at http://www.scirp.org/journal/NS/).
-
(2009)
Natural Science
, vol.2
, pp. 63-92
-
-
Chou, K.C.1
Shen, H.B.2
|