-
1
-
-
58849106769
-
Systems biology: Parameter estimation for biochemical models
-
Ashyraliyev,M. et al. (2009) Systems biology: Parameter estimation for biochemical models. FEBS J., 276, 886-902.
-
(2009)
FEBS J.
, vol.276
, pp. 886-902
-
-
Ashyraliyev, M.1
-
2
-
-
33646352736
-
A quantitative approach to catabolite repression in Escherichia coli
-
Bettenbrock,K. et al. (2005) A quantitative approach to catabolite repression in Escherichia coli. J. Biol. Chem., 281, 2578-2584.
-
(2005)
J. Biol. Chem.
, vol.281
, pp. 2578-2584
-
-
Bettenbrock, K.1
-
3
-
-
84944416149
-
Incremental singular value decomposition of uncertain data with missing values
-
Heyden,A. et al. (eds), of Lecture Notes in Computer Science, Springer, Berlin/Heidelberg
-
Brand,M. (2002) Incremental singular value decomposition of uncertain data with missing values. In Heyden,A. et al. (eds), Proceedings of the 7th European Conference Computer Vision (ECCV 2002),Vol. 2350 of Lecture Notes in Computer Science, Springer, Berlin/Heidelberg, pp. 707-20.
-
(2002)
Proceedings of the 7th European Conference Computer Vision (ECCV 2002)
, vol.2350
, pp. 707-720
-
-
Brand, M.1
-
4
-
-
77952953154
-
Hybrid dynamic modeling of Escherichia coli central metabolic network combining Michaelis-Menten and approximate kinetic equations
-
Costa,R. et al. (2010) Hybrid dynamic modeling of Escherichia coli central metabolic network combining Michaelis-Menten and approximate kinetic equations. iosystems, 100, 150-158.
-
(2010)
Biosystems
, vol.100
, pp. 150-158
-
-
Costa, R.1
-
6
-
-
79959426831
-
System identification challenges from systems biology
-
(SYSID 2006), Newcastle, Australia
-
Crampin,E. (2006) System identification challenges from systems biology. In Proceedings of the 14th IFAC Symposium System Identification (SYSID 2006), ewcastle, Australia, pp. 81-93.
-
(2006)
Proceedings of the 14th IFAC Symposium System Identification
, pp. 81-93
-
-
Crampin, E.1
-
7
-
-
44949171688
-
Challenges in lin-log modelling of glycolysis in Lactococcus lactis
-
del Rosario,R. et al. (2008) Challenges in lin-log modelling of glycolysis in Lactococcus lactis. IET Syst. Biol., 2, 136-149.
-
(2008)
IET Syst. Biol.
, vol.2
, pp. 136-149
-
-
del Rosario, R.1
-
8
-
-
0002629270
-
Maximum likelihood from incomplete data via the EM algorithm
-
Dempster,A. et al. (1977) Maximum likelihood from incomplete data via the EM algorithm. J. Roy. Stat. Soc. Ser. B, 39, 1-38.
-
(1977)
J. Roy. Stat. Soc. Ser. B
, vol.39
, pp. 1-38
-
-
Dempster, A.1
-
9
-
-
60549085055
-
Missing data analysis: Making it work in the real world
-
Graham,J. (2009) Missing data analysis: Making it work in the real world. Annu. Rev. Psychol., 60, 549-576.
-
(2009)
Annu. Rev. Psychol.
, vol.60
, pp. 549-576
-
-
Graham, J.1
-
10
-
-
60849105949
-
Translating biochemical network models between different kinetic formats
-
Hadlich,F. et al. (2009) Translating biochemical network models between different kinetic formats. Metab. Eng., 11, 87-100.
-
(2009)
Metab. Eng.
, vol.11
, pp. 87-100
-
-
Hadlich, F.1
-
11
-
-
35748932045
-
Topology of the global regulatory network of carbon limitation in Escherichia coli
-
Hardiman,T. et al. (2007) Topology of the global regulatory network of carbon limitation in Escherichia coli. J. Biotechnol., 132, 359-374.
-
(2007)
J. Biotechnol.
, vol.132
, pp. 359-374
-
-
Hardiman, T.1
-
12
-
-
1842405351
-
Effects of spatiotemporal variations on metabolic control: Approximate analysis using (log)linear kinetic models
-
Hatzimanikatis,V. and Bailey,J. (1997) Effects of spatiotemporal variations on metabolic control: Approximate analysis using (log)linear kinetic models. iotechnol. Bioeng., 54, 91-104.
-
(1997)
Biotechnol. Bioeng.
, vol.54
, pp. 91-104
-
-
Hatzimanikatis, V.1
Bailey, J.2
-
13
-
-
25144492110
-
Approximative kinetic formats used in metabolic network modeling
-
Heijnen,J. (2005) Approximative kinetic formats used in metabolic network modeling. Biotechnol. Bioeng., 91, 534-545.
-
(2005)
Biotechnol. Bioeng.
, vol.91
, pp. 534-545
-
-
Heijnen, J.1
-
15
-
-
33846873244
-
Much ado about nothing: a comparison of missing data methods and software to fit incomplete data regression models
-
Horton,N. and Kleinman,K. (2007) Much ado about nothing: a comparison of missing data methods and software to fit incomplete data regression models. Am. tat., 61, 79-90.
-
(2007)
Am. Stat.
, vol.61
, pp. 79-90
-
-
Horton, N.1
Kleinman, K.2
-
16
-
-
34247612307
-
Multiple high-throughput analyses monitor the response of E. coli to perturbations
-
Ishii,N. et al. (2007) Multiple high-throughput analyses monitor the response of E. coli to perturbations. Science, 316, 593-597.
-
(2007)
Science
, vol.316
, pp. 593-597
-
-
Ishii, N.1
-
18
-
-
77949385752
-
Bacterial adaptation through distributed sensing of metabolic fluxes
-
Kotte,O. et al (2010) Bacterial adaptation through distributed sensing of metabolic fluxes. Mol. Syst. Biol., 6, 355.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 355
-
-
Kotte, O.1
-
19
-
-
33846617808
-
Bringing metabolic networks to life: Convenience rate law and thermodynamic constraints
-
Liebermeister,W. and Klipp,E. (2006) Bringing metabolic networks to life: Convenience rate law and thermodynamic constraints. Theor. Biol. Med. Model., 3, 1.
-
(2006)
Theor. Biol. Med. Model.
, vol.3
, pp. 41
-
-
Liebermeister, W.1
Klipp, E.2
-
22
-
-
79953794148
-
Derivation, identification and validation of a computational model of a novel synthetic regulatory network in yeast
-
Marucci,L. et al. (2011) Derivation, identification and validation of a computational model of a novel synthetic regulatory network in yeast. J. Math. Biol., 62, 85-706.
-
(2011)
J. Math. Biol.
, vol.62
, pp. 685-706
-
-
Marucci, L.1
-
23
-
-
33846849309
-
A method for estimation of elasticities in metabolic networks using steady state and dynamic metabolomics data and linlog kinetics
-
Nikerel,I. et al. (2006) A method for estimation of elasticities in metabolic networks using steady state and dynamic metabolomics data and linlog kinetics. BMC ioinformatics, 7, 540.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 540
-
-
Nikerel, I.1
-
24
-
-
55549091692
-
Model reduction and a priori kinetic parameter identifiability analysis using metabolome time series for metabolic reaction networks with linlog kinetics
-
Nikerel,I. et al. (2009) Model reduction and a priori kinetic parameter identifiability analysis using metabolome time series for metabolic reaction networks with inlog kinetics. Metab. Eng., 11, 20-30.
-
(2009)
Metab. Eng.
, vol.11
, pp. 20-30
-
-
Nikerel, I.1
-
25
-
-
0242643743
-
A Bayesian missing value estimation method for gene expression profile data
-
Oba,S. et al. (2003) A Bayesian missing value estimation method for gene expression profile data. Bioinformatics, 19, 2088-2096.
-
(2003)
Bioinformatics
, vol.19
, pp. 2088-2096
-
-
Oba, S.1
-
26
-
-
67650760503
-
Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood
-
Raue,A. et al. (2009) Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood. Bioinformatics, 25, 923-1929.
-
(2009)
Bioinformatics
, vol.25
, pp. 1923-1929
-
-
Raue, A.1
-
27
-
-
0017133178
-
Inference and missing data
-
Rubin,D. (1976) Inference and missing data. Biometrika, 63, 581-590.
-
(1976)
Biometrika
, vol.63
, pp. 581-590
-
-
Rubin, D.1
-
28
-
-
0030539070
-
Multiple imputation after 18+ years
-
Rubin,D. (1996) Multiple imputation after 18+ years. J. Am. Stat. A., 81, 473-489.
-
(1996)
J. Am. Stat. A.
, vol.81
, pp. 473-489
-
-
Rubin, D.1
-
30
-
-
27544483496
-
Non-linear PCA: Amissing data approach
-
Scholz,M. et al. (2005) Non-linear PCA: Amissing data approach. Bioinformatics, 21, 3887-3895.
-
(2005)
Bioinformatics
, vol.21
, pp. 3887-3895
-
-
Scholz, M.1
-
31
-
-
77649176477
-
Towards a genome-scale kinetic model of cellular metabolism
-
Smallbone,K. et al. (2010) Towards a genome-scale kinetic model of cellular metabolism. BMC Syst. Biol., 4, 6.
-
(2010)
BMC Syst. Biol.
, vol.4
, pp. 6
-
-
Smallbone, K.1
-
32
-
-
0141642530
-
System identification with information theoretic criteria
-
Bittanti,S. and Picci,G. (eds), Springer
-
Stoorvogel,A. and van Schuppen,J. (1996) System identification with information theoretic criteria. In Bittanti,S. and Picci,G. (eds), Identification, Adaptation, earning, Vol. 153 of NATO ASI, Springer, pp. 289-338.
-
(1996)
Identification, Adaptation, Learning, Vol. 153 of NATO ASI
, pp. 289-338
-
-
Stoorvogel, A.1
van Schuppen, J.2
-
33
-
-
0141684666
-
Dynamic simulation and metabolic re-design of a branched pathway using linlog kinetics
-
Visser,D. and Heijnen,J. (2003) Dynamic simulation and metabolic re-design of a branched pathway using linlog kinetics. Metab. Eng., 5, 164-176.
-
(2003)
Metab. Eng.
, vol.5
, pp. 164-176
-
-
Visser, D.1
Heijnen, J.2
-
34
-
-
6044260198
-
Optimal re-design of primary metabolism in Escherichia coli using linlog kinetics
-
Visser,D. et al. (2004) Optimal re-design of primary metabolism in Escherichia coli using linlog kinetics. Metab. Eng., 6, 378-90.
-
(2004)
Metab. Eng.
, vol.6
, pp. 378-390
-
-
Visser, D.1
|