Morphological differences and molecular phylogeny of freshwater blooming species, Peridiniopsis spp. (Dinophyceae) from China

European Journal of Protistology

Volumn 47, Issue 3, 2011, Pages 149-160

  Zhang, Qi ^a,b   Liu, Guoxiang ^a   Hu, Zhengyu ^a  

^a INSTITUTE OF HYDROBIOLOGY   (China)

^b INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

Author keywords

Diatom endosymbionts; Dinoflagellates; Molecular phylogeny; Morphology; Peridiniopsis penardii var. robusta

Indexed keywords

FRESH WATER;

ANIMAL; ARTICLE; CHINA; CLASSIFICATION; CYTOLOGY; DIATOM; DINOFLAGELLATE; DNA SEQUENCE; GENETICS; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PARASITOLOGY; PHYLOGENY; SCANNING ELECTRON MICROSCOPY; SYMBIOSIS; ULTRASTRUCTURE;

ANIMALS; CHINA; DIATOMS; DINOFLAGELLIDA; EVOLUTION, MOLECULAR; FRESH WATER; MICROSCOPY, ELECTRON, SCANNING; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SYMBIOSIS;

BACILLARIOPHYTA; DINOPHYCEAE; PERIDINIALES; PERIDINIOPSIS; THALASSIOSIRALES;

EID: 79958265016     PISSN: 09324739     EISSN: 16180429     Source Type: Journal    
DOI: 10.1016/j.ejop.2011.03.001     Document Type: Article

References (49)

1. Alverson A.J., Jansen R.K., Theriot E.C. Bridging the Rubicon: phylogenetic analysis reveals repeated colonizations of marine and fresh waters by thalassiosiroid diatoms. Mol. Phylogenet. Evol. 2007, 45:193-210.
2. Bian G., Chen N., Hu Z.Y., Liu G.X. A river in Fujian algal dinoflagellate relationship with the pollution index. J. Lake Sci. 2010, 22:405-410.
3. Bourrelly P. Notes sur les Péridiniens d'eau douce. Protistologica 1968, 4:5-14.
4. Calado A.J., Craveiro S.C., Daugbjerg N., Moestrup Ø. Description of Tyrannodinium gen. nov., a freshwater dinoflagellate closely related to the marine Pfiesteria-like species. J. Phycol. 2009, 45:1195-1205.
5. Cantonati M., Tardio M., Tolotti M., Corradini F. Blooms of the dinoflagellate Glenodinium sanguineum obtained during enclosure experiments in Lake Tovel (N. Italy). J. Limnol. 2003, 62:79-87.
6. Dodge J.D. A re-examination of the relationships between unicellular host and eukaryotic endosymbiont with special reference to Glenodinium foliaceum (Dinophyceae). Endocytobiology II 1983, De Gruyter, Berlin. H.E.A. Schenk, W. Schwemmler (Eds.).
7. Fritz L., Triemer R.E. A rapid simple technique utilizing Calcofluor White M2R for the visualization of dinoflagellate thecal plates. J. Phycol. 1985, 21:662-664.
8. Grigorszky I., Vasas F., Borics G., Klee R., Schmidt A., Borbély G.Y. Peridiniopsis kevei sp. nov., a new freshwater dinoflagellate species (Peridiniaceae, Dinophyta) from Hungary. Acta Bot. Hung. 2001, 43:163-174.
9. Guerrero J., Echenique R. Ceratium hirundinella blooms in Argentine reservoirs. Harmful Algae News 1997, 16:3.
10. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 1999, 41:95-98.
11. Hansen G., Flaim G. Dinoflagellates of the Trentino Province, Italy. J. Limnol. 2007, 66:117-126.
12. Horiguchi T., Chihara M. Life cycle and ultrastructure of Dinothrix paradoxa (Dinophyceae). 15th International Botanical Congress abstract 1993.
13. Horiguchi T., Pienaar R.N. Ultrastructure of a marine dinoflagellate, Peridinium quinquecorne Abé (Peridiniales) from South Africa with particular reference to its chrysophyte endosymbiont. Bot. Mar. 1991, 34:123-131.
14. Horiguchi T., Pienaar R.N. Ultrastructure of a new marine sand-dwelling dinoflagellate Gymnodinium quadrilobatum sp. nov. (Dinophyceae) with special reference to its endosymbiotic algae. Eur. J. Phycol. 1994, 29:237-245.
15. Horiguchi T., Takano Y. Serial replacement of a diatom endosymbiont in the marine dinoflagellate Peridinium quinquecorne (Peridiniales, Dinophyceae). Phycol. Res. 2006, 54:193-200.
16. Houk V., Klee R. The stelligeroid taxa of the genus Cyclotella (Kützing) Brébisson (Bacillariophyceae) and their transfer into the new genus Discostella gen. nov. Diatom Res. 2004, 19:203-228.
17. Huelsenbeck J.P., Crandall K.A. Phylogeny estimation and hypothesis testing using maximum likelihood. Annu. Rev. Ecol. Syst. 1997, 28:437-466.
18. Huelsenbeck J.P., Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 2001, 17:754-755.
19. Imanian B., Keeling P.J. The dinoflagellates Durinskia baltica and Kryptoperidinium foliaceum retain functionally overlapping mitochondria from two evolutionarily distinct lineages. BMC Evol. Biol. 2007, 7:172.
20. Javornický P. Peridinium penardii (Lemm.) Lemm. fo. californicum, forma nova. J. Phycol. 1971, 7:303-306.
21. Jeffrey S.W., Vesk M. Further evidence for a membranebound endosymbiont within the dinoflagellate Peridinium foliaceum. J. Phycol. 1976, 12:450-455.
22. Kempton J.W., Wolny J., Tengs T., Rizzo P., Morris R., Tunnell J., Scott P., Steidinger K., Hymel S.N., Lewitus A.J. Kryptoperidinium foliaceum blooms in South Carolina: a multi-analytical approach to identification. Harmful Algae 2002, 1:383-392.
23. Ki J.-S., Han M.-S. Sequence-based diagnostics and phylogenetic approach of uncultured freshwater dinoflagellate Peridinium (Dinophyceae) species, based on single-cell sequencing of rDNA. J. Appl. Phycol. 2005, 17:147-153.
24. Ki J.-S., Jang G.Y., Han M.-S. Integrated method for single-cell DNA extraction, PCR amplication, and sequencing of ribosomal DNA from harmful dinoflagellates Cochlodinium polykrikoides and Alexandrium catenella. Mar. Biotechnol. 2005, 6:587-593.
25. Leander B.S., Keeling P.J. Early evolutionary history of dinoflagellates and apicomplexans (alveolata) as inferred from HSP90 and actin phylogenies. J. Phycol. 2004, 40:341-350.
26. Litaker R.W., Vandersea M.W., Kibler S.R., Reece K.S., Stokes N.A., Lutzoni F.M., Yonish B.A., West M.A., Black M.N.D., Tester P.A. Recognizing dinoflagellate species using ITS rDNA sequences. J. Phycol. 2007, 43:344-355.
27. Liu G.X., Pei G.F., Hu Z.Y. Peridiniopsis niei sp. nov. (Dinophyceae), a new species of freshwater red tide dinoflagellates from China. Nova Hedwigia 2008, 87:487-499.
28. Lemmermann, E., 1910. Algen I (Schizophyceen, Flagellaten, Peridineen). III. Klasse. Peridiniales. Kryptogamen Flora der Mark Brandenburg.
29. Logares R., Shalchian-Tabrizi K., Boltovskoy A., Rengefors K. Extensive dinoflagellate phylogenies indicate infrequent marine-freshwater transitions. Mol. Phylogenet. Evol. 2007, 45:887-903.
30. Mac Donagh N.E., Casco M.A., Claps M.C. Colonization of a neotropical reservoir (Córdoba, Argentina) by Ceratium hirundinella (O.F. Müller) Bergh. Ann. Limnol. 2005, 41:291-299.
31. Murray S., Jorgensen M.F., Ho S.Y.W., Patterson D.J., Jermiin L.S. Improving the analysis of dinoflagellate phylogeny based on rDNA. Protist 2005, 156:269-286.
32. Penard E. Les Péridiniacées du Léman. Bull. Trav. Soc. Bot. Genève 1891, 6:1-63.
33. Pienaar R.N., Sakai H., Horiguchi T. Description of a new dinoflagellate with a diatom endosymbiont, Durinskia capensis sp. nov. (Peridiniales, Dinophyceae) from South Africa. J. Plant Res. 2007, 120:247-258.
34. Popovský J., Pfiester L.A. Süsswasserflora von Mitteleuropa. Band 6 1990, Dinophceae Gustav Fischer Verlag, Jena, Stuttgart.
35. Posada D., Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 1998, 14:817-818.
36. Regel R.H., Brookes J.D., Ganf G.G. Vertical migration, entrainment and photosynthesis of the freshwater dinoflagellate Peridinium cinctum in a shallow urban lake. J. Plankton Res. 2004, 26:143-157.
37. Rodriguez S., Couté A., Ten-Hage L., Mascarell G. Peridiniopsis durandii sp. nova (Dinophyta), a new freshwater dinoflagellate causing red tides. Arch. Hydrobiol. Suppl. 1999, 130:15-29.
38. Saldarriaga J.F., McEwen M.L., Fast N.M., Taylor F.J.R., Keeling P.J. Multiple protein phylogenies show that Oxyrrhis marina and Perkinsus marinus are early branches of the dinoflagellate lineage. Int. J. Syst. Evol. Micr. 2003, 53:355-365.
39. Schnepf E., Elbrächter M. Dinophyte chloroplasts and phylogeny - a review. Grana 1999, 38:81-97.
40. Swofford D.L. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 2002, Sinauer Associates, Sunderland, MA. 4th ed.
41. Takano Y., Hansen G., Fujita D., Horiguchi T. Serial replacement of diatom endosymbionts in two freshwater dinoflagellates, Peridiniopsis spp. (Peridiniales, Dinophyceae). Phycologia 2008, 47:41-53.
42. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
43. Tamura M., Shimada S., Horiguchi T. Galeidinium rugatum gen. et sp. nov. (Dinophyceae), a new coccoid dinoflagellate with a diatom endosymbiont. J. Phycol. 2005, 41:658-671.
44. Taylor F.J.R., Hoppenrath M., Saldarriaga J.F. Dinoflagellate diversity and distribution. Biodivers. Conserv. 2008, 17:407-418.
45. Ten-Hage L., Da P.K., Mascarell G., Couté A. Peridiniopsis armebeensis sp. nov. (Peridiniales, Dinophyceae), a new species of freshwater dinoflagellates from Ivory Coast, West Africa. Nova Hedwigia 2007, 85:259-272.
46. Thompson J.D., Gibson T.J., Plewniak F. The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997, 25:4876-4882.
47. Tomas R., Cox E.R. Observations on the symbiosis of Peridinium balticum and its intracellular alga I: ultrastructure. J. Phycol. 1973, 9:304-323.
48. White T.J., Bruns T., Lee S., Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protocols: A Guide to Methods and Applications 1990, Academic Press, San Diego. M.A. Innis, D.H. Gelfand, J.J. Sninsky (Eds.).
49. Zhang H., Bhattacharya D., Lin S. A three-gene dinoflagellate phylogeny suggests monophyly of Prorocentrales and a basal position for Amphidinium and Heterocapsa. J. Mol. Evol. 2007, 65:463-474.