메뉴 건너뛰기




Volumn 99, Issue 4, 2011, Pages 837-844

Rapid detection and identification of the free-living nitrogen fixing genus Azospirillum by 16S rRNA-gene-targeted genus-specific primers

Author keywords

16S rRNA gene; Azospirillum; Genus specific primer; Phylogenetic analysis; Plant growth promoting rhizobacteria

Indexed keywords

RNA 16S;

EID: 79958189225     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-011-9558-1     Document Type: Article
Times cited : (21)

References (34)
  • 1
    • 8644281039 scopus 로고    scopus 로고
    • Azospirillum-plant relationships: Physiological, molecular, agricultural, and environmental advances (1997-2003)
    • Bashan Y, Holguin G, de-Bashan L (2004) Azospirillum-plant relationships: physiological, molecular, agricultural, and environmental advances (1997-2003). Can J Microbiol 50:521-577
    • (2004) Can J Microbiol , vol.50 , pp. 521-577
    • Bashan, Y.1    Holguin, G.2    De-Bashan, L.3
  • 2
    • 1842330297 scopus 로고    scopus 로고
    • Transfer of Conglomeromonas largomobilis subsp. largomobilis to the genus Azospirillum as Azospirillum largomobile comb. nov., and elevation of Conglomeromonas largomobilis subsp. parooensis to the new type species of Conglomeromonas, Conglomeromonas parooensis sp. nov.
    • Ben Dekhil S, Cahill M, Stackebrandt E, Sly LI (1997) Transfer of Conglomeromonas largomobilis subsp. largomobilis to the genus Azospirillum as Azospirillum largomobile comb. nov., and elevation of Conglomeromonas largomobilis subsp. parooensis to the new type species of Conglomeromonas, Conglomeromonas parooensis sp. nov. Syst Appl Microbiol 20:72-77 (Pubitemid 27092291)
    • (1997) Systematic and Applied Microbiology , vol.20 , Issue.1 , pp. 72-77
    • Dekhil, S.B.1    Cahill, M.2    Stackebrandt, E.3    Sly, L.I.4
  • 4
    • 0021908518 scopus 로고
    • Deoxyribonucleic acid homology of Azospirillum amazonense Magalhaes et al. 1984 and emendation of the description of the genus Azospirillum
    • Falk EC, Döbereiner J, Johnson JL, Krieg NR (1985) Deoxyribonucleic acid homology of Azospirillum amazonense Magalhães et al. 1984 and emendation of the description of the genus Azospirillum. Int J Syst Bacteriol 35:117-118 (Pubitemid 15127124)
    • (1985) International Journal of Systematic Bacteriology , vol.35 , Issue.1 , pp. 117-118
    • Falk, E.C.1    Dobereiner, J.2    Johnson, J.L.3    Krieg, N.R.4
  • 5
    • 54349112715 scopus 로고    scopus 로고
    • The genus Azospirillum
    • Dworkin M, Falkow S, Rosenberg E, Schleifer K-H, Stackebrandt E (eds) Wiley, New York
    • Hartmann A, Baldani JI (2003) The genus Azospirillum. In: Dworkin M, Falkow S, Rosenberg E, Schleifer K-H, Stackebrandt E (eds) The prokaryotes. Wiley, New York, pp 114-140
    • (2003) The Prokaryotes , pp. 114-140
    • Hartmann, A.1    Baldani, J.I.2
  • 8
    • 0024835895 scopus 로고
    • Azospirillum irakense sp. nov., a nitrogen-fixing bacterium associated with rice roots and rhizosphere soil
    • DOI 10.1016/0923-2508(89)90199-X
    • Khammas KM, Ageron E, Grimont PAD, Kaiser P (1989) Azospirillum irakense sp. nov., a new nitrogen-fixing bacterium associated with rice roots and rhizosphere soil. Res Microbiol 140:679-693 (Pubitemid 20040944)
    • (1989) Research in Microbiology , vol.140 , Issue.9 , pp. 679-693
    • Khammas, K.M.1    Ageron, E.2    Grimont, P.A.D.3    Kaiser, P.4
  • 9
    • 0030694028 scopus 로고    scopus 로고
    • Occurrence, physiological and molecular analysis of endophytic diazotrophic bacteria in gramineous energy plants
    • Kirchhof G, Reis VM, Baldani JI, Eckert B, Doebereiner J, Hartmann A (1997) Occurrence, physiological and molecular analysis of endophytic diazotrophic bacteria in gramineous energy plants. Plant Soil 194:45-55 (Pubitemid 27463643)
    • (1997) Plant and Soil , vol.194 , Issue.1-2 , pp. 45-55
    • Kirchhof, G.1    Reis, V.M.2    Baldani, J.I.3    Eckert, B.4    Dobereiner, J.5    Hartmann, A.6
  • 13
    • 37448999581 scopus 로고    scopus 로고
    • Azospirillum zeae sp. nov., a diazotrophic bacterium isolated from rhizosphere soil of Zea mays
    • Mehnaz S, Weselowski B, Lazarovits G (2007b) Azospirillum zeae sp. nov., a diazotrophic bacterium isolated from rhizosphere soil of Zea mays. Int J Syst Evol Microbiol 57:2805-2809
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 2805-2809
    • Mehnaz, S.1    Weselowski, B.2    Lazarovits, G.3
  • 14
    • 0026619075 scopus 로고
    • Poly-β-hydroxybutyrate metabolism in Azospirillum brasilense and the ecological role of PHB in the rhizosphere
    • Okon Y, Itzigsohn R (1992) Poly-β-hydroxybutyrate metabolism in Azospirillum brasilense and the ecological role of PHB in the rhizosphere. FEMS Microbiol Lett 103: 131-139
    • (1992) FEMS Microbiol Lett , vol.103 , pp. 131-139
    • Okon, Y.1    Itzigsohn, R.2
  • 15
    • 0000078962 scopus 로고    scopus 로고
    • Root-associated Azospirillum species can stimulate plants
    • Okon Y, Vanderleyden J (1997) Root-associated Azospirillum species can stimulate plants. ASM News 63:366-370
    • (1997) ASM News , vol.63 , pp. 366-370
    • Okon, Y.1    Vanderleyden, J.2
  • 17
    • 0002219708 scopus 로고
    • Azospirillum halopraeferens sp. nov., a nitrogen-fixing organism associated with roots of kallar grass (Leptochloa fusca L. Kunth)
    • Reinhold B, Hurek T, Fendrik I, Pot B, Gillis M, Kersters K, Thielemans S, Ley JD (1987) Azospirillum halopraeferens sp. nov., a nitrogen-fixing organism associated with roots of kallar grass (Leptochloa fusca L. Kunth). Int J Syst Bacteriol 37:43-51
    • (1987) Int J Syst Bacteriol , vol.37 , pp. 43-51
    • Reinhold, B.1    Hurek, T.2    Fendrik, I.3    Pot, B.4    Gillis, M.5    Kersters, K.6    Thielemans, S.7    Ley, J.D.8
  • 18
    • 0022552694 scopus 로고
    • Isolation and characterization of siderophores from Azospirillum lipoferum D-2
    • Saxena B, Modi M, Modi V (1986) Isolation and characterization of siderophores from Azospirillum lipoferum D-2. J Gen Microbiol 132:2219-2224 (Pubitemid 16047845)
    • (1986) Journal of General Microbiology , vol.132 , Issue.8 , pp. 2219-2224
    • Saxena, B.1    Modi, M.2    Modi, V.V.3
  • 20
    • 23944505243 scopus 로고    scopus 로고
    • Rapid detection and identification of the metabolically diverse genus Gordonia by 16S rRNA-gene-targeted genus-specific primers
    • DOI 10.1016/j.femsle.2005.07.014, PII S0378109705004751
    • Shen F-T, Young C-C (2005) Rapid detection and identification of the metabolically diverse genus Gordonia by 16S rRNA-gene-targeted genus-specific primers. FEMS Microbiol Lett 250:221-227 (Pubitemid 41188045)
    • (2005) FEMS Microbiology Letters , vol.250 , Issue.2 , pp. 221-227
    • Shen, F.-T.1    Young, C.-C.2
  • 21
    • 0024005650 scopus 로고
    • Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology
    • Stahl DA, Flesher B, Mansfield HR, Montgomery L (1988) Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology. Appl Environ Microbiol 54: 1079-1084
    • (1988) Appl Environ Microbiol , vol.54 , pp. 1079-1084
    • Stahl, D.A.1    Flesher, B.2    Mansfield, H.R.3    Montgomery, L.4
  • 22
    • 0033818519 scopus 로고    scopus 로고
    • Azospirillum, a free-living nitrogen-fixing bacterium closely associated with grasses: Genetic, biochemical and ecological aspects
    • Steenhoudt O, Vanderleyden J (2000) Azospirillum, a free-living nitrogen-fixing bacterium closely associated with grasses: genetic, biochemical and ecological aspects. FEMS Microbiol Rev 24:487-506
    • (2000) FEMS Microbiol Rev , vol.24 , pp. 487-506
    • Steenhoudt, O.1    Vanderleyden, J.2
  • 23
    • 0035031473 scopus 로고    scopus 로고
    • Design and application of new 16S rRNA-targeted oligonucleotide probes for the Azospirillum-Skermanella-Rhodocista-cluster
    • Stoffels M, Castellanos T, Hartmann A (2001) Design and application of new 16S rRNA-targeted oligonucleotide probes for the Azospirillum-Skermanella- Rhodocista-Cluster. Syst Appl Microbiol 24:83-97 (Pubitemid 32433697)
    • (2001) Systematic and Applied Microbiology , vol.24 , Issue.1 , pp. 83-97
    • Stoffels, M.1    Castellanos, T.2    Hartmann, A.3
  • 24
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • DOI 10.1093/molbev/msm092
    • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599 (Pubitemid 47236692)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 25
    • 0018068329 scopus 로고
    • A taxonomic study of the Spirillum lipoferum group, with descriptions of a new genus, Azospirillum gen. nov. and two species, Azospirillum lipoferum (Beijerinck) comb. nov. and Azospirillum brasilense sp. nov.
    • Tarrand JJ, Krieg NR, Döbereiner J (1978) A taxonomic study of the Spirillum lipoferum group, with descriptions of a new genus, Azospirillum gen. nov., and two species, Azospirillum lipoferum (Beijerinck) comb. nov. and Azospirillum brasilense sp. nov. Can J Microbiol 24:967-980 (Pubitemid 9051351)
    • (1978) Canadian Journal of Microbiology , vol.24 , Issue.8 , pp. 967-980
    • Tarrand, J.J.1    Krieg, N.R.2    Dobereiner, J.3
  • 26
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • DOI 10.1093/nar/25.24.4876
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882 (Pubitemid 28022245)
    • (1997) Nucleic Acids Research , vol.25 , Issue.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 27
    • 0041767482 scopus 로고    scopus 로고
    • Plant growth regulators and amino acids released by Azospirillum sp. in chemically defined media
    • DOI 10.1046/j.1472-765X.2003.01373.x
    • Thuler D, Flosh E, Handro W, Barbosa M (2003) Plant growth regulators and amino acids released by Azospirillum sp. in chemically defined medium. Lett Appl Microbiol 37: 174-178 (Pubitemid 36930209)
    • (2003) Letters in Applied Microbiology , vol.37 , Issue.2 , pp. 174-178
    • Thuler, D.S.1    Floh, E.I.S.2    Handro, W.3    Barbosa, H.R.4
  • 28
    • 0001575474 scopus 로고
    • Plant growth substances produced by Azospirillum brasilense and their effect on the growth of pearl millet (Pennisetum americanum L.)
    • Tien TM, Gaskins MH, Hubbell DH (1979) Plant growth substances produced by Azospirillum brasilense and their effect on the growth of pearl millet (Pennisetum americanum L.). Appl Environ Microbiol 37:1016-1024
    • (1979) Appl Environ Microbiol , vol.37 , pp. 1016-1024
    • Tien, T.M.1    Gaskins, M.H.2    Hubbell, D.H.3
  • 29
    • 0035221043 scopus 로고    scopus 로고
    • Automated fluorescent DNA sequencing on the ABI PRISM 310 Genetic Analyzer
    • Watts D, MacBeath JR (2001) Automated fluorescent DNA sequencing on the ABI PRISM 310 Genetic Analyzer. Meth Mol Biol 167:153-170
    • (2001) Meth Mol Biol , vol.167 , pp. 153-170
    • Watts, D.1    MacBeath, J.R.2
  • 30
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
    • Woese CR, Kandler O, Wheelis ML (1990) Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci 87:4576-4579
    • (1990) Proc Natl Acad Sci , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 31
    • 22544458519 scopus 로고    scopus 로고
    • Azospirillum oryzae sp. nov., a nitrogen-fixing bacterium isolated from the roots of the rice plant Oryza sativa
    • Xie CH, Yokota A (2005) Azospirillum oryzae sp. nov., a nitrogen-fixing bacterium isolated from the roots of the rice plant Oryza sativa. Int J Syst Evol Microbiol 55: 1435-1438
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 1435-1438
    • Xie, C.H.1    Yokota, A.2
  • 32
    • 30044444628 scopus 로고    scopus 로고
    • Identification and kinetic characteristics of an indigenous diesel-degrading Gordonia alkanivorans strain
    • DOI 10.1007/s11274-005-5742-7
    • Young C-C, Lin T-C, Yeh M-S, Shen F-T, Chang J-S (2005) Identification and kinetic characteristics of an indigenous diesel-degrading Gordonia alkanivorans strain. World J Microbiol Biotechnol 21:1409-1414 (Pubitemid 43049169)
    • (2005) World Journal of Microbiology and Biotechnology , vol.21 , Issue.8-9 , pp. 1409-1414
    • Young, C.-C.1    Lin, T.-C.2    Yeh, M.-S.3    Shen, F.-T.4    Chang, J.-S.5
  • 34
    • 63249130022 scopus 로고    scopus 로고
    • Azospirillum palatum sp. nov., isolated from forest soil in Zhejiang province, China
    • Zhou Y, Wei W, Wang X, Xu L, Lai R (2009) Azospirillum palatum sp. nov., isolated from forest soil in Zhejiang province, China. J Gen Appl Microbiol 55:1-7
    • (2009) J Gen Appl Microbiol , vol.55 , pp. 1-7
    • Zhou, Y.1    Wei, W.2    Wang, X.3    Xu, L.4    Lai, R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.